| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028851 |
Definition |
Paenibacillus phage Fern, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sitaravirus. |
DB of origin |
REFSEQ |
Length |
37995 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
41.85 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009203236.1 | NC_028851_p34 | helix-turn-helix domain Cro/C1 family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 21655 | 21885 |
| YP_009203270.1 | NC_028851_p68 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37603 | 37941 |
| YP_009203224.1 | NC_028851_p22 | transposase | phrog_1299 | holin | lysis | 1 | 14883 | 15125 |
| YP_009203248.1 | NC_028851_p46 | hypothetical protein | phrog_5189 | unknown function | unknown function | 1 | 27223 | 27420 |
| YP_009203215.1 | NC_028851_p13 | hypothetical protein | phrog_7848 | unknown function | unknown function | 1 | 7481 | 7735 |
| YP_009203259.1 | NC_028851_p57 | hypothetical protein | phrog_30569 | unknown function | unknown function | 1 | 32905 | 33213 |
| YP_009203261.1 | NC_028851_p59 | hypothetical protein | phrog_19268 | unknown function | unknown function | 1 | 33536 | 33727 |
| YP_009203249.1 | NC_028851_p47 | DNA recombinational protein RecT | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 27417 | 28337 |
| YP_009203227.1 | NC_028851_p25 | hypothetical protein | phrog_14009 | unknown function | unknown function | -1 | 15826 | 15951 |
| YP_009203256.1 | NC_028851_p54 | hypothetical protein | phrog_19477 | unknown function | unknown function | 1 | 32074 | 32280 |
| YP_009203221.1 | NC_028851_p19 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 13824 | 13985 |
| YP_009203266.1 | NC_028851_p64 | ArpU-like transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 35270 | 35710 |
| YP_009203267.1 | NC_028851_p65 | antitoxin HicB | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 35850 | 36272 |
| YP_009203222.1 | NC_028851_p20 | bacteriocin biosynthesis protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 13966 | 14205 |
| YP_009203216.1 | NC_028851_p14 | tail tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 7795 | 10431 |
| YP_009203263.1 | NC_028851_p61 | hypothetical protein | phrog_6998 | unknown function | unknown function | 1 | 33835 | 34047 |
| YP_009203269.1 | NC_028851_p67 | transglycosylase | phrog_1315 | unknown function | unknown function | 1 | 37340 | 37606 |
| YP_009203254.1 | NC_028851_p52 | hypothetical protein | phrog_6868 | unknown function | unknown function | 1 | 31549 | 31860 |
| YP_009203238.1 | NC_028851_p36 | hypothetical protein | phrog_13096 | unknown function | unknown function | 1 | 22166 | 22312 |
| YP_009203260.1 | NC_028851_p58 | hypothetical protein | phrog_18759 | unknown function | unknown function | 1 | 33220 | 33543 |
| YP_009203206.1 | NC_028851_p4 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 3303 | 4025 |
| YP_009203207.1 | NC_028851_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4022 | 5152 |
| YP_009203234.1 | NC_028851_p32 | integrase | phrog_1 | integrase | integration and excision | -1 | 19634 | 20779 |
| YP_009203230.1 | NC_028851_p28 | YolD-like protein | phrog_8703 | unknown function | unknown function | 1 | 18473 | 18727 |
| YP_009203240.1 | NC_028851_p38 | hypothetical protein | phrog_13601 | unknown function | unknown function | 1 | 23105 | 23488 |
| YP_009203265.1 | NC_028851_p63 | hypothetical protein | phrog_5494 | unknown function | unknown function | 1 | 34761 | 35219 |
| YP_009203241.1 | NC_028851_p39 | hypothetical protein | phrog_10535 | unknown function | unknown function | 1 | 23485 | 23715 |
| YP_009203217.1 | NC_028851_p15 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 10428 | 11279 |
| YP_009203211.1 | NC_028851_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5873 | 6301 |
| YP_009203231.1 | NC_028851_p29 | hypothetical protein | phrog_6785 | unknown function | unknown function | 1 | 18840 | 19037 |
| YP_009203244.1 | NC_028851_p42 | hypothetical protein | phrog_14421 | unknown function | unknown function | 1 | 24626 | 25180 |
| YP_009203218.1 | NC_028851_p16 | endopeptidase tail protein | phrog_538 | minor tail protein | tail | 1 | 11282 | 12400 |
| YP_009203210.1 | NC_028851_p8 | head-tail adaptor protein | phrog_25 | head closure Hc1 | connector | 1 | 5556 | 5873 |
