Genomic map of Mycobacterium phage ShedlockHolmes (NC_028846)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028846
Definition
Mycobacterium phage ShedlockHolmes, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus.
DB of origin
REFSEQ
Length
61081
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
100
%GC
67.3
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009202717.1 NC_028846_p86 hypothetical protein phrog_14052 unknown function unknown function 1 54075 54557
YP_009202697.1 NC_028846_p66 hypothetical protein phrog_542 unknown function unknown function 1 43161 43331
YP_009202719.1 NC_028846_p88 hypothetical protein phrog_2822 unknown function unknown function 1 54857 55324
YP_009202670.1 NC_028846_p39 hypothetical protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 31068 31463
YP_009202683.1 NC_028846_p52 hypothetical protein phrog_33569 unknown function unknown function 1 37207 37305
YP_009202699.1 NC_028846_p68 glutaredoxin phrog_1911 unknown function unknown function 1 43528 44040
YP_009202654.1 NC_028846_p23 minor tail protein phrog_1697 minor tail protein tail 1 19339 19842
YP_009202632.1 NC_028846_p1 hypothetical protein phrog_5391 unknown function unknown function 1 51 194
YP_009202692.1 NC_028846_p61 exonuclease phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 41433 42314
YP_009202677.1 NC_028846_p46 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 35261 35683
YP_009202638.1 NC_028846_p7 terminase large subunit phrog_2 terminase large subunit head and packaging 1 1488 2912
YP_009202647.1 NC_028846_p16 head-to-tail connector phrog_123 tail terminator connector 1 9985 10419
YP_009202648.1 NC_028846_p17 major tail subunit phrog_117 major tail protein tail 1 10567 11178
YP_009202633.1 NC_028846_p2 hypothetical protein phrog_2293 unknown function unknown function 1 191 418
YP_009202724.1 NC_028846_p93 hypothetical protein phrog_12202 unknown function unknown function 1 56947 57069
YP_009202729.1 NC_028846_p98 hypothetical protein phrog_747 unknown function unknown function 1 60030 60257
YP_009202666.1 NC_028846_p35 hypothetical protein phrog_1738 unknown function unknown function 1 29046 29297
YP_009202684.1 NC_028846_p53 hypothetical protein phrog_2286 unknown function unknown function 1 37302 37979
YP_009202728.1 NC_028846_p97 hypothetical protein phrog_4095 unknown function unknown function 1 58904 59602
YP_009202713.1 NC_028846_p82 hypothetical protein phrog_6045 unknown function unknown function 1 52145 52537
YP_009202680.1 NC_028846_p49 hypothetical protein phrog_2908 unknown function unknown function 1 36348 36725
YP_009202708.1 NC_028846_p77 hypothetical protein phrog_549 unknown function unknown function 1 50038 50421
YP_009202681.1 NC_028846_p50 hypothetical protein phrog_6733 unknown function unknown function 1 36807 37046
YP_009202667.1 NC_028846_p36 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 29284 30414
YP_009202685.1 NC_028846_p54 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 37976 38245
YP_009202675.1 NC_028846_p44 hypothetical protein phrog_8155 unknown function unknown function 1 33895 34239
YP_009202651.1 NC_028846_p20 tapemeasure protein phrog_971 endolysin lysis 1 12197 16345
YP_009202676.1 NC_028846_p45 hypothetical protein phrog_950 unknown function unknown function -1 34315 35232
YP_009202696.1 NC_028846_p65 hypothetical protein phrog_1581 unknown function unknown function 1 42949 43161
YP_009202643.1 NC_028846_p12 major capsid protein phrog_10 major head protein head and packaging 1 7945 8868
YP_009202709.1 NC_028846_p78 hypothetical protein phrog_1338 unknown function unknown function 1 50418 50690
