Genomic map of Mycobacterium phage Phatniss (NC_028844)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028844
Definition
Mycobacterium phage Phatniss, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
57293
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
101
%GC
61.33
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009202521.1 NC_028844_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3597 4352
YP_009202580.1 NC_028844_p63 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41806 42168
YP_009202544.1 NC_028844_p27 hypothetical protein phrog_411 unknown function unknown function 1 25945 26229
YP_009202536.1 NC_028844_p19 hypothetical protein phrog_346 minor tail protein tail 1 17901 20438
YP_009202538.1 NC_028844_p21 hypothetical protein phrog_2106 minor tail protein tail 1 22324 23484
YP_009202605.1 NC_028844_p88 hypothetical protein phrog_4126 unknown function unknown function 1 50691 50810
YP_009202548.1 NC_028844_p31 lysin A phrog_700 endolysin lysis 1 26823 28016
YP_009202540.1 NC_028844_p23 hypothetical protein phrog_2005 minor tail protein tail 1 23862 24119
YP_009202606.1 NC_028844_p89 hypothetical protein phrog_2278 unknown function unknown function 1 50807 51136
YP_009202615.1 NC_028844_p98 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 53597 55207
YP_009202588.1 NC_028844_p71 hypothetical protein phrog_2080 unknown function unknown function 1 45919 46179
YP_009202607.1 NC_028844_p90 hypothetical protein phrog_2247 unknown function unknown function 1 51133 51402
YP_009202578.1 NC_028844_p61 hypothetical protein phrog_2632 unknown function unknown function 1 40953 41234
YP_009202549.1 NC_028844_p32 lysin B phrog_102 endolysin lysis 1 28016 29017
YP_009202541.1 NC_028844_p24 minor tail protein phrog_2012 minor tail protein tail 1 24132 24770
YP_009202570.1 NC_028844_p53 hypothetical protein phrog_1849 unknown function unknown function 1 38333 38611
YP_009202527.1 NC_028844_p10 head-to-tail connector phrog_813 head-tail adaptor connector 1 7095 7499
YP_009202518.1 NC_028844_p1 terminase small subunit phrog_226 minor tail protein tail 1 109 564
YP_009202576.1 NC_028844_p59 hypothetical protein phrog_2078 unknown function unknown function 1 40574 40729
YP_009202531.1 NC_028844_p14 HNH homing endonuclease phrog_3593 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9487 10026
YP_009202529.1 NC_028844_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8532 9468
YP_009202563.1 NC_028844_p46 hypothetical protein phrog_5253 unknown function unknown function 1 36491 36790
YP_009202585.1 NC_028844_p68 tRNA methyl transferase phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 43397 44245
YP_009202562.1 NC_028844_p45 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 35050 35916
YP_009202555.1 NC_028844_p38 hypothetical protein phrog_1839 unknown function unknown function 1 31002 31094
YP_009202602.1 NC_028844_p85 hypothetical protein phrog_1091 unknown function unknown function 1 50038 50217
YP_009202601.1 NC_028844_p84 hypothetical protein phrog_3472 unknown function unknown function 1 49778 50041
YP_009202532.1 NC_028844_p15 tapemeasure phrog_1942 tail length tape measure protein tail 1 10026 13517
YP_009202552.1 NC_028844_p35 hypothetical protein phrog_2004 unknown function unknown function 1 29660 29893
YP_009202610.1 NC_028844_p93 hypothetical protein phrog_1869 unknown function unknown function 1 52371 52538
YP_009202586.1 NC_028844_p69 GIY-YIG homing endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 44388 44948
YP_009202617.1 NC_028844_p100 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 55413 56036
YP_009202547.1 NC_028844_p30 hypothetical protein phrog_747 unknown function unknown function 1 26593 26826
YP_009202520.1 NC_028844_p3 portal protein phrog_104 portal protein head and packaging 1 2240 3610
YP_009202558.1 NC_028844_p41 integrase phrog_1 integrase integration and excision 1 31939 33228
YP_009202590.1 NC_028844_p73 hypothetical protein phrog_1943 unknown function unknown function 1 46379 46573
YP_009202608.1 NC_028844_p91 hypothetical protein phrog_1467 unknown function unknown function 1 51399 52040
YP_009202519.1 NC_028844_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 572 2209
YP_009202561.1 NC_028844_p44 CRO protein phrog_3 transcriptional repressor transcription regulation 1 34757 34990
YP_009202603.1 NC_028844_p86 hypothetical protein phrog_1545 unknown function unknown function 1 50222 50359
YP_009202530.1 NC_028844_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8532 9083
YP_009202579.1 NC_028844_p62 HTH DNA-binding protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 41231 41809
YP_009202572.1 NC_028844_p55 WhiB phrog_1333 unknown function unknown function 1 38955 39449
YP_009202596.1 NC_028844_p79 hypothetical protein phrog_722 unknown function unknown function 1 47817 48005
YP_009202574.1 NC_028844_p57 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 39928 40212
YP_009202533.1 NC_028844_p16 minor tail protein phrog_106 minor tail protein tail 1 13518 15227
YP_009202571.1 NC_028844_p54 hypothetical protein phrog_658 unknown function unknown function 1 38608 38955
YP_009202598.1 NC_028844_p81 hypothetical protein phrog_1901 unknown function unknown function 1 48507 49100
YP_009202568.1 NC_028844_p51 hypothetical protein phrog_3381 unknown function unknown function 1 37470 37643
YP_009202591.1 NC_028844_p74 hypothetical protein phrog_1573 DNA methyltransferase other 1 46570 46998
