| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028841 |
Definition |
Bacteriophage Lily, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Lilyvirus; Paenibacillus virus Lily. |
DB of origin |
REFSEQ |
Length |
44952 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
42.73 |
Number of singletons |
9 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009202263.1 | NC_028841_p57 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 34803 | 36131 |
| YP_009202272.1 | NC_028841_p66 | hypothetical protein | phrog_6998 | unknown function | unknown function | 1 | 39133 | 39348 |
| YP_009202233.1 | NC_028841_p27 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 19122 | 19280 |
| YP_009202256.1 | NC_028841_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30015 | 30209 |
| YP_009202267.1 | NC_028841_p61 | DNA N-6-adenine methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 37368 | 37799 |
| YP_009202264.1 | NC_028841_p58 | hypothetical protein | phrog_6868 | unknown function | unknown function | 1 | 36134 | 36451 |
| YP_009202223.1 | NC_028841_p17 | tail tape measure | phrog_991 | tail length tape measure protein | tail | 1 | 11029 | 13542 |
| YP_009202237.1 | NC_028841_p31 | GTP pyrophosphokinase-like protein | phrog_4012 | unknown function | unknown function | 1 | 20672 | 21346 |
| YP_009202209.1 | NC_028841_p3 | hypothetical protein | phrog_118 | head-tail adaptor | connector | 1 | 2525 | 2746 |
| YP_009202226.1 | NC_028841_p20 | baseplate assembly protein | phrog_11 | baseplate spike | tail | 1 | 14775 | 15152 |
| YP_009202208.1 | NC_028841_p2 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 649 | 2508 |
| YP_009202213.1 | NC_028841_p7 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 5749 | 6777 |
| YP_009202239.1 | NC_028841_p33 | hypothetical protein | phrog_37475 | unknown function | unknown function | 1 | 22350 | 22901 |
| YP_009202278.1 | NC_028841_p72 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 43067 | 43270 |
| YP_009202279.1 | NC_028841_p73 | HicB-like protein | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 43299 | 43709 |
| YP_009202259.1 | NC_028841_p53 | RecT-like protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31909 | 32826 |
| YP_009202266.1 | NC_028841_p60 | hypothetical protein | phrog_24928 | unknown function | unknown function | 1 | 36908 | 37366 |
| YP_009202268.1 | NC_028841_p62 | DNA-cytosine methyltransferase | phrog_363 | DNA methyltransferase | other | 1 | 37796 | 38560 |
| YP_009202234.1 | NC_028841_p28 | bacteriocin-like protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 19316 | 19555 |
| YP_009202221.1 | NC_028841_p15 | hypothetical protein | phrog_3140 | tail assembly chaperone | tail | 1 | 10526 | 10870 |
| YP_009202255.1 | NC_028841_p49 | hypothetical protein | phrog_36416 | unknown function | unknown function | 1 | 29567 | 29998 |
| YP_009202253.1 | NC_028841_p47 | hypothetical protein | phrog_13275 | unknown function | unknown function | 1 | 28637 | 28810 |
| YP_009202252.1 | NC_028841_p46 | hypothetical protein | phrog_10535 | unknown function | unknown function | 1 | 28420 | 28653 |
| YP_009202227.1 | NC_028841_p21 | tail terminator | phrog_76 | tail protein | tail | 1 | 15149 | 15550 |
| YP_009202215.1 | NC_028841_p9 | hypothetical protein | phrog_2551 | minor tail protein | tail | 1 | 6937 | 7248 |
| YP_009202238.1 | NC_028841_p32 | GepA-like protein | phrog_10390 | unknown function | unknown function | 1 | 21361 | 22110 |
| YP_009202207.1 | NC_028841_p1 | terminase small subunit | phrog_57 | terminase small subunit | head and packaging | 1 | 156 | 665 |
| YP_009202251.1 | NC_028841_p45 | hypothetical protein | phrog_22780 | unknown function | unknown function | 1 | 28183 | 28401 |
| YP_009202260.1 | NC_028841_p54 | beta-lactamase-like hydrolase | phrog_392 | metal-dependent hydrolase | other | 1 | 32839 | 33597 |
| YP_009202217.1 | NC_028841_p11 | hypothetical protein | phrog_2581 | virion structural protein | head and packaging | 1 | 7793 | 8260 |
| YP_009202265.1 | NC_028841_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36464 | 36895 |
| YP_009202231.1 | NC_028841_p25 | tail protein | phrog_7037 | tail fiber protein | tail | 1 | 17548 | 18783 |
| YP_009202280.1 | NC_028841_p74 | HicA-like protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 43740 | 43943 |
| YP_009202235.1 | NC_028841_p29 | N-acetylmuramoyl-L-alanine amidase-like protein | phrog_3088 | amidase | lysis | 1 | 19552 | 20226 |
| YP_009202271.1 | NC_028841_p65 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 38757 | 39140 |
