Genomic map of Paenibacillus phage Fern (NC_028851)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028851
Definition
Paenibacillus phage Fern, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sitaravirus.
DB of origin
REFSEQ
Length
37995
Host Name
Paenibacillus larvae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
41.85
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009203236.1 NC_028851_p34 helix-turn-helix domain Cro/C1 family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 21655 21885
YP_009203270.1 NC_028851_p68 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37603 37941
YP_009203224.1 NC_028851_p22 transposase phrog_1299 holin lysis 1 14883 15125
YP_009203248.1 NC_028851_p46 hypothetical protein phrog_5189 unknown function unknown function 1 27223 27420
YP_009203215.1 NC_028851_p13 hypothetical protein phrog_7848 unknown function unknown function 1 7481 7735
YP_009203259.1 NC_028851_p57 hypothetical protein phrog_30569 unknown function unknown function 1 32905 33213
YP_009203261.1 NC_028851_p59 hypothetical protein phrog_19268 unknown function unknown function 1 33536 33727
YP_009203249.1 NC_028851_p47 DNA recombinational protein RecT phrog_2780 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 27417 28337
YP_009203227.1 NC_028851_p25 hypothetical protein phrog_14009 unknown function unknown function -1 15826 15951
YP_009203256.1 NC_028851_p54 hypothetical protein phrog_19477 unknown function unknown function 1 32074 32280
YP_009203221.1 NC_028851_p19 hypothetical protein phrog_134 unknown function unknown function 1 13824 13985
YP_009203266.1 NC_028851_p64 ArpU-like transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 35270 35710
YP_009203267.1 NC_028851_p65 antitoxin HicB phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover -1 35850 36272
YP_009203222.1 NC_028851_p20 bacteriocin biosynthesis protein phrog_2429 involved in bacteriocin production or immunity moron, auxiliary metabolic gene and host takeover 1 13966 14205
YP_009203216.1 NC_028851_p14 tail tape-measure protein phrog_58 tail length tape measure protein tail 1 7795 10431
YP_009203263.1 NC_028851_p61 hypothetical protein phrog_6998 unknown function unknown function 1 33835 34047
YP_009203269.1 NC_028851_p67 transglycosylase phrog_1315 unknown function unknown function 1 37340 37606
YP_009203254.1 NC_028851_p52 hypothetical protein phrog_6868 unknown function unknown function 1 31549 31860
YP_009203238.1 NC_028851_p36 hypothetical protein phrog_13096 unknown function unknown function 1 22166 22312
YP_009203260.1 NC_028851_p58 hypothetical protein phrog_18759 unknown function unknown function 1 33220 33543
YP_009203206.1 NC_028851_p4 Clp protease phrog_94 head maturation protease head and packaging 1 3303 4025
YP_009203207.1 NC_028851_p5 major capsid protein phrog_10 major head protein head and packaging 1 4022 5152
YP_009203234.1 NC_028851_p32 integrase phrog_1 integrase integration and excision -1 19634 20779
YP_009203230.1 NC_028851_p28 YolD-like protein phrog_8703 unknown function unknown function 1 18473 18727
YP_009203240.1 NC_028851_p38 hypothetical protein phrog_13601 unknown function unknown function 1 23105 23488
YP_009203265.1 NC_028851_p63 hypothetical protein phrog_5494 unknown function unknown function 1 34761 35219
YP_009203241.1 NC_028851_p39 hypothetical protein phrog_10535 unknown function unknown function 1 23485 23715
YP_009203217.1 NC_028851_p15 tail protein phrog_33 distal tail protein Dit tail 1 10428 11279
YP_009203211.1 NC_028851_p9 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 5873 6301
YP_009203231.1 NC_028851_p29 hypothetical protein phrog_6785 unknown function unknown function 1 18840 19037
YP_009203244.1 NC_028851_p42 hypothetical protein phrog_14421 unknown function unknown function 1 24626 25180
YP_009203218.1 NC_028851_p16 endopeptidase tail protein phrog_538 minor tail protein tail 1 11282 12400
