| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028843 |
Definition |
Mycobacterium phage Lolly9, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus. |
DB of origin |
REFSEQ |
Length |
75816 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
130 |
%GC |
59.31 |
Number of singletons |
12 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009202463.1 | NC_028843_p76 | HJ Resolvase RusA-like protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53537 | 53929 |
| YP_009202430.1 | NC_028843_p43 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 36288 | 36650 |
| YP_009202434.1 | NC_028843_p47 | hypothetical protein | phrog_17191 | unknown function | unknown function | 1 | 38143 | 38316 |
| YP_009202497.1 | NC_028843_p110 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67142 | 67402 |
| YP_009202408.1 | NC_028843_p21 | Minor tail protein | phrog_746 | minor tail protein | tail | 1 | 19528 | 22035 |
| YP_009202406.1 | NC_028843_p19 | Minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17191 | 18954 |
| YP_009202415.1 | NC_028843_p28 | Lysin B | phrog_102 | endolysin | lysis | 1 | 26618 | 27661 |
| YP_009202389.1 | NC_028843_p2 | hypothetical protein | phrog_1496 | terminase small subunit | head and packaging | 1 | 481 | 852 |
| YP_009202403.1 | NC_028843_p16 | Tail assembly chaperone | phrog_18272 | tail assembly chaperone | tail | 1 | 10438 | 10947 |
| YP_009202448.1 | NC_028843_p61 | ssDNA bindiing protein ERF family | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45358 | 45630 |
| YP_009202507.1 | NC_028843_p120 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70939 | 71193 |
| YP_009202493.1 | NC_028843_p106 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 65540 | 65926 |
| YP_009202405.1 | NC_028843_p18 | Minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16308 | 17198 |
| YP_009202517.1 | NC_028843_p130 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75251 | 75412 |
| YP_009202480.1 | NC_028843_p93 | DNA-Q exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60499 | 61281 |
| YP_009202503.1 | NC_028843_p116 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 69501 | 69785 |
| YP_009202509.1 | NC_028843_p122 | hypothetical protein | singleton | unknown function | unknown function | -1 | 72298 | 72462 |
| YP_009202496.1 | NC_028843_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 67032 | 67160 |
| YP_009202412.1 | NC_028843_p25 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 24634 | 24741 |
| YP_009202501.1 | NC_028843_p114 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 69015 | 69251 |
| YP_009202494.1 | NC_028843_p107 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66139 | 66315 |
| YP_009202453.1 | NC_028843_p66 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 47057 | 47737 |
| YP_009202436.1 | NC_028843_p49 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 39499 | 39897 |
| YP_009202422.1 | NC_028843_p35 | hypothetical protein | phrog_17141 | unknown function | unknown function | -1 | 30781 | 31164 |
| YP_009202419.1 | NC_028843_p32 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 29132 | 29407 |
| YP_009202429.1 | NC_028843_p42 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35541 | 35864 |
| YP_009202410.1 | NC_028843_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23272 | 23655 |
| YP_009202487.1 | NC_028843_p100 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62754 | 62867 |
| YP_009202444.1 | NC_028843_p57 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 43242 | 43418 |
| YP_009202504.1 | NC_028843_p117 | hypothetical protein | phrog_8547 | unknown function | unknown function | -1 | 69788 | 69937 |
| YP_009202439.1 | NC_028843_p52 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 40395 | 40631 |
| YP_009202388.1 | NC_028843_p1 | hypothetical protein | phrog_23622 | unknown function | unknown function | 1 | 84 | 473 |
| YP_009202495.1 | NC_028843_p108 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 66387 | 67013 |
| YP_009202468.1 | NC_028843_p81 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 55259 | 55642 |
| YP_009202418.1 | NC_028843_p31 | NrdH glutaredoxin protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 28548 | 28814 |
| YP_009202474.1 | NC_028843_p87 | hypothetical protein | phrog_20980 | unknown function | unknown function | 1 | 58708 | 58812 |
| YP_009202466.1 | NC_028843_p79 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 54471 | 54710 |
| YP_009202481.1 | NC_028843_p94 | hypothetical protein | phrog_6821 | unknown function | unknown function | 1 | 61278 | 61478 |
| YP_009202428.1 | NC_028843_p41 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 34974 | 35369 |
| YP_009202427.1 | NC_028843_p40 | DNA binding protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34759 | 34977 |
| YP_009202457.1 | NC_028843_p70 | hypothetical protein | phrog_18534 | unknown function | unknown function | 1 | 49728 | 49886 |