YP_009202583.1 NC_028844_p66 hypothetical protein phrog_2704 unknown function unknown function 1 43108 43251
YP_009202587.1 NC_028844_p70 DNA binding protein phrog_3171 replication initiation protein DNA, RNA and nucleotide metabolism 1 44948 45922
YP_009202573.1 NC_028844_p56 hypothetical protein phrog_2096 unknown function unknown function 1 39446 39931
YP_009202546.1 NC_028844_p29 hypothetical protein phrog_1172 unknown function unknown function 1 26379 26519
YP_009202600.1 NC_028844_p83 hypothetical protein phrog_722 unknown function unknown function 1 49365 49781
YP_009202575.1 NC_028844_p58 HTH DNA-binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 40209 40574
YP_009202611.1 NC_028844_p94 hypothetical protein phrog_6481 unknown function unknown function 1 52545 52754
YP_009202523.1 NC_028844_p6 major capsid protein phrog_267 major head protein head and packaging 1 5047 5868
YP_009202582.1 NC_028844_p65 hypothetical protein phrog_6938 unknown function unknown function 1 42839 43108
YP_009202567.1 NC_028844_p50 hypothetical protein phrog_1816 unknown function unknown function 1 37282 37473
YP_009202526.1 NC_028844_p9 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6779 7105
YP_009202604.1 NC_028844_p87 hypothetical protein phrog_7643 unknown function unknown function 1 50356 50694
YP_009202556.1 NC_028844_p39 hypothetical protein phrog_3693 unknown function unknown function -1 31197 31343
YP_009202589.1 NC_028844_p72 hypothetical protein phrog_2730 unknown function unknown function 1 46179 46382
YP_009202554.1 NC_028844_p37 hypothetical protein phrog_1791 unknown function unknown function 1 30758 31009
YP_009202565.1 NC_028844_p48 hypothetical protein phrog_5563 unknown function unknown function 1 36999 37091
YP_009202534.1 NC_028844_p17 minor tail protein phrog_110 minor tail protein tail 1 15310 17019
YP_009202535.1 NC_028844_p18 minor tail protein phrog_732 minor tail protein tail 1 17074 17904
YP_009202577.1 NC_028844_p60 hypothetical protein phrog_1834 unknown function unknown function 1 40726 40956
YP_009202542.1 NC_028844_p25 hypothetical protein phrog_754 minor tail protein tail 1 24767 25591
YP_009202593.1 NC_028844_p76 hypothetical protein phrog_3647 unknown function unknown function 1 47173 47334
YP_009202553.1 NC_028844_p36 Dna-Q like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29880 30701
YP_009202537.1 NC_028844_p20 D-ala D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 20435 22321
YP_009202543.1 NC_028844_p26 HTH DNA-binding protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25597 25794
YP_009202524.1 NC_028844_p7 head-to-tail connector phrog_2377 head-tail adaptor Ad1 connector 1 5877 6446
YP_009202584.1 NC_028844_p67 hypothetical protein phrog_2070 unknown function unknown function 1 43248 43400
YP_009202612.1 NC_028844_p95 hypothetical protein phrog_1694 unknown function unknown function 1 52754 52951
YP_009202597.1 NC_028844_p80 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 48075 48446
YP_009202564.1 NC_028844_p47 hypothetical protein phrog_2025 unknown function unknown function 1 36787 37002
YP_009202616.1 NC_028844_p99 hypothetical protein phrog_1693 unknown function unknown function 1 55210 55416
YP_009202595.1 NC_028844_p78 hypothetical protein phrog_647 unknown function unknown function 1 47540 47824
YP_009202560.1 NC_028844_p43 repressor phrog_2838 transcriptional repressor transcription regulation -1 34018 34638
YP_009202559.1 NC_028844_p42 hypothetical protein phrog_1948 unknown function unknown function -1 33309 33755
YP_009202545.1 NC_028844_p28 hypothetical protein phrog_932 unknown function unknown function 1 26236 26382
YP_009202551.1 NC_028844_p34 hypothetical protein phrog_404 minor tail protein tail 1 29261 29635
YP_009202581.1 NC_028844_p64 hypothetical protein phrog_2233 unknown function unknown function 1 42165 42842
YP_009202528.1 NC_028844_p11 major tail subunit phrog_476 major tail protein tail 1 7609 8418
YP_009202594.1 NC_028844_p77 hypothetical protein phrog_3447 unknown function unknown function 1 47331 47543
YP_009202613.1 NC_028844_p96 hypothetical protein phrog_1186 unknown function unknown function 1 52948 53361
YP_009202614.1 NC_028844_p97 hypothetical protein phrog_1385 unknown function unknown function 1 53358 53600
YP_009202550.1 NC_028844_p33 holin phrog_443 holin lysis 1 29031 29264
YP_009202618.1 NC_028844_p101 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 56036 56380
YP_009202599.1 NC_028844_p82 hypothetical protein phrog_11559 unknown function unknown function 1 49097 49306
YP_009202557.1 NC_028844_p40 hypothetical protein phrog_2437 unknown function unknown function -1 31343 31543
YP_009202525.1 NC_028844_p8 head-to-tail connector phrog_763 head-tail adaptor connector 1 6443 6772
YP_009202522.1 NC_028844_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4378 5028
YP_009202566.1 NC_028844_p49 Xis phrog_66 excisionase and transcriptional regulator integration and excision 1 37088 37285
YP_009202569.1 NC_028844_p52 hypothetical protein phrog_1797 unknown function unknown function 1 37640 38224
YP_009202609.1 NC_028844_p92 HTH DNA-binding protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 52150 52374
YP_009202539.1 NC_028844_p22 hypothetical protein phrog_240 head protein head and packaging 1 23502 23843
YP_009202592.1 NC_028844_p75 hypothetical protein phrog_2591 unknown function unknown function 1 46991 47176