Genomic map of Mycobacterium phage Equemioh13 (NC_028852)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028852
Definition
Mycobacterium phage Equemioh13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53042
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
96
%GC
63.5
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009203283.1 NC_028852_p13 terminase phrog_9 terminase large subunit head and packaging 1 7926 9713
YP_009203347.1 NC_028852_p77 hypothetical protein phrog_4569 unknown function unknown function -1 45973 46230
YP_009203288.1 NC_028852_p18 hypothetical protein phrog_748 head-tail connector protein connector 1 13681 13860
YP_009203294.1 NC_028852_p24 major tail subunit phrog_117 major tail protein tail 1 15592 16182
YP_009203289.1 NC_028852_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13864 14241
YP_009203307.1 NC_028852_p37 hypothetical protein phrog_4193 unknown function unknown function -1 28178 28312
YP_009203315.1 NC_028852_p45 hypothetical protein phrog_4326 unknown function unknown function -1 31609 31803
YP_009203333.1 NC_028852_p63 esterase/lipase phrog_789 esterase/lipase other -1 39917 40762
YP_009203331.1 NC_028852_p61 endo VII protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39365 39838
YP_009203308.1 NC_028852_p38 Xis phrog_66 excisionase and transcriptional regulator integration and excision -1 28316 28486
YP_009203319.1 NC_028852_p49 ThyX-like protein phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32633 33361
YP_009203323.1 NC_028852_p53 hypothetical protein phrog_499 unknown function unknown function -1 36192 36374
YP_009203339.1 NC_028852_p69 hypothetical protein phrog_520 unknown function unknown function -1 42676 42915
YP_009203344.1 NC_028852_p74 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44696 45271
YP_009203299.1 NC_028852_p29 minor tail subunit phrog_110 minor tail protein tail 1 20656 22428
YP_009203274.1 NC_028852_p4 hypothetical protein phrog_3585 immunity protein other 1 2313 2627
YP_009203357.1 NC_028852_p87 hypothetical protein phrog_586 unknown function unknown function -1 48911 49264
YP_009203356.1 NC_028852_p86 hypothetical protein phrog_2223 unknown function unknown function -1 48618 48914
YP_009203366.1 NC_028852_p96 hypothetical protein phrog_1676 unknown function unknown function -1 51563 51856
YP_009203359.1 NC_028852_p89 hypothetical protein phrog_10286 unknown function unknown function -1 49374 49724
YP_009203279.1 NC_028852_p9 hypothetical protein phrog_1087 unknown function unknown function 1 5033 5191
YP_009203340.1 NC_028852_p70 hypothetical protein phrog_666 unknown function unknown function -1 42944 43138
YP_009203358.1 NC_028852_p88 hypothetical protein phrog_12399 unknown function unknown function -1 49261 49377
YP_009203312.1 NC_028852_p42 hypothetical protein phrog_3283 unknown function unknown function -1 29335 29562
YP_009203326.1 NC_028852_p56 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 37205 37975
YP_009203346.1 NC_028852_p76 hypothetical protein phrog_4294 unknown function unknown function -1 45812 45973
YP_009203300.1 NC_028852_p30 hypothetical protein phrog_352 minor tail protein tail 1 22445 22891
YP_009203337.1 NC_028852_p67 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41738 42544
YP_009203365.1 NC_028852_p95 hypothetical protein phrog_1445 unknown function unknown function -1 51450 51572
YP_009203341.1 NC_028852_p71 hypothetical protein phrog_642 unknown function unknown function -1 43135 43362
YP_009203321.1 NC_028852_p51 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 33956 35992
YP_009203281.1 NC_028852_p11 holin phrog_526 holin lysis 1 6492 6929
YP_009203361.1 NC_028852_p91 hypothetical protein phrog_1946 unknown function unknown function -1 49885 50091
YP_009203353.1 NC_028852_p83 hypothetical protein phrog_421 unknown function unknown function -1 47449 48207
YP_009203352.1 NC_028852_p82 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47141 47452
YP_009203325.1 NC_028852_p55 hypothetical protein phrog_2436 unknown function unknown function -1 37050 37202
YP_009203335.1 NC_028852_p65 hypothetical protein phrog_9069 unknown function unknown function -1 41118 41423
YP_009203330.1 NC_028852_p60 hypothetical protein phrog_1370 unknown function unknown function -1 39208 39339
YP_009203311.1 NC_028852_p41 hypothetical protein phrog_12687 unknown function unknown function -1 29147 29338
YP_009203355.1 NC_028852_p85 hypothetical protein phrog_828 unknown function unknown function -1 48347 48553
YP_009203363.1 NC_028852_p93 hypothetical protein phrog_3207 unknown function unknown function -1 50431 50718
YP_009203348.1 NC_028852_p78 hypothetical protein phrog_1178 unknown function unknown function -1 46230 46550
YP_009203303.1 NC_028852_p33 hypothetical protein phrog_19086 unknown function unknown function 1 25474 25686
YP_009203327.1 NC_028852_p57 hypothetical protein phrog_474 phosphofructokinase other -1 37972 38292
YP_009203287.1 NC_028852_p17 major capsid protein phrog_10 major head protein head and packaging 1 12655 13611
YP_009203328.1 NC_028852_p58 hypothetical protein phrog_2264 unknown function unknown function -1 38289 38366
