Genomic map of Mycobacterium phage CaptainTrips (NC_028842)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028842
Definition
Mycobacterium phage CaptainTrips, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
57328
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
107
%GC
61.52
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009202324.1 NC_028842_p44 CRO protein phrog_3 transcriptional repressor transcription regulation 1 34967 35200
YP_009202313.1 NC_028842_p33 holin phrog_443 holin lysis 1 28930 29163
YP_009202342.1 NC_028842_p62 RecA phrog_1366 unknown function unknown function 1 41236 42213
YP_009202298.1 NC_028842_p18 minor tail protein phrog_732 minor tail protein tail 1 17247 18095
YP_009202378.1 NC_028842_p98 hypothetical protein phrog_6481 unknown function unknown function 1 52893 53102
YP_009202334.1 NC_028842_p54 WhiB phrog_1333 unknown function unknown function 1 38535 39029
YP_009202381.1 NC_028842_p101 hypothetical protein phrog_1385 unknown function unknown function 1 53706 53948
YP_009202296.1 NC_028842_p16 minor tail protein phrog_106 minor tail protein tail 1 13705 15414
YP_009202343.1 NC_028842_p63 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42210 42572
YP_009202369.1 NC_028842_p89 hypothetical protein phrog_6625 unknown function unknown function 1 50715 50978
YP_009202384.1 NC_028842_p104 Ser/Thr kinase phrog_3297 kinase other 1 55558 56031
YP_009202354.1 NC_028842_p74 hypothetical protein phrog_2080 unknown function unknown function 1 47133 47246
YP_009202309.1 NC_028842_p29 hypothetical protein phrog_1172 unknown function unknown function 1 26266 26406
YP_009202304.1 NC_028842_p24 hypothetical protein phrog_2012 minor tail protein tail 1 24324 24962
YP_009202301.1 NC_028842_p21 minor tail protein phrog_2106 minor tail protein tail 1 22509 23675
YP_009202320.1 NC_028842_p40 hypothetical protein phrog_6842 unknown function unknown function -1 31616 32107
YP_009202376.1 NC_028842_p96 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 52498 52722
YP_009202315.1 NC_028842_p35 hypothetical protein phrog_2004 unknown function unknown function 1 29559 29792
YP_009202305.1 NC_028842_p25 hypothetical protein phrog_12500 minor tail protein tail 1 24959 25477
YP_009202359.1 NC_028842_p79 hypothetical protein phrog_1546 unknown function unknown function 1 47890 48285
YP_009202349.1 NC_028842_p69 hypothetical protein phrog_1311 unknown function unknown function 1 45366 45542
YP_009202318.1 NC_028842_p38 hypothetical protein phrog_1839 unknown function unknown function 1 30895 30987
YP_009202360.1 NC_028842_p80 hypothetical protein phrog_3447 unknown function unknown function 1 48282 48494
YP_009202355.1 NC_028842_p75 hypothetical protein phrog_9299 unknown function unknown function 1 47243 47329
YP_009202290.1 NC_028842_p10 head-to-tail connector phrog_1929 head-tail connector protein connector 1 7429 7758
YP_009202379.1 NC_028842_p99 hypothetical protein phrog_1694 unknown function unknown function 1 53102 53299
YP_009202372.1 NC_028842_p92 hypothetical protein phrog_12331 unknown function unknown function 1 51288 51470
YP_009202363.1 NC_028842_p83 hypothetical protein phrog_15080 unknown function unknown function 1 49097 49279
YP_009202346.1 NC_028842_p66 hypothetical protein phrog_7443 unknown function unknown function 1 44859 45080
YP_009202322.1 NC_028842_p42 hypothetical protein phrog_1948 unknown function unknown function -1 33513 33965
YP_009202281.1 NC_028842_p1 hypothetical protein phrog_8643 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 153 698
YP_009202317.1 NC_028842_p37 hypothetical protein phrog_1791 unknown function unknown function 1 30684 30902
YP_009202365.1 NC_028842_p85 hypothetical protein phrog_2939 unknown function unknown function 1 49683 49898
