Genomic map of Clostridium phage phiCD506 (NC_028838)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028838
Definition
Clostridium phage phiCD506, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
33274
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
29.61
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009202011.1 NC_028838_p24 hypothetical protein phrog_134 unknown function unknown function 1 17798 17935
YP_009202038.1 NC_028838_p51 Site-specific recombinase, phage integrase family phrog_216 integrase integration and excision 1 31987 32547
YP_009202026.1 NC_028838_p39 DNAse/helicase protein phrog_5173 unknown function unknown function 1 25363 27516
YP_009202010.1 NC_028838_p23 hypothetical protein phrog_3834 unknown function unknown function 1 17474 17797
YP_009202012.1 NC_028838_p25 hypothetical protein phrog_1193 hemolysin other 1 17967 18197
YP_009202030.1 NC_028838_p43 hypothetical protein phrog_4206 unknown function unknown function 1 28767 29201
YP_009201999.1 NC_028838_p12 Phage XkdN-like protein phrog_4976 tail assembly chaperone tail 1 8350 8733
YP_009202002.1 NC_028838_p15 LysM domain protein phrog_380 endolysin lysis 1 10671 11309
YP_009202005.1 NC_028838_p18 Phage protein XkdS phrog_120 baseplate wedge subunit tail 1 13411 13839
YP_009201989.1 NC_028838_p2 phage terminase, large subunit phrog_9 terminase large subunit head and packaging 1 461 2110
YP_009201998.1 NC_028838_p11 hypothetical protein phrog_365 tail protein tail 1 7853 8302
YP_009201993.1 NC_028838_p6 Phage DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5294 5581
YP_009202033.1 NC_028838_p46 Single-stranded DNA-binding protein 3 phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 29809 30204
YP_009201988.1 NC_028838_p1 hypothetical protein phrog_1066 unknown function unknown function 1 75 464
YP_009202009.1 NC_028838_p22 hypothetical protein phrog_4184 unknown function unknown function 1 16433 17473
YP_009202001.1 NC_028838_p14 hypothetical protein phrog_991 tail length tape measure protein tail 1 8917 10671
YP_009202018.1 NC_028838_p31 hypothetical protein phrog_4337 unknown function unknown function 1 20737 21207
YP_009202003.1 NC_028838_p16 NlpC/P60 family protein phrog_400 tail protein tail 1 11549 13069
YP_009202034.1 NC_028838_p47 hypothetical protein phrog_3794 unknown function unknown function 1 30262 30408
YP_009202029.1 NC_028838_p42 hypothetical protein phrog_8465 unknown function unknown function 1 28565 28702
YP_009202019.1 NC_028838_p32 hypothetical protein phrog_4021 unknown function unknown function -1 21314 21595
YP_009202020.1 NC_028838_p33 hypothetical protein phrog_4741 unknown function unknown function -1 21738 22070
YP_009202039.1 NC_028838_p52 hypothetical protein phrog_10762 unknown function unknown function 1 32744 32959
YP_009202028.1 NC_028838_p41 Helix-turn-helix domain protein phrog_8 transcriptional regulator transcription regulation -1 28029 28418
YP_009202021.1 NC_028838_p34 para phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 22071 22880
YP_009202024.1 NC_028838_p37 hypothetical protein phrog_5134 unknown function unknown function -1 23587 23715
YP_009202027.1 NC_028838_p40 hypothetical protein phrog_8998 unknown function unknown function 1 27874 28008
YP_009202004.1 NC_028838_p17 hypothetical protein phrog_579 unknown function unknown function 1 13085 13411
YP_009201997.1 NC_028838_p10 hypothetical protein phrog_1480 tail sheath tail 1 6772 7839
YP_009201995.1 NC_028838_p8 Phage protein, HK97family phrog_5 tail completion or Neck1 protein connector 1 5914 6327
YP_009202023.1 NC_028838_p36 hypothetical protein phrog_11497 membrane protein moron, auxiliary metabolic gene and host takeover -1 23352 23513
YP_009202000.1 NC_028838_p13 hypothetical protein phrog_10264 unknown function unknown function 1 8757 8924
YP_009202022.1 NC_028838_p35 hypothetical protein phrog_2329 unknown function unknown function -1 23166 23348
YP_009201996.1 NC_028838_p9 hypothetical protein phrog_525 unknown function unknown function 1 6339 6755
YP_009201994.1 NC_028838_p7 phage head-tail adaptor phrog_25 head closure Hc1 connector 1 5583 5921
YP_009201990.1 NC_028838_p3 Phage portal protein phrog_12 portal protein head and packaging 1 2126 3280
YP_009202040.1 NC_028838_p53 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 32959 33252
YP_009202008.1 NC_028838_p21 phage tail fiber protein phrog_1162 tail fiber protein tail 1 15509 16420
YP_009202006.1 NC_028838_p19 XkdT protein phrog_6 baseplate wedge subunit tail 1 13832 14884
YP_009202036.1 NC_028838_p49 hypothetical protein phrog_5164 unknown function unknown function 1 30806 31066
YP_009202035.1 NC_028838_p48 hypothetical protein phrog_8087 unknown function unknown function 1 30518 30787
YP_009202025.1 NC_028838_p38 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 24196 24918
YP_009201991.1 NC_028838_p4 ATP-dependent Clp protease proteolytic subunit phrog_94 head maturation protease head and packaging 1 3286 4023
YP_009202031.1 NC_028838_p44 hypothetical protein phrog_2065 unknown function unknown function 1 29299 29460
YP_009202017.1 NC_028838_p30 hypothetical protein phrog_15595 unknown function unknown function 1 20400 20696
YP_009202016.1 NC_028838_p29 hypothetical protein phrog_27252 unknown function unknown function -1 19745 20227
YP_009202032.1 NC_028838_p45 hypothetical protein phrog_12681 unknown function unknown function 1 29462 29806
YP_009202015.1 NC_028838_p28 hypothetical protein phrog_33901 unknown function unknown function -1 19471 19728
YP_009201992.1 NC_028838_p5 Phage capsid family protein phrog_10 major head protein head and packaging 1 4016 5284
YP_009202013.1 NC_028838_p26 holin phrog_1129 holin lysis 1 18217 18474
YP_009202014.1 NC_028838_p27 Endolysine phrog_435 endolysin lysis 1 18474 19280
YP_009202037.1 NC_028838_p50 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 31314 31775
YP_009202007.1 NC_028838_p20 hypothetical protein phrog_521 tail protein tail 1 14884 15492