| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028842 |
Definition |
Mycobacterium phage CaptainTrips, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
57328 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
107 |
%GC |
61.52 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009202324.1 | NC_028842_p44 | CRO protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34967 | 35200 |
| YP_009202313.1 | NC_028842_p33 | holin | phrog_443 | holin | lysis | 1 | 28930 | 29163 |
| YP_009202342.1 | NC_028842_p62 | RecA | phrog_1366 | unknown function | unknown function | 1 | 41236 | 42213 |
| YP_009202298.1 | NC_028842_p18 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 17247 | 18095 |
| YP_009202378.1 | NC_028842_p98 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 52893 | 53102 |
| YP_009202334.1 | NC_028842_p54 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38535 | 39029 |
| YP_009202381.1 | NC_028842_p101 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53706 | 53948 |
| YP_009202296.1 | NC_028842_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13705 | 15414 |
| YP_009202343.1 | NC_028842_p63 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42210 | 42572 |
| YP_009202369.1 | NC_028842_p89 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 50715 | 50978 |
| YP_009202384.1 | NC_028842_p104 | Ser/Thr kinase | phrog_3297 | kinase | other | 1 | 55558 | 56031 |
| YP_009202354.1 | NC_028842_p74 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 47133 | 47246 |
| YP_009202309.1 | NC_028842_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26266 | 26406 |
| YP_009202304.1 | NC_028842_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 24324 | 24962 |
| YP_009202301.1 | NC_028842_p21 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 22509 | 23675 |
| YP_009202320.1 | NC_028842_p40 | hypothetical protein | phrog_6842 | unknown function | unknown function | -1 | 31616 | 32107 |
| YP_009202376.1 | NC_028842_p96 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52498 | 52722 |
| YP_009202315.1 | NC_028842_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29559 | 29792 |
| YP_009202305.1 | NC_028842_p25 | hypothetical protein | phrog_12500 | minor tail protein | tail | 1 | 24959 | 25477 |
| YP_009202359.1 | NC_028842_p79 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 47890 | 48285 |
| YP_009202349.1 | NC_028842_p69 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 45366 | 45542 |
| YP_009202318.1 | NC_028842_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30895 | 30987 |
| YP_009202360.1 | NC_028842_p80 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 48282 | 48494 |
| YP_009202355.1 | NC_028842_p75 | hypothetical protein | phrog_9299 | unknown function | unknown function | 1 | 47243 | 47329 |
| YP_009202290.1 | NC_028842_p10 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 7429 | 7758 |
| YP_009202379.1 | NC_028842_p99 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 53102 | 53299 |
| YP_009202372.1 | NC_028842_p92 | hypothetical protein | phrog_12331 | unknown function | unknown function | 1 | 51288 | 51470 |
| YP_009202363.1 | NC_028842_p83 | hypothetical protein | phrog_15080 | unknown function | unknown function | 1 | 49097 | 49279 |
| YP_009202346.1 | NC_028842_p66 | hypothetical protein | phrog_7443 | unknown function | unknown function | 1 | 44859 | 45080 |
| YP_009202322.1 | NC_028842_p42 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33513 | 33965 |
| YP_009202281.1 | NC_028842_p1 | hypothetical protein | phrog_8643 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 153 | 698 |
| YP_009202317.1 | NC_028842_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30684 | 30902 |
| YP_009202365.1 | NC_028842_p85 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 49683 | 49898 |
| YP_009202329.1 | NC_028842_p49 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 36066 | 36296 |
| YP_009202293.1 | NC_028842_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 9225 | 10161 |
| YP_009202308.1 | NC_028842_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 26129 | 26269 |
| YP_009202374.1 | NC_028842_p94 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 51586 | 51747 |
| YP_009202370.1 | NC_028842_p90 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50975 | 51154 |
| YP_009202299.1 | NC_028842_p19 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 18092 | 20629 |
| YP_009202382.1 | NC_028842_p102 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 53941 | 54102 |
| YP_009202332.1 | NC_028842_p52 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37910 | 38191 |
| YP_009202287.1 | NC_028842_p7 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5710 | 6531 |
| YP_009202364.1 | NC_028842_p84 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49276 | 49686 |
| YP_009202341.1 | NC_028842_p61 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 40775 | 41239 |
| YP_009202294.1 | NC_028842_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9225 | 9776 |
| YP_009202282.1 | NC_028842_p2 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 754 | 1212 |
| YP_009202347.1 | NC_028842_p67 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 45077 | 45226 |
| YP_009202358.1 | NC_028842_p78 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 47738 | 47893 |
| YP_009202297.1 | NC_028842_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15501 | 17210 |
| YP_009202373.1 | NC_028842_p93 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 51467 | 51589 |
| YP_009202336.1 | NC_028842_p56 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39508 | 39792 |