| YP_009202393.1 | NC_028843_p6 | Portal | phrog_104 | portal protein | head and packaging | 1 | 2762 | 4405 |
| YP_009202472.1 | NC_028843_p85 | CliP protease | phrog_94 | head maturation protease | head and packaging | 1 | 57509 | 58162 |
| YP_009202441.1 | NC_028843_p54 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42464 | 42805 |
| YP_009202423.1 | NC_028843_p36 | Integrase (Y-int) | phrog_1 | integrase | integration and excision | 1 | 31683 | 32990 |
| YP_009202505.1 | NC_028843_p118 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69939 | 70076 |
| YP_009202417.1 | NC_028843_p30 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 28138 | 28557 |
| YP_009202459.1 | NC_028843_p72 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 50013 | 50861 |
| YP_009202447.1 | NC_028843_p60 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44570 | 45358 |
| YP_009202450.1 | NC_028843_p63 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 45932 | 46303 |
| YP_009202464.1 | NC_028843_p77 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 53913 | 54164 |
| YP_009202392.1 | NC_028843_p5 | Terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1196 | 2761 |
| YP_009202397.1 | NC_028843_p10 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7378 | 7854 |
| YP_009202512.1 | NC_028843_p125 | hypothetical protein | phrog_28370 | unknown function | unknown function | -1 | 74033 | 74185 |
| YP_009202390.1 | NC_028843_p3 | hypothetical protein | phrog_18572 | unknown function | unknown function | 1 | 857 | 1045 |
| YP_009202510.1 | NC_028843_p123 | AAA ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 72573 | 73781 |
| YP_009202471.1 | NC_028843_p84 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 56211 | 57509 |
| YP_009202467.1 | NC_028843_p80 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54769 | 55266 |
| YP_009202420.1 | NC_028843_p33 | Nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 29417 | 30157 |
| YP_009202486.1 | NC_028843_p99 | hypothetical protein | phrog_14116 | unknown function | unknown function | 1 | 62459 | 62716 |
| YP_009202437.1 | NC_028843_p50 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 39894 | 40139 |
| YP_009202456.1 | NC_028843_p69 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 49299 | 49580 |
| YP_009202443.1 | NC_028843_p56 | hypothetical protein | phrog_17581 | unknown function | unknown function | 1 | 43112 | 43264 |
| YP_009202413.1 | NC_028843_p26 | Lysin A | phrog_317 | endolysin | lysis | 1 | 24741 | 26216 |
| YP_009202484.1 | NC_028843_p97 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 62136 | 62363 |
| YP_009202424.1 | NC_028843_p37 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32987 | 33775 |
| YP_009202489.1 | NC_028843_p102 | hypothetical protein | phrog_19018 | unknown function | unknown function | 1 | 63345 | 63518 |
| YP_009202477.1 | NC_028843_p90 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59420 | 59827 |
| YP_009202470.1 | NC_028843_p83 | hypothetical protein | phrog_15155 | unknown function | unknown function | 1 | 55882 | 56214 |
| YP_009202411.1 | NC_028843_p24 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 23667 | 24608 |
| YP_009202488.1 | NC_028843_p101 | hypothetical protein | phrog_10290 | unknown function | unknown function | 1 | 62957 | 63145 |
| YP_009202391.1 | NC_028843_p4 | hypothetical protein | phrog_17068 | unknown function | unknown function | 1 | 1038 | 1196 |
| YP_009202394.1 | NC_028843_p7 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 4422 | 5492 |
| YP_009202490.1 | NC_028843_p103 | hypothetical protein | phrog_26254 | unknown function | unknown function | 1 | 64003 | 64269 |
| YP_009202426.1 | NC_028843_p39 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34550 | 34762 |
| YP_009202435.1 | NC_028843_p48 | hypothetical protein | phrog_200 | lipoprotein | other | 1 | 38388 | 39320 |
| YP_009202398.1 | NC_028843_p11 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 7851 | 8189 |
| YP_009202446.1 | NC_028843_p59 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43839 | 44576 |
| YP_009202414.1 | NC_028843_p27 | hypothetical protein | phrog_526 | holin | lysis | 1 | 26216 | 26617 |
| YP_009202416.1 | NC_028843_p29 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 27674 | 28135 |
| YP_009202421.1 | NC_028843_p34 | Lsr2 DNA binding protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 30253 | 30693 |
| YP_009202513.1 | NC_028843_p126 | hypothetical protein | phrog_16092 | unknown function | unknown function | -1 | 74237 | 74440 |
| YP_009202498.1 | NC_028843_p111 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 67395 | 67634 |
| YP_009202452.1 | NC_028843_p65 | hypothetical protein | phrog_2693 | unknown function | unknown function | 1 | 46603 | 47064 |
| YP_009202479.1 | NC_028843_p92 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 60161 | 60502 |
| YP_009202515.1 | NC_028843_p128 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74823 | 75149 |