YP_009202668.1 NC_028846_p37 hypothetical protein phrog_1042 unknown function unknown function 1 30411 30650
YP_009202694.1 NC_028846_p63 hypothetical protein phrog_8427 unknown function unknown function 1 42459 42680
YP_009202652.1 NC_028846_p21 minor tail protein phrog_106 minor tail protein tail 1 16440 17576
YP_009202678.1 NC_028846_p47 CRO, HTH DNA binding domain protein phrog_20078 DNA binding protein DNA, RNA and nucleotide metabolism 1 36016 36135
YP_009202727.1 NC_028846_p96 hypothetical protein phrog_6135 unknown function unknown function 1 58453 58719
YP_009202636.1 NC_028846_p5 hypothetical protein phrog_2622 unknown function unknown function 1 1083 1277
YP_009202689.1 NC_028846_p58 DnaQ phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 40308 40865
YP_009202653.1 NC_028846_p22 minor tail protein phrog_110 minor tail protein tail 1 17576 19339
YP_009202656.1 NC_028846_p25 minor tail protein phrog_1736 minor tail protein tail 1 20994 21302
YP_009202703.1 NC_028846_p72 hypothetical protein singleton unknown function unknown function 1 47403 47735
YP_009202655.1 NC_028846_p24 minor tail protein phrog_1565 minor tail protein tail 1 19891 20979
YP_009202715.1 NC_028846_p84 SprT phrog_2342 unknown function unknown function 1 52811 53695
YP_009202700.1 NC_028846_p69 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 44136 44378
YP_009202645.1 NC_028846_p14 head-to-tail connector phrog_763 head-tail adaptor connector 1 9370 9723
YP_009202673.1 NC_028846_p42 hypothetical protein phrog_658 unknown function unknown function -1 31949 32251
YP_009202706.1 NC_028846_p75 hypothetical protein phrog_15207 unknown function unknown function 1 48921 49085
YP_009202686.1 NC_028846_p55 hypothetical protein phrog_2781 unknown function unknown function 1 38242 39591
YP_009202672.1 NC_028846_p41 hypothetical protein phrog_9364 unknown function unknown function 1 31710 31895
YP_009202725.1 NC_028846_p94 hypothetical protein phrog_2433 unknown function unknown function 1 57204 58043
YP_009202695.1 NC_028846_p64 hypothetical protein phrog_5466 unknown function unknown function 1 42677 42952
YP_009202701.1 NC_028846_p70 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44378 44749
YP_009202671.1 NC_028846_p40 hypothetical protein phrog_11692 unknown function unknown function 1 31460 31651
YP_009202687.1 NC_028846_p56 hypothetical protein phrog_3186 unknown function unknown function 1 39584 40003
YP_009202665.1 NC_028846_p34 hypothetical protein phrog_3413 unknown function unknown function 1 28702 29049
YP_009202716.1 NC_028846_p85 hypothetical protein phrog_7731 unknown function unknown function 1 53692 54081
YP_009202723.1 NC_028846_p92 hypothetical protein phrog_4560 unknown function unknown function 1 56690 56947
YP_009202658.1 NC_028846_p27 minor tail protein phrog_3901 unknown function unknown function 1 23643 23930
YP_009202644.1 NC_028846_p13 head-to-tail connector phrog_137 head-tail adaptor Ad1 connector 1 8987 9370
YP_009202637.1 NC_028846_p6 small subunit phrog_1459 terminase small subunit head and packaging 1 1277 1504
YP_009202702.1 NC_028846_p71 DNA primase/helicase phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 44792 47401
YP_009202731.1 NC_028846_p100 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 60729 61016
YP_009202650.1 NC_028846_p19 tail assembly chaperone phrog_1861 unknown function unknown function 1 11349 11783
YP_009202690.1 NC_028846_p59 hypothetical protein phrog_2596 unknown function unknown function 1 40862 41131
YP_009202663.1 NC_028846_p32 lysin B phrog_102 endolysin lysis 1 27460 28248