YP_009203301.1 NC_028852_p31 hypothetical protein phrog_404 minor tail protein tail 1 22888 23217
YP_009203306.1 NC_028852_p36 hypothetical protein phrog_549 unknown function unknown function 1 27705 28100
YP_009203354.1 NC_028852_p84 hypothetical protein phrog_855 unknown function unknown function -1 48207 48350
YP_009203298.1 NC_028852_p28 minor tail subunit phrog_106 minor tail protein tail 1 19643 20659
YP_009203290.1 NC_028852_p20 hypothetical protein phrog_830 head-tail connector protein connector 1 14238 14432
YP_009203296.1 NC_028852_p26 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16296 16700
YP_009203332.1 NC_028852_p62 hypothetical protein phrog_2187 unknown function unknown function -1 39804 39920
YP_009203329.1 NC_028852_p59 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38366 38998
YP_009203318.1 NC_028852_p48 hypothetical protein phrog_690 unknown function unknown function -1 32419 32631
YP_009203284.1 NC_028852_p14 portal protein phrog_104 portal protein head and packaging 1 9710 11170
YP_009203314.1 NC_028852_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29814 31601
YP_009203276.1 NC_028852_p6 hypothetical protein phrog_226 minor tail protein tail 1 2959 3429
YP_009203313.1 NC_028852_p43 hypothetical protein phrog_896 unknown function unknown function -1 29562 29765
YP_009203320.1 NC_028852_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33435 33944
YP_009203317.1 NC_028852_p47 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31988 32422
YP_009203316.1 NC_028852_p46 hypothetical protein phrog_3812 unknown function unknown function -1 31803 31988
YP_009203291.1 NC_028852_p21 hypothetical protein phrog_320 head closure Hc1 connector 1 14432 14800
YP_009203336.1 NC_028852_p66 hypothetical protein phrog_5101 unknown function unknown function -1 41417 41704
YP_009203324.1 NC_028852_p54 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36358 37053
YP_009203277.1 NC_028852_p7 minor tail protein phrog_1260 minor tail protein tail 1 3515 4480
YP_009203334.1 NC_028852_p64 hypothetical protein phrog_397 unknown function unknown function -1 40750 40980
YP_009203273.1 NC_028852_p3 hypothetical protein phrog_5234 unknown function unknown function 1 1312 2313
YP_009203293.1 NC_028852_p23 hypothetical protein phrog_123 tail terminator connector 1 15145 15573
YP_009203322.1 NC_028852_p52 hypothetical protein phrog_2046 unknown function unknown function -1 35992 36195
YP_009203360.1 NC_028852_p90 hypothetical protein phrog_519 unknown function unknown function -1 49721 49888
YP_009203342.1 NC_028852_p72 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43410 44225
YP_009203310.1 NC_028852_p40 hypothetical protein phrog_2099 unknown function unknown function -1 28887 29147
YP_009203278.1 NC_028852_p8 hypothetical protein singleton unknown function unknown function 1 4589 4888
YP_009203304.1 NC_028852_p34 integrase phrog_1 integrase integration and excision -1 25678 26811
YP_009203272.1 NC_028852_p2 VIP2 protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 642 1376
YP_009203351.1 NC_028852_p81 hypothetical protein phrog_1477 unknown function unknown function -1 47010 47141
YP_009203275.1 NC_028852_p5 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2624 2920
YP_009203309.1 NC_028852_p39 hypothetical protein phrog_383 unknown function unknown function -1 28486 28890
YP_009203349.1 NC_028852_p79 hypothetical protein phrog_1875 unknown function unknown function -1 46547 46786
YP_009203282.1 NC_028852_p12 lysin B phrog_102 endolysin lysis 1 6926 7903
YP_009203271.1 NC_028852_p1 hypothetical protein phrog_15760 unknown function unknown function 1 330 446
YP_009203285.1 NC_028852_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11200 12051
YP_009203292.1 NC_028852_p22 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14800 15135
YP_009203305.1 NC_028852_p35 hypothetical protein phrog_733 excisionase integration and excision 1 27224 27658
YP_009203338.1 NC_028852_p68 hypothetical protein phrog_2731 unknown function unknown function -1 42554 42679
YP_009203286.1 NC_028852_p16 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12101 12625
YP_009203350.1 NC_028852_p80 hypothetical protein phrog_3351 unknown function unknown function -1 46783 47010
YP_009203295.1 NC_028852_p25 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16296 17125
YP_009203364.1 NC_028852_p94 hypothetical protein phrog_2554 unknown function unknown function -1 50734 51450
YP_009203302.1 NC_028852_p32 minor tail subunit phrog_737 minor tail protein tail 1 23218 25425
YP_009203343.1 NC_028852_p73 hypothetical protein phrog_1562 unknown function unknown function -1 44222 44641
YP_009203297.1 NC_028852_p27 tape measure protein phrog_305 tail length tape measure protein tail 1 17115 19622
YP_009203345.1 NC_028852_p75 hypothetical protein phrog_1173 unknown function unknown function -1 45511 45675
YP_009203362.1 NC_028852_p92 hypothetical protein phrog_11479 unknown function unknown function -1 50100 50429
YP_009203280.1 NC_028852_p10 lysin A phrog_317 endolysin lysis 1 5191 6495