| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028846 |
Definition |
Mycobacterium phage ShedlockHolmes, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
61081 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
67.3 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009202717.1 | NC_028846_p86 | hypothetical protein | phrog_14052 | unknown function | unknown function | 1 | 54075 | 54557 |
| YP_009202697.1 | NC_028846_p66 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 43161 | 43331 |
| YP_009202719.1 | NC_028846_p88 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 54857 | 55324 |
| YP_009202670.1 | NC_028846_p39 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31068 | 31463 |
| YP_009202683.1 | NC_028846_p52 | hypothetical protein | phrog_33569 | unknown function | unknown function | 1 | 37207 | 37305 |
| YP_009202699.1 | NC_028846_p68 | glutaredoxin | phrog_1911 | unknown function | unknown function | 1 | 43528 | 44040 |
| YP_009202654.1 | NC_028846_p23 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 19339 | 19842 |
| YP_009202632.1 | NC_028846_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 51 | 194 |
| YP_009202692.1 | NC_028846_p61 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41433 | 42314 |
| YP_009202677.1 | NC_028846_p46 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35261 | 35683 |
| YP_009202638.1 | NC_028846_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1488 | 2912 |
| YP_009202647.1 | NC_028846_p16 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 9985 | 10419 |
| YP_009202648.1 | NC_028846_p17 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10567 | 11178 |
| YP_009202633.1 | NC_028846_p2 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 191 | 418 |
| YP_009202724.1 | NC_028846_p93 | hypothetical protein | phrog_12202 | unknown function | unknown function | 1 | 56947 | 57069 |
| YP_009202729.1 | NC_028846_p98 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 60030 | 60257 |
| YP_009202666.1 | NC_028846_p35 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 29046 | 29297 |
| YP_009202684.1 | NC_028846_p53 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 37302 | 37979 |
| YP_009202728.1 | NC_028846_p97 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 58904 | 59602 |
| YP_009202713.1 | NC_028846_p82 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 52145 | 52537 |
| YP_009202680.1 | NC_028846_p49 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36348 | 36725 |
| YP_009202708.1 | NC_028846_p77 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 50038 | 50421 |
| YP_009202681.1 | NC_028846_p50 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 36807 | 37046 |
| YP_009202667.1 | NC_028846_p36 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29284 | 30414 |
| YP_009202685.1 | NC_028846_p54 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37976 | 38245 |
| YP_009202675.1 | NC_028846_p44 | hypothetical protein | phrog_8155 | unknown function | unknown function | 1 | 33895 | 34239 |
| YP_009202651.1 | NC_028846_p20 | tapemeasure protein | phrog_971 | endolysin | lysis | 1 | 12197 | 16345 |
| YP_009202676.1 | NC_028846_p45 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 34315 | 35232 |
| YP_009202696.1 | NC_028846_p65 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42949 | 43161 |
| YP_009202643.1 | NC_028846_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7945 | 8868 |
| YP_009202709.1 | NC_028846_p78 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50418 | 50690 |
| YP_009202668.1 | NC_028846_p37 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 30411 | 30650 |
| YP_009202694.1 | NC_028846_p63 | hypothetical protein | phrog_8427 | unknown function | unknown function | 1 | 42459 | 42680 |
| YP_009202652.1 | NC_028846_p21 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16440 | 17576 |
| YP_009202678.1 | NC_028846_p47 | CRO, HTH DNA binding domain protein | phrog_20078 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36016 | 36135 |
| YP_009202727.1 | NC_028846_p96 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 58453 | 58719 |
| YP_009202636.1 | NC_028846_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1083 | 1277 |
| YP_009202689.1 | NC_028846_p58 | DnaQ | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40308 | 40865 |
| YP_009202653.1 | NC_028846_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17576 | 19339 |
| YP_009202656.1 | NC_028846_p25 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 20994 | 21302 |
| YP_009202703.1 | NC_028846_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47403 | 47735 |
| YP_009202655.1 | NC_028846_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19891 | 20979 |
| YP_009202715.1 | NC_028846_p84 | SprT | phrog_2342 | unknown function | unknown function | 1 | 52811 | 53695 |
| YP_009202700.1 | NC_028846_p69 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44136 | 44378 |
| YP_009202645.1 | NC_028846_p14 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 9370 | 9723 |
| YP_009202673.1 | NC_028846_p42 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 31949 | 32251 |
| YP_009202706.1 | NC_028846_p75 | hypothetical protein | phrog_15207 | unknown function | unknown function | 1 | 48921 | 49085 |
| YP_009202686.1 | NC_028846_p55 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38242 | 39591 |
| YP_009202672.1 | NC_028846_p41 | hypothetical protein | phrog_9364 | unknown function | unknown function | 1 | 31710 | 31895 |