| YP_009203226.1 | NC_028851_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15601 | 15753 |
| YP_009203247.1 | NC_028851_p45 | AAA domain ATPase | phrog_1499 | unknown function | unknown function | 1 | 25697 | 27226 |
| YP_009203253.1 | NC_028851_p51 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 30224 | 31552 |
| YP_009203258.1 | NC_028851_p56 | hypothetical protein | phrog_33780 | unknown function | unknown function | 1 | 32685 | 32900 |
| YP_009203225.1 | NC_028851_p23 | hypothetical protein | phrog_9393 | unknown function | unknown function | 1 | 15240 | 15416 |
| YP_009203205.1 | NC_028851_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2066 | 3319 |
| YP_009203262.1 | NC_028851_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33681 | 33845 |
| YP_009203252.1 | NC_028851_p50 | primosome component-like protein | phrog_2514 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 29434 | 30264 |
| YP_009203229.1 | NC_028851_p27 | hypothetical protein | phrog_3711 | unknown function | unknown function | 1 | 18148 | 18369 |
| YP_009203233.1 | NC_028851_p31 | hypothetical protein | phrog_21019 | unknown function | unknown function | -1 | 19404 | 19607 |
| YP_009203212.1 | NC_028851_p10 | tail protein | phrog_176 | tail terminator | connector | 1 | 6285 | 6680 |
| YP_009203208.1 | NC_028851_p6 | hypothetical protein | phrog_6793 | unknown function | unknown function | 1 | 5130 | 5303 |
| YP_009203213.1 | NC_028851_p11 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 6682 | 7119 |
| YP_009203209.1 | NC_028851_p7 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5296 | 5559 |
| YP_009203242.1 | NC_028851_p40 | hypothetical protein | phrog_13275 | unknown function | unknown function | 1 | 23699 | 23872 |
| YP_009203255.1 | NC_028851_p53 | hypothetical protein | phrog_25160 | unknown function | unknown function | 1 | 31875 | 32024 |
| YP_009203250.1 | NC_028851_p48 | metallo-hydrolase | phrog_392 | metal-dependent hydrolase | other | 1 | 28350 | 29108 |
| YP_009203232.1 | NC_028851_p30 | hypothetical protein | phrog_3502 | unknown function | unknown function | 1 | 19027 | 19284 |
| YP_009203251.1 | NC_028851_p49 | hypothetical protein | phrog_7503 | unknown function | unknown function | 1 | 29105 | 29419 |
| YP_009203214.1 | NC_028851_p12 | hypothetical protein | phrog_7902 | unknown function | unknown function | 1 | 7116 | 7454 |
| YP_009203220.1 | NC_028851_p18 | hypothetical protein | phrog_6220 | unknown function | unknown function | 1 | 13480 | 13827 |
| YP_009203268.1 | NC_028851_p66 | toxin HicA | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 36334 | 36549 |
| YP_009203219.1 | NC_028851_p17 | tail protein | phrog_5339 | virion structural protein | head and packaging | 1 | 12397 | 13479 |
| YP_009203228.1 | NC_028851_p26 | toxin-like protein | phrog_18811 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 16105 | 18135 |
| YP_009203237.1 | NC_028851_p35 | helix-turn-helix domain transcriptional regulator | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 21886 | 22098 |
| YP_009203223.1 | NC_028851_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_3088 | amidase | lysis | 1 | 14202 | 14873 |
| YP_009203243.1 | NC_028851_p41 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 23877 | 24629 |
| YP_009203264.1 | NC_028851_p62 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34044 | 34601 |
| YP_009203245.1 | NC_028851_p43 | hypothetical protein | phrog_8406 | unknown function | unknown function | 1 | 25155 | 25418 |
| YP_009203203.1 | NC_028851_p1 | terminase small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 50 | 364 |
| YP_009203246.1 | NC_028851_p44 | hypothetical protein | phrog_8288 | unknown function | unknown function | 1 | 25423 | 25713 |
| YP_009203235.1 | NC_028851_p33 | helix-turn-helix domain XRE family transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 20842 | 21513 |
| YP_009203204.1 | NC_028851_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 345 | 2069 |
| YP_009203257.1 | NC_028851_p55 | yopX family protein | phrog_98 | unknown function | unknown function | 1 | 32306 | 32692 |
| YP_009203239.1 | NC_028851_p37 | DNA binding antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 22338 | 23075 |