| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028849 |
Definition |
Mycobacterium phage Luchador, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53387 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
62.11 |
Number of singletons |
9 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009203118.1 | NC_028849_p58 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 38522 | 38674 |
| YP_009203103.1 | NC_028849_p43 | hypothetical protein | phrog_9466 | unknown function | unknown function | -1 | 30424 | 30648 |
| YP_009203116.1 | NC_028849_p56 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37528 | 37767 |
| YP_009203152.1 | NC_028849_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50334 | 50531 |
| YP_009203143.1 | NC_028849_p83 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 47817 | 47960 |
| YP_009203075.1 | NC_028849_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12226 | 13173 |
| YP_009203132.1 | NC_028849_p72 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43659 | 43928 |
| YP_009203079.1 | NC_028849_p19 | head-to-tail connector | phrog_830 | head-tail connector protein | connector | 1 | 14084 | 14293 |
| YP_009203136.1 | NC_028849_p76 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 45159 | 45554 |
| YP_009203144.1 | NC_028849_p84 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 47965 | 48225 |
| YP_009203080.1 | NC_028849_p20 | head-to-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 14290 | 14658 |
| YP_009203100.1 | NC_028849_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29897 | 30058 |
| YP_009203093.1 | NC_028849_p33 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 25731 | 26627 |
| YP_009203063.1 | NC_028849_p3 | hypothetical protein | phrog_3585 | immunity protein | other | 1 | 2067 | 2405 |
| YP_009203130.1 | NC_028849_p70 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42552 | 43298 |
| YP_009203115.1 | NC_028849_p55 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 37328 | 37531 |
| YP_009203099.1 | NC_028849_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29733 | 29900 |
| YP_009203098.1 | NC_028849_p38 | ParB | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 29268 | 29537 |
| YP_009203145.1 | NC_028849_p85 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 48290 | 48736 |
| YP_009203150.1 | NC_028849_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49736 | 50098 |
| YP_009203065.1 | NC_028849_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2735 | 3208 |
| YP_009203156.1 | NC_028849_p96 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51730 | 52062 |
| YP_009203062.1 | NC_028849_p2 | hypothetical protein | phrog_5234 | unknown function | unknown function | 1 | 1039 | 2088 |
| YP_009203090.1 | NC_028849_p30 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22469 | 22918 |
| YP_009203109.1 | NC_028849_p49 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 31952 | 33745 |
| YP_009203097.1 | NC_028849_p37 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 28694 | 29275 |
| YP_009203094.1 | NC_028849_p34 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 26637 | 27029 |
| YP_009203069.1 | NC_028849_p9 | holin | phrog_526 | holin | lysis | 1 | 6145 | 6531 |
| YP_009203087.1 | NC_028849_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19388 | 20410 |
| YP_009203123.1 | NC_028849_p63 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40782 | 41264 |
| YP_009203120.1 | NC_028849_p60 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 39442 | 39939 |
| YP_009203081.1 | NC_028849_p21 | head-to-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14658 | 14993 |
| YP_009203108.1 | NC_028849_p48 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 31610 | 31942 |
| YP_009203076.1 | NC_028849_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13267 | 13500 |
| YP_009203064.1 | NC_028849_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2402 | 2698 |
| YP_009203135.1 | NC_028849_p75 | RecB-like recombinase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44356 | 45162 |
| YP_009203125.1 | NC_028849_p65 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 41346 | 41501 |
| YP_009203067.1 | NC_028849_p7 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 4428 | 4568 |
| YP_009203147.1 | NC_028849_p87 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 49115 | 49336 |
| YP_009203154.1 | NC_028849_p94 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50694 | 51404 |
| YP_009203061.1 | NC_028849_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 369 | 1055 |
| YP_009203119.1 | NC_028849_p59 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 38678 | 39445 |
| YP_009203077.1 | NC_028849_p17 | head-to-tail connector | phrog_3101 | unknown function | unknown function | 1 | 13500 | 13706 |
| YP_009203092.1 | NC_028849_p32 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23273 | 25723 |
| YP_009203117.1 | NC_028849_p57 | DNA binding protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37764 | 38522 |
| YP_009203073.1 | NC_028849_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10757 | 11635 |
| YP_009203149.1 | NC_028849_p89 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49500 | 49724 |