YP_009203210.1 NC_028851_p8 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 5556 5873
YP_009203226.1 NC_028851_p24 hypothetical protein singleton unknown function unknown function -1 15601 15753
YP_009203247.1 NC_028851_p45 AAA domain ATPase phrog_1499 unknown function unknown function 1 25697 27226
YP_009203253.1 NC_028851_p51 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 30224 31552
YP_009203258.1 NC_028851_p56 hypothetical protein phrog_33780 unknown function unknown function 1 32685 32900
YP_009203225.1 NC_028851_p23 hypothetical protein phrog_9393 unknown function unknown function 1 15240 15416
YP_009203205.1 NC_028851_p3 portal protein phrog_12 portal protein head and packaging 1 2066 3319
YP_009203262.1 NC_028851_p60 hypothetical protein singleton unknown function unknown function 1 33681 33845
YP_009203252.1 NC_028851_p50 primosome component-like protein phrog_2514 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 29434 30264
YP_009203229.1 NC_028851_p27 hypothetical protein phrog_3711 unknown function unknown function 1 18148 18369
YP_009203233.1 NC_028851_p31 hypothetical protein phrog_21019 unknown function unknown function -1 19404 19607
YP_009203212.1 NC_028851_p10 tail protein phrog_176 tail terminator connector 1 6285 6680
YP_009203208.1 NC_028851_p6 hypothetical protein phrog_6793 unknown function unknown function 1 5130 5303
YP_009203213.1 NC_028851_p11 major tail protein phrog_1407 major tail protein tail 1 6682 7119
YP_009203209.1 NC_028851_p7 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 5296 5559
YP_009203242.1 NC_028851_p40 hypothetical protein phrog_13275 unknown function unknown function 1 23699 23872
YP_009203255.1 NC_028851_p53 hypothetical protein phrog_25160 unknown function unknown function 1 31875 32024
YP_009203250.1 NC_028851_p48 metallo-hydrolase phrog_392 metal-dependent hydrolase other 1 28350 29108
YP_009203232.1 NC_028851_p30 hypothetical protein phrog_3502 unknown function unknown function 1 19027 19284
YP_009203251.1 NC_028851_p49 hypothetical protein phrog_7503 unknown function unknown function 1 29105 29419
YP_009203214.1 NC_028851_p12 hypothetical protein phrog_7902 unknown function unknown function 1 7116 7454
YP_009203220.1 NC_028851_p18 hypothetical protein phrog_6220 unknown function unknown function 1 13480 13827
YP_009203268.1 NC_028851_p66 toxin HicA phrog_353 toxin moron, auxiliary metabolic gene and host takeover -1 36334 36549
YP_009203219.1 NC_028851_p17 tail protein phrog_5339 virion structural protein head and packaging 1 12397 13479
YP_009203228.1 NC_028851_p26 toxin-like protein phrog_18811 toxin moron, auxiliary metabolic gene and host takeover 1 16105 18135
YP_009203237.1 NC_028851_p35 helix-turn-helix domain transcriptional regulator phrog_66 excisionase and transcriptional regulator integration and excision 1 21886 22098
YP_009203223.1 NC_028851_p21 N-acetylmuramoyl-L-alanine amidase phrog_3088 amidase lysis 1 14202 14873
YP_009203243.1 NC_028851_p41 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 23877 24629
YP_009203264.1 NC_028851_p62 RuvC-like resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 34044 34601
YP_009203245.1 NC_028851_p43 hypothetical protein phrog_8406 unknown function unknown function 1 25155 25418
YP_009203203.1 NC_028851_p1 terminase small subunit phrog_361 terminase small subunit head and packaging 1 50 364
YP_009203246.1 NC_028851_p44 hypothetical protein phrog_8288 unknown function unknown function 1 25423 25713
YP_009203235.1 NC_028851_p33 helix-turn-helix domain XRE family transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 20842 21513
YP_009203204.1 NC_028851_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 345 2069
YP_009203257.1 NC_028851_p55 yopX family protein phrog_98 unknown function unknown function 1 32306 32692
YP_009203239.1 NC_028851_p37 DNA binding antirepressor phrog_373 anti-repressor transcription regulation 1 22338 23075