YP_009202329.1 NC_028842_p49 hypothetical protein phrog_780 unknown function unknown function 1 36066 36296
YP_009202293.1 NC_028842_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 9225 10161
YP_009202308.1 NC_028842_p28 hypothetical protein phrog_932 unknown function unknown function 1 26129 26269
YP_009202374.1 NC_028842_p94 hypothetical protein phrog_2278 unknown function unknown function 1 51586 51747
YP_009202370.1 NC_028842_p90 hypothetical protein phrog_1091 unknown function unknown function 1 50975 51154
YP_009202299.1 NC_028842_p19 minor tail protein phrog_346 minor tail protein tail 1 18092 20629
YP_009202382.1 NC_028842_p102 hypothetical protein phrog_2057 unknown function unknown function 1 53941 54102
YP_009202332.1 NC_028842_p52 hypothetical protein phrog_1849 unknown function unknown function 1 37910 38191
YP_009202287.1 NC_028842_p7 major capsid protein phrog_267 major head protein head and packaging 1 5710 6531
YP_009202364.1 NC_028842_p84 hypothetical protein phrog_647 unknown function unknown function 1 49276 49686
YP_009202341.1 NC_028842_p61 hypothetical protein phrog_5168 unknown function unknown function 1 40775 41239
YP_009202294.1 NC_028842_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 9225 9776
YP_009202282.1 NC_028842_p2 terminase small subunit phrog_226 minor tail protein tail 1 754 1212
YP_009202347.1 NC_028842_p67 hypothetical protein phrog_2704 unknown function unknown function 1 45077 45226
YP_009202358.1 NC_028842_p78 hypothetical protein phrog_2060 DNA methyltransferase other 1 47738 47893
YP_009202297.1 NC_028842_p17 minor tail protein phrog_110 minor tail protein tail 1 15501 17210
YP_009202373.1 NC_028842_p93 hypothetical protein phrog_4126 unknown function unknown function 1 51467 51589
YP_009202336.1 NC_028842_p56 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 39508 39792
YP_009202351.1 NC_028842_p71 hypothetical protein phrog_5500 unknown function unknown function 1 45661 45879
YP_009202306.1 NC_028842_p26 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25495 25686
YP_009202311.1 NC_028842_p31 lysin A phrog_700 endolysin lysis 1 26707 27915
YP_009202383.1 NC_028842_p103 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 54119 55555
YP_009202291.1 NC_028842_p11 head-to-tail connector phrog_813 head-tail adaptor connector 1 7778 8152
YP_009202283.1 NC_028842_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1235 2872
YP_009202350.1 NC_028842_p70 hypothetical protein phrog_6193 unknown function unknown function 1 45542 45664
YP_009202286.1 NC_028842_p6 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 5098 5691
YP_009202380.1 NC_028842_p100 hypothetical protein phrog_1186 unknown function unknown function 1 53296 53709
YP_009202362.1 NC_028842_p82 hypothetical protein phrog_722 unknown function unknown function 1 48768 49100
YP_009202285.1 NC_028842_p5 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 4260 5015
YP_009202368.1 NC_028842_p88 hypothetical protein phrog_1901 unknown function unknown function 1 50521 50715
YP_009202327.1 NC_028842_p47 hypothetical protein phrog_1840 excisionase integration and excision 1 35660 35923
YP_009202307.1 NC_028842_p27 hypothetical protein phrog_411 unknown function unknown function 1 25838 26122
YP_009202314.1 NC_028842_p34 hypothetical protein phrog_404 minor tail protein tail 1 29160 29534
YP_009202377.1 NC_028842_p97 hypothetical protein phrog_1869 unknown function unknown function 1 52719 52886
YP_009202310.1 NC_028842_p30 hypothetical protein phrog_747 unknown function unknown function 1 26474 26710
YP_009202386.1 NC_028842_p106 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 56237 56860
YP_009202367.1 NC_028842_p87 hypothetical protein phrog_6727 unknown function unknown function 1 50339 50524
YP_009202344.1 NC_028842_p64 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 42569 43909