| YP_009202351.1 | NC_028842_p71 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 45661 | 45879 |
| YP_009202306.1 | NC_028842_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25495 | 25686 |
| YP_009202311.1 | NC_028842_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 26707 | 27915 |
| YP_009202383.1 | NC_028842_p103 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54119 | 55555 |
| YP_009202291.1 | NC_028842_p11 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7778 | 8152 |
| YP_009202283.1 | NC_028842_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1235 | 2872 |
| YP_009202350.1 | NC_028842_p70 | hypothetical protein | phrog_6193 | unknown function | unknown function | 1 | 45542 | 45664 |
| YP_009202286.1 | NC_028842_p6 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 5098 | 5691 |
| YP_009202380.1 | NC_028842_p100 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 53296 | 53709 |
| YP_009202362.1 | NC_028842_p82 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 48768 | 49100 |
| YP_009202285.1 | NC_028842_p5 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 4260 | 5015 |
| YP_009202368.1 | NC_028842_p88 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50521 | 50715 |
| YP_009202327.1 | NC_028842_p47 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35660 | 35923 |
| YP_009202307.1 | NC_028842_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25838 | 26122 |
| YP_009202314.1 | NC_028842_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29160 | 29534 |
| YP_009202377.1 | NC_028842_p97 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52719 | 52886 |
| YP_009202310.1 | NC_028842_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26474 | 26710 |
| YP_009202386.1 | NC_028842_p106 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56237 | 56860 |
| YP_009202367.1 | NC_028842_p87 | hypothetical protein | phrog_6727 | unknown function | unknown function | 1 | 50339 | 50524 |
| YP_009202344.1 | NC_028842_p64 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42569 | 43909 |
| YP_009202289.1 | NC_028842_p9 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 7094 | 7426 |
| YP_009202371.1 | NC_028842_p91 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 51151 | 51291 |
| YP_009202387.1 | NC_028842_p107 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56860 | 57186 |
| YP_009202366.1 | NC_028842_p86 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 49981 | 50352 |
| YP_009202335.1 | NC_028842_p55 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39026 | 39511 |
| YP_009202348.1 | NC_028842_p68 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 45233 | 45385 |
| YP_009202303.1 | NC_028842_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 24057 | 24311 |
| YP_009202361.1 | NC_028842_p81 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48491 | 48775 |
| YP_009202330.1 | NC_028842_p50 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36293 | 37006 |
| YP_009202375.1 | NC_028842_p95 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51744 | 52388 |
| YP_009202319.1 | NC_028842_p39 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 31035 | 31571 |
| YP_009202340.1 | NC_028842_p60 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40536 | 40778 |
| YP_009202345.1 | NC_028842_p65 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 43912 | 44862 |
| YP_009202328.1 | NC_028842_p48 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 35920 | 36069 |
| YP_009202356.1 | NC_028842_p76 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 47326 | 47529 |
| YP_009202352.1 | NC_028842_p72 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45876 | 46781 |
| YP_009202337.1 | NC_028842_p57 | HTH DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39789 | 40154 |
| YP_009202300.1 | NC_028842_p20 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20626 | 22512 |
| YP_009202353.1 | NC_028842_p73 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 46778 | 47140 |
| YP_009202385.1 | NC_028842_p105 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 56004 | 56240 |
| YP_009202312.1 | NC_028842_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27915 | 28916 |
| YP_009202284.1 | NC_028842_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2903 | 4273 |
| YP_009202295.1 | NC_028842_p15 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 10180 | 13704 |
| YP_009202316.1 | NC_028842_p36 | DnaQ-like nuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29779 | 30600 |
| YP_009202325.1 | NC_028842_p45 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35257 | 35544 |
| YP_009202326.1 | NC_028842_p46 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 35541 | 35663 |
| YP_009202339.1 | NC_028842_p59 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40309 | 40539 |
| YP_009202323.1 | NC_028842_p43 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 34231 | 34800 |
| YP_009202321.1 | NC_028842_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 32330 | 33448 |
| YP_009202302.1 | NC_028842_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23693 | 24034 |
| YP_009202338.1 | NC_028842_p58 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40151 | 40309 |
| YP_009202333.1 | NC_028842_p53 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38188 | 38535 |
| YP_009202292.1 | NC_028842_p12 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 8279 | 9088 |
| YP_009202331.1 | NC_028842_p51 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 37041 | 37829 |
| YP_009202357.1 | NC_028842_p77 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47526 | 47720 |
| YP_009202288.1 | NC_028842_p8 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 6531 | 7097 |