| YP_009203091.1 | NC_028849_p31 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22915 | 23271 |
| YP_009203141.1 | NC_028849_p81 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47087 | 47356 |
| YP_009203139.1 | NC_028849_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46628 | 46891 |
| YP_009203121.1 | NC_028849_p61 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39939 | 40565 |
| YP_009203085.1 | NC_028849_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16146 | 16547 |
| YP_009203101.1 | NC_028849_p41 | hypothetical protein | phrog_13926 | unknown function | unknown function | -1 | 30055 | 30267 |
| YP_009203114.1 | NC_028849_p54 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 35289 | 37328 |
| YP_009203131.1 | NC_028849_p71 | hypothetical protein | phrog_2903 | unknown function | unknown function | -1 | 43360 | 43662 |
| YP_009203096.1 | NC_028849_p36 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 27458 | 27769 |
| YP_009203083.1 | NC_028849_p23 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15438 | 16031 |
| YP_009203155.1 | NC_028849_p95 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 51407 | 51613 |
| YP_009203127.1 | NC_028849_p67 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41829 | 41978 |
| YP_009203105.1 | NC_028849_p45 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 31016 | 31237 |
| YP_009203133.1 | NC_028849_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43925 | 44089 |
| YP_009203071.1 | NC_028849_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7549 | 9303 |
| YP_009203129.1 | NC_028849_p69 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 42328 | 42522 |
| YP_009203126.1 | NC_028849_p66 | HTH DNA binding domain protein | phrog_1123 | unknown function | unknown function | -1 | 41572 | 41832 |
| YP_009203089.1 | NC_028849_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20622 | 22421 |
| YP_009203142.1 | NC_028849_p82 | SprT | phrog_1006 | unknown function | unknown function | -1 | 47353 | 47820 |
| YP_009203137.1 | NC_028849_p77 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45567 | 46094 |
| YP_009203134.1 | NC_028849_p74 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 44086 | 44307 |
| YP_009203086.1 | NC_028849_p26 | hypothetical protein | phrog_305 | tail length tape measure protein | tail | 1 | 16953 | 19361 |
| YP_009203153.1 | NC_028849_p93 | hypothetical protein | phrog_6093 | unknown function | unknown function | -1 | 50528 | 50686 |
| YP_009203068.1 | NC_028849_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4568 | 6148 |
| YP_009203146.1 | NC_028849_p86 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 48765 | 49118 |
| YP_009203113.1 | NC_028849_p53 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34750 | 35277 |
| YP_009203148.1 | NC_028849_p88 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49336 | 49503 |
| YP_009203151.1 | NC_028849_p91 | hypothetical protein | phrog_10592 | unknown function | unknown function | -1 | 50107 | 50337 |
| YP_009203072.1 | NC_028849_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9300 | 10760 |
| YP_009203128.1 | NC_028849_p68 | hypothetical protein | phrog_5101 | unknown function | unknown function | -1 | 42044 | 42331 |
| YP_009203084.1 | NC_028849_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16146 | 16960 |
| YP_009203082.1 | NC_028849_p22 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 15003 | 15419 |
| YP_009203104.1 | NC_028849_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 30645 | 31016 |
| YP_009203078.1 | NC_028849_p18 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13710 | 14087 |
| YP_009203122.1 | NC_028849_p62 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40399 | 40785 |
| YP_009203095.1 | NC_028849_p35 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 27109 | 27465 |
| YP_009203066.1 | NC_028849_p6 | structural protein | phrog_1260 | minor tail protein | tail | 1 | 3290 | 4267 |
| YP_009203110.1 | NC_028849_p50 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 33753 | 34088 |
| YP_009203070.1 | NC_028849_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6567 | 7526 |
| YP_009203088.1 | NC_028849_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20407 | 20622 |
| YP_009203106.1 | NC_028849_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31237 | 31392 |
| YP_009203124.1 | NC_028849_p64 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 41215 | 41349 |
| YP_009203107.1 | NC_028849_p47 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 31389 | 31613 |
| YP_009203138.1 | NC_028849_p78 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 46443 | 46628 |
| YP_009203102.1 | NC_028849_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30260 | 30427 |
| YP_009203111.1 | NC_028849_p51 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 34088 | 34435 |
| YP_009203140.1 | NC_028849_p80 | hypothetical protein | phrog_8086 | unknown function | unknown function | -1 | 46866 | 47087 |
| YP_009203074.1 | NC_028849_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11684 | 12196 |
| YP_009203112.1 | NC_028849_p52 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 34419 | 34634 |