YP_009202289.1 NC_028842_p9 head-to-tail connector phrog_763 head-tail adaptor connector 1 7094 7426
YP_009202371.1 NC_028842_p91 hypothetical protein phrog_1545 unknown function unknown function 1 51151 51291
YP_009202387.1 NC_028842_p107 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 56860 57186
YP_009202366.1 NC_028842_p86 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 49981 50352
YP_009202335.1 NC_028842_p55 hypothetical protein phrog_2096 unknown function unknown function 1 39026 39511
YP_009202348.1 NC_028842_p68 hypothetical protein phrog_2070 unknown function unknown function 1 45233 45385
YP_009202303.1 NC_028842_p23 hypothetical protein phrog_2005 minor tail protein tail 1 24057 24311
YP_009202361.1 NC_028842_p81 hypothetical protein phrog_647 unknown function unknown function 1 48491 48775
YP_009202330.1 NC_028842_p50 hypothetical protein phrog_1797 unknown function unknown function 1 36293 37006
YP_009202375.1 NC_028842_p95 hypothetical protein phrog_1467 unknown function unknown function 1 51744 52388
YP_009202319.1 NC_028842_p39 hypothetical protein phrog_357 transcriptional repressor transcription regulation -1 31035 31571
YP_009202340.1 NC_028842_p60 hypothetical protein phrog_2632 unknown function unknown function 1 40536 40778
YP_009202345.1 NC_028842_p65 DNA methylase phrog_67 DNA methyltransferase other 1 43912 44862
YP_009202328.1 NC_028842_p48 hypothetical protein phrog_1816 unknown function unknown function 1 35920 36069
YP_009202356.1 NC_028842_p76 hypothetical protein phrog_2730 unknown function unknown function 1 47326 47529
YP_009202352.1 NC_028842_p72 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 45876 46781
YP_009202337.1 NC_028842_p57 HTH DNA binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39789 40154
YP_009202300.1 NC_028842_p20 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 20626 22512
YP_009202353.1 NC_028842_p73 hypothetical protein phrog_4296 unknown function unknown function 1 46778 47140
YP_009202385.1 NC_028842_p105 hypothetical protein phrog_1693 unknown function unknown function 1 56004 56240
YP_009202312.1 NC_028842_p32 lysin B phrog_102 endolysin lysis 1 27915 28916
YP_009202284.1 NC_028842_p4 portal protein phrog_104 portal protein head and packaging 1 2903 4273
YP_009202295.1 NC_028842_p15 tapemeasure phrog_1942 tail length tape measure protein tail 1 10180 13704
YP_009202316.1 NC_028842_p36 DnaQ-like nuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29779 30600
YP_009202325.1 NC_028842_p45 hypothetical protein phrog_2025 unknown function unknown function 1 35257 35544
YP_009202326.1 NC_028842_p46 hypothetical protein phrog_5563 unknown function unknown function 1 35541 35663
YP_009202339.1 NC_028842_p59 hypothetical protein phrog_1834 unknown function unknown function 1 40309 40539
YP_009202323.1 NC_028842_p43 immunity repressor phrog_2838 transcriptional repressor transcription regulation -1 34231 34800
YP_009202321.1 NC_028842_p41 integrase phrog_1 integrase integration and excision 1 32330 33448
YP_009202302.1 NC_028842_p22 hypothetical protein phrog_240 head protein head and packaging 1 23693 24034
YP_009202338.1 NC_028842_p58 hypothetical protein phrog_2078 unknown function unknown function 1 40151 40309
YP_009202333.1 NC_028842_p53 hypothetical protein phrog_658 unknown function unknown function 1 38188 38535
YP_009202292.1 NC_028842_p12 major tail subunit phrog_476 major tail protein tail 1 8279 9088
YP_009202331.1 NC_028842_p51 hypothetical protein phrog_3416 unknown function unknown function 1 37041 37829
YP_009202357.1 NC_028842_p77 hypothetical protein phrog_1943 unknown function unknown function 1 47526 47720
YP_009202288.1 NC_028842_p8 head-to-tail connector phrog_2377 head-tail adaptor Ad1 connector 1 6531 7097