YP_009202640.1 NC_028846_p9 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 4427 7018
YP_009202641.1 NC_028846_p10 hypothetical protein phrog_1757 unknown function unknown function 1 7015 7215
YP_009202721.1 NC_028846_p90 hypothetical protein phrog_15782 unknown function unknown function 1 55904 56215
YP_009202688.1 NC_028846_p57 hypothetical protein phrog_1956 unknown function unknown function 1 40003 40296
YP_009202720.1 NC_028846_p89 hypothetical protein phrog_2493 unknown function unknown function 1 55314 55907
YP_009202679.1 NC_028846_p48 Xis phrog_66 excisionase and transcriptional regulator integration and excision 1 36132 36344
YP_009202726.1 NC_028846_p95 hypothetical protein phrog_16846 unknown function unknown function 1 58157 58405
YP_009202707.1 NC_028846_p76 peptidase phrog_908 unknown function unknown function 1 49078 49995
YP_009202659.1 NC_028846_p28 minor tail protein phrog_416 minor tail protein tail 1 23930 24949
YP_009202634.1 NC_028846_p3 hypothetical protein phrog_14141 unknown function unknown function 1 430 570
YP_009202730.1 NC_028846_p99 hypothetical protein phrog_15061 unknown function unknown function 1 60269 60727
YP_009202649.1 NC_028846_p18 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 11349 12193
YP_009202691.1 NC_028846_p60 hypothetical protein phrog_2870 unknown function unknown function 1 41128 41436
YP_009202705.1 NC_028846_p74 hypothetical protein phrog_3478 unknown function unknown function 1 48478 48924
YP_009202712.1 NC_028846_p81 hypothetical protein phrog_1006 unknown function unknown function 1 51455 52018
YP_009202657.1 NC_028846_p26 minor tail protein phrog_746 minor tail protein tail 1 21295 23643
YP_009202642.1 NC_028846_p11 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 7290 7874
YP_009202669.1 NC_028846_p38 hypothetical protein phrog_16894 unknown function unknown function 1 30689 30874
YP_009202660.1 NC_028846_p29 hypothetical protein phrog_240 head protein head and packaging 1 25042 25398
YP_009202682.1 NC_028846_p51 hypothetical protein phrog_2654 unknown function unknown function 1 37043 37210
YP_009202698.1 NC_028846_p67 hypothetical protein phrog_2388 unknown function unknown function 1 43331 43447
YP_009202711.1 NC_028846_p80 hypothetical protein phrog_5546 unknown function unknown function 1 51112 51324
YP_009202639.1 NC_028846_p8 portal protein phrog_104 portal protein head and packaging 1 2923 4488
YP_009202635.1 NC_028846_p4 hypothetical protein phrog_19409 unknown function unknown function 1 652 1008
YP_009202710.1 NC_028846_p79 hypothetical protein phrog_7658 unknown function unknown function 1 50808 51050
YP_009202714.1 NC_028846_p83 hypothetical protein phrog_7536 unknown function unknown function 1 52635 52814
YP_009202646.1 NC_028846_p15 head-to-tail connector phrog_387 neck protein connector 1 9704 9988
YP_009202664.1 NC_028846_p33 holin phrog_565 holin lysis 1 28259 28705
YP_009202718.1 NC_028846_p87 hypothetical protein phrog_666 unknown function unknown function 1 54566 54754
YP_009202674.1 NC_028846_p43 integrase phrog_1 integrase integration and excision 1 32615 33895
YP_009202704.1 NC_028846_p73 RusA phrog_3055 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47799 48485
YP_009202662.1 NC_028846_p31 lysin A phrog_317 endolysin lysis 1 25778 27463
YP_009202722.1 NC_028846_p91 hypothetical protein phrog_2074 unknown function unknown function 1 56212 56475
YP_009202693.1 NC_028846_p62 hypothetical protein phrog_3492 unknown function unknown function 1 42311 42487
YP_009202661.1 NC_028846_p30 hypothetical protein phrog_1540 unknown function unknown function 1 25398 25781