| YP_009202485.1 | NC_028843_p98 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 62356 | 62475 |
| YP_009202425.1 | NC_028843_p38 | Immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33941 | 34324 |
| YP_009202399.1 | NC_028843_p12 | hypothetical protein | phrog_5775 | head-tail connector protein | connector | 1 | 8189 | 8605 |
| YP_009202454.1 | NC_028843_p67 | hypothetical protein | phrog_12888 | unknown function | unknown function | 1 | 47737 | 48036 |
| YP_009202516.1 | NC_028843_p129 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75133 | 75279 |
| YP_009202440.1 | NC_028843_p53 | RNA binding protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 40643 | 42082 |
| YP_009202461.1 | NC_028843_p74 | hypothetical protein | phrog_505 | polynucleotide kinase | other | 1 | 52419 | 53354 |
| YP_009202483.1 | NC_028843_p96 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61717 | 62136 |
| YP_009202449.1 | NC_028843_p62 | hypothetical protein | phrog_7527 | unknown function | unknown function | 1 | 45642 | 45935 |
| YP_009202473.1 | NC_028843_p86 | hypothetical protein | phrog_7495 | unknown function | unknown function | 1 | 58162 | 58707 |
| YP_009202475.1 | NC_028843_p88 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 58809 | 59039 |
| YP_009202407.1 | NC_028843_p20 | Minor tail protein | phrog_4413 | minor tail protein | tail | 1 | 19079 | 19528 |
| YP_009202396.1 | NC_028843_p9 | Major Capsid | phrog_283 | major head protein | head and packaging | 1 | 6207 | 7367 |
| YP_009202478.1 | NC_028843_p91 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 59914 | 60183 |
| YP_009202455.1 | NC_028843_p68 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 48037 | 49302 |
| YP_009202395.1 | NC_028843_p8 | Scaffolding protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5548 | 6147 |
| YP_009202442.1 | NC_028843_p55 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 42798 | 43115 |
| YP_009202491.1 | NC_028843_p104 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64419 | 64766 |
| YP_009202404.1 | NC_028843_p17 | Tape measure | phrog_3547 | tail length tape measure protein | tail | 1 | 10976 | 16219 |
| YP_009202514.1 | NC_028843_p127 | hypothetical protein | phrog_26014 | unknown function | unknown function | -1 | 74467 | 74694 |
| YP_009202401.1 | NC_028843_p14 | Major Tail | phrog_476 | major tail protein | tail | 1 | 9130 | 10029 |
| YP_009202400.1 | NC_028843_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8615 | 9100 |
| YP_009202462.1 | NC_028843_p75 | Polynucleotide kinase | phrog_6064 | unknown function | unknown function | 1 | 53354 | 53536 |
| YP_009202511.1 | NC_028843_p124 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73908 | 74030 |
| YP_009202500.1 | NC_028843_p113 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 68594 | 68974 |
| YP_009202432.1 | NC_028843_p45 | hypothetical protein | phrog_17914 | unknown function | unknown function | 1 | 37643 | 37861 |
| YP_009202476.1 | NC_028843_p89 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 59032 | 59370 |
| YP_009202433.1 | NC_028843_p46 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 37851 | 38165 |
| YP_009202438.1 | NC_028843_p51 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 40240 | 40398 |
| YP_009202402.1 | NC_028843_p15 | Tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 10131 | 10406 |
| YP_009202431.1 | NC_028843_p44 | hypothetical protein | phrog_1649 | metallo-phosphoesterase | other | 1 | 36834 | 37643 |
| YP_009202445.1 | NC_028843_p58 | hypothetical protein | phrog_7425 | unknown function | unknown function | 1 | 43408 | 43599 |
| YP_009202451.1 | NC_028843_p64 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46290 | 46622 |
| YP_009202409.1 | NC_028843_p22 | Minor tail protein | phrog_416 | minor tail protein | tail | 1 | 22045 | 23244 |
| YP_009202469.1 | NC_028843_p82 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 55730 | 55885 |
| YP_009202492.1 | NC_028843_p105 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 64846 | 65553 |
| YP_009202508.1 | NC_028843_p121 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 71386 | 72213 |
| YP_009202506.1 | NC_028843_p119 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 70414 | 70872 |
| YP_009202482.1 | NC_028843_p95 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 61453 | 61587 |
| YP_009202460.1 | NC_028843_p73 | Nicotinamide ribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 50858 | 52333 |
| YP_009202465.1 | NC_028843_p78 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 54161 | 54481 |
| YP_009202499.1 | NC_028843_p112 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 67663 | 68523 |
| YP_009202502.1 | NC_028843_p115 | hypothetical protein | phrog_7390 | unknown function | unknown function | -1 | 69220 | 69414 |
| YP_009202458.1 | NC_028843_p71 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 49879 | 50028 |