| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028844 |
Definition |
Mycobacterium phage Phatniss, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
57293 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
101 |
%GC |
61.33 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009202521.1 | NC_028844_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3597 | 4352 |
| YP_009202580.1 | NC_028844_p63 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41806 | 42168 |
| YP_009202544.1 | NC_028844_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25945 | 26229 |
| YP_009202536.1 | NC_028844_p19 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 17901 | 20438 |
| YP_009202538.1 | NC_028844_p21 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 22324 | 23484 |
| YP_009202605.1 | NC_028844_p88 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 50691 | 50810 |
| YP_009202548.1 | NC_028844_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 26823 | 28016 |
| YP_009202540.1 | NC_028844_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23862 | 24119 |
| YP_009202606.1 | NC_028844_p89 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 50807 | 51136 |
| YP_009202615.1 | NC_028844_p98 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53597 | 55207 |
| YP_009202588.1 | NC_028844_p71 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 45919 | 46179 |
| YP_009202607.1 | NC_028844_p90 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 51133 | 51402 |
| YP_009202578.1 | NC_028844_p61 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40953 | 41234 |
| YP_009202549.1 | NC_028844_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 28016 | 29017 |
| YP_009202541.1 | NC_028844_p24 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 24132 | 24770 |
| YP_009202570.1 | NC_028844_p53 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 38333 | 38611 |
| YP_009202527.1 | NC_028844_p10 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7095 | 7499 |
| YP_009202518.1 | NC_028844_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009202576.1 | NC_028844_p59 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40574 | 40729 |
| YP_009202531.1 | NC_028844_p14 | HNH homing endonuclease | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9487 | 10026 |
| YP_009202529.1 | NC_028844_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8532 | 9468 |
| YP_009202563.1 | NC_028844_p46 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 36491 | 36790 |
| YP_009202585.1 | NC_028844_p68 | tRNA methyl transferase | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 43397 | 44245 |
| YP_009202562.1 | NC_028844_p45 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35050 | 35916 |
| YP_009202555.1 | NC_028844_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 31002 | 31094 |
| YP_009202602.1 | NC_028844_p85 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50038 | 50217 |
| YP_009202601.1 | NC_028844_p84 | hypothetical protein | phrog_3472 | unknown function | unknown function | 1 | 49778 | 50041 |
| YP_009202532.1 | NC_028844_p15 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 10026 | 13517 |
| YP_009202552.1 | NC_028844_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29660 | 29893 |
| YP_009202610.1 | NC_028844_p93 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52371 | 52538 |
| YP_009202586.1 | NC_028844_p69 | GIY-YIG homing endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44388 | 44948 |
| YP_009202617.1 | NC_028844_p100 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55413 | 56036 |
| YP_009202547.1 | NC_028844_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26593 | 26826 |
| YP_009202520.1 | NC_028844_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2240 | 3610 |
| YP_009202558.1 | NC_028844_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 31939 | 33228 |
| YP_009202590.1 | NC_028844_p73 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 46379 | 46573 |
| YP_009202608.1 | NC_028844_p91 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51399 | 52040 |
| YP_009202519.1 | NC_028844_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 572 | 2209 |
| YP_009202561.1 | NC_028844_p44 | CRO protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34757 | 34990 |
| YP_009202603.1 | NC_028844_p86 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 50222 | 50359 |
| YP_009202530.1 | NC_028844_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8532 | 9083 |
| YP_009202579.1 | NC_028844_p62 | HTH DNA-binding protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41231 | 41809 |
| YP_009202572.1 | NC_028844_p55 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38955 | 39449 |
| YP_009202596.1 | NC_028844_p79 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 47817 | 48005 |
| YP_009202574.1 | NC_028844_p57 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39928 | 40212 |
| YP_009202533.1 | NC_028844_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13518 | 15227 |
| YP_009202571.1 | NC_028844_p54 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38608 | 38955 |
| YP_009202598.1 | NC_028844_p81 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 48507 | 49100 |
| YP_009202568.1 | NC_028844_p51 | hypothetical protein | phrog_3381 | unknown function | unknown function | 1 | 37470 | 37643 |
