| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028838 |
Definition |
Clostridium phage phiCD506, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
33274 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
29.61 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009202011.1 | NC_028838_p24 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 17798 | 17935 |
| YP_009202038.1 | NC_028838_p51 | Site-specific recombinase, phage integrase family | phrog_216 | integrase | integration and excision | 1 | 31987 | 32547 |
| YP_009202026.1 | NC_028838_p39 | DNAse/helicase protein | phrog_5173 | unknown function | unknown function | 1 | 25363 | 27516 |
| YP_009202010.1 | NC_028838_p23 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 17474 | 17797 |
| YP_009202012.1 | NC_028838_p25 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 17967 | 18197 |
| YP_009202030.1 | NC_028838_p43 | hypothetical protein | phrog_4206 | unknown function | unknown function | 1 | 28767 | 29201 |
| YP_009201999.1 | NC_028838_p12 | Phage XkdN-like protein | phrog_4976 | tail assembly chaperone | tail | 1 | 8350 | 8733 |
| YP_009202002.1 | NC_028838_p15 | LysM domain protein | phrog_380 | endolysin | lysis | 1 | 10671 | 11309 |
| YP_009202005.1 | NC_028838_p18 | Phage protein XkdS | phrog_120 | baseplate wedge subunit | tail | 1 | 13411 | 13839 |
| YP_009201989.1 | NC_028838_p2 | phage terminase, large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 461 | 2110 |
| YP_009201998.1 | NC_028838_p11 | hypothetical protein | phrog_365 | tail protein | tail | 1 | 7853 | 8302 |
| YP_009201993.1 | NC_028838_p6 | Phage DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5294 | 5581 |
| YP_009202033.1 | NC_028838_p46 | Single-stranded DNA-binding protein 3 | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29809 | 30204 |
| YP_009201988.1 | NC_028838_p1 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 75 | 464 |
| YP_009202009.1 | NC_028838_p22 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 16433 | 17473 |
| YP_009202001.1 | NC_028838_p14 | hypothetical protein | phrog_991 | tail length tape measure protein | tail | 1 | 8917 | 10671 |
| YP_009202018.1 | NC_028838_p31 | hypothetical protein | phrog_4337 | unknown function | unknown function | 1 | 20737 | 21207 |
| YP_009202003.1 | NC_028838_p16 | NlpC/P60 family protein | phrog_400 | tail protein | tail | 1 | 11549 | 13069 |
| YP_009202034.1 | NC_028838_p47 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 30262 | 30408 |
| YP_009202029.1 | NC_028838_p42 | hypothetical protein | phrog_8465 | unknown function | unknown function | 1 | 28565 | 28702 |
| YP_009202019.1 | NC_028838_p32 | hypothetical protein | phrog_4021 | unknown function | unknown function | -1 | 21314 | 21595 |
| YP_009202020.1 | NC_028838_p33 | hypothetical protein | phrog_4741 | unknown function | unknown function | -1 | 21738 | 22070 |
| YP_009202039.1 | NC_028838_p52 | hypothetical protein | phrog_10762 | unknown function | unknown function | 1 | 32744 | 32959 |
| YP_009202028.1 | NC_028838_p41 | Helix-turn-helix domain protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 28029 | 28418 |
| YP_009202021.1 | NC_028838_p34 | para | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 22071 | 22880 |
| YP_009202024.1 | NC_028838_p37 | hypothetical protein | phrog_5134 | unknown function | unknown function | -1 | 23587 | 23715 |
| YP_009202027.1 | NC_028838_p40 | hypothetical protein | phrog_8998 | unknown function | unknown function | 1 | 27874 | 28008 |
| YP_009202004.1 | NC_028838_p17 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 13085 | 13411 |
| YP_009201997.1 | NC_028838_p10 | hypothetical protein | phrog_1480 | tail sheath | tail | 1 | 6772 | 7839 |
| YP_009201995.1 | NC_028838_p8 | Phage protein, HK97family | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5914 | 6327 |
| YP_009202023.1 | NC_028838_p36 | hypothetical protein | phrog_11497 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 23352 | 23513 |
| YP_009202000.1 | NC_028838_p13 | hypothetical protein | phrog_10264 | unknown function | unknown function | 1 | 8757 | 8924 |
| YP_009202022.1 | NC_028838_p35 | hypothetical protein | phrog_2329 | unknown function | unknown function | -1 | 23166 | 23348 |
| YP_009201996.1 | NC_028838_p9 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 6339 | 6755 |
| YP_009201994.1 | NC_028838_p7 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 5583 | 5921 |
| YP_009201990.1 | NC_028838_p3 | Phage portal protein | phrog_12 | portal protein | head and packaging | 1 | 2126 | 3280 |
| YP_009202040.1 | NC_028838_p53 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32959 | 33252 |
| YP_009202008.1 | NC_028838_p21 | phage tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 15509 | 16420 |
| YP_009202006.1 | NC_028838_p19 | XkdT protein | phrog_6 | baseplate wedge subunit | tail | 1 | 13832 | 14884 |
| YP_009202036.1 | NC_028838_p49 | hypothetical protein | phrog_5164 | unknown function | unknown function | 1 | 30806 | 31066 |
| YP_009202035.1 | NC_028838_p48 | hypothetical protein | phrog_8087 | unknown function | unknown function | 1 | 30518 | 30787 |
| YP_009202025.1 | NC_028838_p38 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 24196 | 24918 |
| YP_009201991.1 | NC_028838_p4 | ATP-dependent Clp protease proteolytic subunit | phrog_94 | head maturation protease | head and packaging | 1 | 3286 | 4023 |
| YP_009202031.1 | NC_028838_p44 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 29299 | 29460 |
| YP_009202017.1 | NC_028838_p30 | hypothetical protein | phrog_15595 | unknown function | unknown function | 1 | 20400 | 20696 |
| YP_009202016.1 | NC_028838_p29 | hypothetical protein | phrog_27252 | unknown function | unknown function | -1 | 19745 | 20227 |
| YP_009202032.1 | NC_028838_p45 | hypothetical protein | phrog_12681 | unknown function | unknown function | 1 | 29462 | 29806 |
| YP_009202015.1 | NC_028838_p28 | hypothetical protein | phrog_33901 | unknown function | unknown function | -1 | 19471 | 19728 |
| YP_009201992.1 | NC_028838_p5 | Phage capsid family protein | phrog_10 | major head protein | head and packaging | 1 | 4016 | 5284 |
| YP_009202013.1 | NC_028838_p26 | holin | phrog_1129 | holin | lysis | 1 | 18217 | 18474 |
| YP_009202014.1 | NC_028838_p27 | Endolysine | phrog_435 | endolysin | lysis | 1 | 18474 | 19280 |
| YP_009202037.1 | NC_028838_p50 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 31314 | 31775 |
| YP_009202007.1 | NC_028838_p20 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 14884 | 15492 |