| YP_009202725.1 | NC_028846_p94 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 57204 | 58043 |
| YP_009202695.1 | NC_028846_p64 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 42677 | 42952 |
| YP_009202701.1 | NC_028846_p70 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44378 | 44749 |
| YP_009202671.1 | NC_028846_p40 | hypothetical protein | phrog_11692 | unknown function | unknown function | 1 | 31460 | 31651 |
| YP_009202687.1 | NC_028846_p56 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39584 | 40003 |
| YP_009202665.1 | NC_028846_p34 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28702 | 29049 |
| YP_009202716.1 | NC_028846_p85 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 53692 | 54081 |
| YP_009202723.1 | NC_028846_p92 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 56690 | 56947 |
| YP_009202658.1 | NC_028846_p27 | minor tail protein | phrog_3901 | unknown function | unknown function | 1 | 23643 | 23930 |
| YP_009202644.1 | NC_028846_p13 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8987 | 9370 |
| YP_009202637.1 | NC_028846_p6 | small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1277 | 1504 |
| YP_009202702.1 | NC_028846_p71 | DNA primase/helicase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44792 | 47401 |
| YP_009202731.1 | NC_028846_p100 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60729 | 61016 |
| YP_009202650.1 | NC_028846_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11349 | 11783 |
| YP_009202690.1 | NC_028846_p59 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 40862 | 41131 |
| YP_009202663.1 | NC_028846_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27460 | 28248 |
| YP_009202640.1 | NC_028846_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4427 | 7018 |
| YP_009202641.1 | NC_028846_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7015 | 7215 |
| YP_009202721.1 | NC_028846_p90 | hypothetical protein | phrog_15782 | unknown function | unknown function | 1 | 55904 | 56215 |
| YP_009202688.1 | NC_028846_p57 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40003 | 40296 |
| YP_009202720.1 | NC_028846_p89 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 55314 | 55907 |
| YP_009202679.1 | NC_028846_p48 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36132 | 36344 |
| YP_009202726.1 | NC_028846_p95 | hypothetical protein | phrog_16846 | unknown function | unknown function | 1 | 58157 | 58405 |
| YP_009202707.1 | NC_028846_p76 | peptidase | phrog_908 | unknown function | unknown function | 1 | 49078 | 49995 |
| YP_009202659.1 | NC_028846_p28 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23930 | 24949 |
| YP_009202634.1 | NC_028846_p3 | hypothetical protein | phrog_14141 | unknown function | unknown function | 1 | 430 | 570 |
| YP_009202730.1 | NC_028846_p99 | hypothetical protein | phrog_15061 | unknown function | unknown function | 1 | 60269 | 60727 |
| YP_009202649.1 | NC_028846_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11349 | 12193 |
| YP_009202691.1 | NC_028846_p60 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41128 | 41436 |
| YP_009202705.1 | NC_028846_p74 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48478 | 48924 |
| YP_009202712.1 | NC_028846_p81 | hypothetical protein | phrog_1006 | unknown function | unknown function | 1 | 51455 | 52018 |
| YP_009202657.1 | NC_028846_p26 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 21295 | 23643 |
| YP_009202642.1 | NC_028846_p11 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7290 | 7874 |
| YP_009202669.1 | NC_028846_p38 | hypothetical protein | phrog_16894 | unknown function | unknown function | 1 | 30689 | 30874 |
| YP_009202660.1 | NC_028846_p29 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25042 | 25398 |
| YP_009202682.1 | NC_028846_p51 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 37043 | 37210 |
| YP_009202698.1 | NC_028846_p67 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43331 | 43447 |
| YP_009202711.1 | NC_028846_p80 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 51112 | 51324 |
| YP_009202639.1 | NC_028846_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2923 | 4488 |
| YP_009202635.1 | NC_028846_p4 | hypothetical protein | phrog_19409 | unknown function | unknown function | 1 | 652 | 1008 |
| YP_009202710.1 | NC_028846_p79 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 50808 | 51050 |
| YP_009202714.1 | NC_028846_p83 | hypothetical protein | phrog_7536 | unknown function | unknown function | 1 | 52635 | 52814 |
| YP_009202646.1 | NC_028846_p15 | head-to-tail connector | phrog_387 | neck protein | connector | 1 | 9704 | 9988 |
| YP_009202664.1 | NC_028846_p33 | holin | phrog_565 | holin | lysis | 1 | 28259 | 28705 |
| YP_009202718.1 | NC_028846_p87 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 54566 | 54754 |
| YP_009202674.1 | NC_028846_p43 | integrase | phrog_1 | integrase | integration and excision | 1 | 32615 | 33895 |
| YP_009202704.1 | NC_028846_p73 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47799 | 48485 |
| YP_009202662.1 | NC_028846_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 25778 | 27463 |
| YP_009202722.1 | NC_028846_p91 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 56212 | 56475 |
| YP_009202693.1 | NC_028846_p62 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42311 | 42487 |
| YP_009202661.1 | NC_028846_p30 | hypothetical protein | phrog_1540 | unknown function | unknown function | 1 | 25398 | 25781 |