| YP_009202247.1 | NC_028841_p41 | DNA binding protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 26448 | 26894 |
| YP_009202211.1 | NC_028841_p5 | Clp protease-like protein | phrog_53 | head maturation protease | head and packaging | 1 | 4262 | 5383 |
| YP_009202218.1 | NC_028841_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8257 | 8529 |
| YP_009202216.1 | NC_028841_p10 | tail protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 7245 | 7796 |
| YP_009202269.1 | NC_028841_p63 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | 1 | 37980 | 38471 |
| YP_009202228.1 | NC_028841_p22 | baseplate wedge protein | phrog_43 | baseplate wedge subunit | tail | 1 | 15540 | 15866 |
| YP_009202246.1 | NC_028841_p40 | hypothetical protein | phrog_9078 | unknown function | unknown function | -1 | 25256 | 25765 |
| YP_009202258.1 | NC_028841_p52 | hypothetical protein | phrog_5189 | unknown function | unknown function | 1 | 31709 | 31906 |
| YP_009202249.1 | NC_028841_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27445 | 27765 |
| YP_009202273.1 | NC_028841_p67 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 39345 | 39932 |
| YP_009202262.1 | NC_028841_p56 | primosome component-like protein | phrog_2514 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 34007 | 34843 |
| YP_009202257.1 | NC_028841_p51 | ATPase | phrog_1499 | unknown function | unknown function | 1 | 30193 | 31722 |
| YP_009202240.1 | NC_028841_p34 | hypothetical protein | phrog_37623 | unknown function | unknown function | 1 | 22913 | 23173 |
| YP_009202236.1 | NC_028841_p30 | holin-like protein | phrog_1299 | holin | lysis | 1 | 20236 | 20478 |
| YP_009202248.1 | NC_028841_p42 | DNA binding protein | phrog_925 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 27113 | 27316 |
| YP_009202229.1 | NC_028841_p23 | baseplate protein | phrog_6 | baseplate wedge subunit | tail | 1 | 15863 | 16987 |
| YP_009202224.1 | NC_028841_p18 | tail protein | phrog_46 | baseplate hub | tail | 1 | 13539 | 13748 |
| YP_009202232.1 | NC_028841_p26 | hypothetical protein | phrog_6220 | unknown function | unknown function | 1 | 18793 | 19125 |
| YP_009202230.1 | NC_028841_p24 | tail protein | phrog_48 | tail protein | tail | 1 | 16984 | 17547 |
| YP_009202270.1 | NC_028841_p64 | hypothetical protein | phrog_7018 | unknown function | unknown function | 1 | 38557 | 38739 |
| YP_009202212.1 | NC_028841_p6 | hypothetical protein | phrog_49 | head decoration | head and packaging | 1 | 5380 | 5733 |
| YP_009202222.1 | NC_028841_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10906 | 11028 |
| YP_009202261.1 | NC_028841_p55 | hypothetical protein | phrog_7503 | unknown function | unknown function | 1 | 33594 | 33992 |
| YP_009202220.1 | NC_028841_p14 | tail tube | phrog_55 | head closure | connector | 1 | 9982 | 10500 |
| YP_009202210.1 | NC_028841_p4 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 2743 | 4302 |
| YP_009202274.1 | NC_028841_p68 | hypothetical protein | phrog_5494 | unknown function | unknown function | 1 | 40091 | 40552 |
| YP_009202243.1 | NC_028841_p37 | Xre-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 24419 | 24649 |
| YP_009202219.1 | NC_028841_p13 | tail sheath | phrog_23 | tail sheath | tail | 1 | 8533 | 9969 |
| YP_009202275.1 | NC_028841_p69 | ArpU-like transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 40603 | 41061 |
| YP_009202277.1 | NC_028841_p71 | serine recombinase | phrog_95 | integrase | integration and excision | 1 | 41293 | 42855 |
| YP_009202244.1 | NC_028841_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24700 | 24828 |
| YP_009202245.1 | NC_028841_p39 | hemolysin BL-like protein | phrog_38199 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | -1 | 25034 | 25237 |
| YP_009202241.1 | NC_028841_p35 | hypothetical protein | phrog_25315 | unknown function | unknown function | -1 | 23485 | 23757 |
| YP_009202214.1 | NC_028841_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6791 | 6940 |
| YP_009202254.1 | NC_028841_p48 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 28815 | 29570 |
| YP_009202250.1 | NC_028841_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27795 | 28148 |
| YP_009202276.1 | NC_028841_p70 | hypothetical protein | phrog_15506 | unknown function | unknown function | 1 | 41073 | 41354 |
| YP_009202242.1 | NC_028841_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24200 | 24322 |
| YP_009202225.1 | NC_028841_p19 | late control protein | phrog_52 | tail protein | tail | 1 | 13745 | 14773 |