| YP_009202591.1 | NC_028844_p74 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 46570 | 46998 |
| YP_009202583.1 | NC_028844_p66 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 43108 | 43251 |
| YP_009202587.1 | NC_028844_p70 | DNA binding protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 44948 | 45922 |
| YP_009202573.1 | NC_028844_p56 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39446 | 39931 |
| YP_009202546.1 | NC_028844_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26379 | 26519 |
| YP_009202600.1 | NC_028844_p83 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 49365 | 49781 |
| YP_009202575.1 | NC_028844_p58 | HTH DNA-binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40209 | 40574 |
| YP_009202611.1 | NC_028844_p94 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 52545 | 52754 |
| YP_009202523.1 | NC_028844_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5047 | 5868 |
| YP_009202582.1 | NC_028844_p65 | hypothetical protein | phrog_6938 | unknown function | unknown function | 1 | 42839 | 43108 |
| YP_009202567.1 | NC_028844_p50 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37282 | 37473 |
| YP_009202526.1 | NC_028844_p9 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6779 | 7105 |
| YP_009202604.1 | NC_028844_p87 | hypothetical protein | phrog_7643 | unknown function | unknown function | 1 | 50356 | 50694 |
| YP_009202556.1 | NC_028844_p39 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31197 | 31343 |
| YP_009202589.1 | NC_028844_p72 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 46179 | 46382 |
| YP_009202554.1 | NC_028844_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30758 | 31009 |
| YP_009202565.1 | NC_028844_p48 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 36999 | 37091 |
| YP_009202534.1 | NC_028844_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15310 | 17019 |
| YP_009202535.1 | NC_028844_p18 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 17074 | 17904 |
| YP_009202577.1 | NC_028844_p60 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40726 | 40956 |
| YP_009202542.1 | NC_028844_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24767 | 25591 |
| YP_009202593.1 | NC_028844_p76 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 47173 | 47334 |
| YP_009202553.1 | NC_028844_p36 | Dna-Q like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29880 | 30701 |
| YP_009202537.1 | NC_028844_p20 | D-ala D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20435 | 22321 |
| YP_009202543.1 | NC_028844_p26 | HTH DNA-binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25597 | 25794 |
| YP_009202524.1 | NC_028844_p7 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5877 | 6446 |
| YP_009202584.1 | NC_028844_p67 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 43248 | 43400 |
| YP_009202612.1 | NC_028844_p95 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52754 | 52951 |
| YP_009202597.1 | NC_028844_p80 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48075 | 48446 |
| YP_009202564.1 | NC_028844_p47 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36787 | 37002 |
| YP_009202616.1 | NC_028844_p99 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 55210 | 55416 |
| YP_009202595.1 | NC_028844_p78 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 47540 | 47824 |
| YP_009202560.1 | NC_028844_p43 | repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 34018 | 34638 |
| YP_009202559.1 | NC_028844_p42 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33309 | 33755 |
| YP_009202545.1 | NC_028844_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 26236 | 26382 |
| YP_009202551.1 | NC_028844_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29261 | 29635 |
| YP_009202581.1 | NC_028844_p64 | hypothetical protein | phrog_2233 | unknown function | unknown function | 1 | 42165 | 42842 |
| YP_009202528.1 | NC_028844_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7609 | 8418 |
| YP_009202594.1 | NC_028844_p77 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 47331 | 47543 |
| YP_009202613.1 | NC_028844_p96 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 52948 | 53361 |
| YP_009202614.1 | NC_028844_p97 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53358 | 53600 |
| YP_009202550.1 | NC_028844_p33 | holin | phrog_443 | holin | lysis | 1 | 29031 | 29264 |
| YP_009202618.1 | NC_028844_p101 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56036 | 56380 |
| YP_009202599.1 | NC_028844_p82 | hypothetical protein | phrog_11559 | unknown function | unknown function | 1 | 49097 | 49306 |
| YP_009202557.1 | NC_028844_p40 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31343 | 31543 |
| YP_009202525.1 | NC_028844_p8 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6443 | 6772 |
| YP_009202522.1 | NC_028844_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4378 | 5028 |
| YP_009202566.1 | NC_028844_p49 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 37088 | 37285 |
| YP_009202569.1 | NC_028844_p52 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 37640 | 38224 |
| YP_009202609.1 | NC_028844_p92 | HTH DNA-binding protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52150 | 52374 |
| YP_009202539.1 | NC_028844_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23502 | 23843 |
| YP_009202592.1 | NC_028844_p75 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 46991 | 47176 |