| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028853 |
Definition |
Mannheimia phage vB_MhS_535AP2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
50078 |
Host Name |
Mannheimia haemolytica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
41.3 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009203442.1 | NC_028853_p76 | lytic protein Rz | phrog_214 | Rz-like spanin | lysis | 1 | 49159 | 49509 |
| YP_009203373.1 | NC_028853_p7 | hypothetical protein | phrog_771 | virion structural protein | head and packaging | 1 | 5793 | 6782 |
| YP_009203392.1 | NC_028853_p26 | tail assembly protein I | phrog_32 | tail assembly protein | tail | 1 | 16894 | 17523 |
| YP_009203421.1 | NC_028853_p55 | hypothetical protein | phrog_4293 | unknown function | unknown function | -1 | 40299 | 40679 |
| YP_009203445.1 | NC_028853_p79 | hypothetical protein | phrog_8452 | unknown function | unknown function | 1 | 49909 | 50064 |
| YP_009203430.1 | NC_028853_p64 | hypothetical protein | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 45366 | 45872 |
| YP_009203394.1 | NC_028853_p28 | hypothetical protein | phrog_24617 | unknown function | unknown function | 1 | 24255 | 24701 |
| YP_009203387.1 | NC_028853_p21 | minor tail protein M | phrog_14 | minor tail protein | tail | 1 | 14367 | 14696 |
| YP_009203431.1 | NC_028853_p65 | hypothetical protein | phrog_11301 | unknown function | unknown function | 1 | 45932 | 46135 |
| YP_009203426.1 | NC_028853_p60 | replication protein O | phrog_5810 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 42355 | 43185 |
| YP_009203415.1 | NC_028853_p49 | hypothetical protein | phrog_20537 | unknown function | unknown function | -1 | 36792 | 37028 |
| YP_009203401.1 | NC_028853_p35 | integrase | phrog_1 | integrase | integration and excision | 1 | 27926 | 28915 |
| YP_009203427.1 | NC_028853_p61 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 43182 | 44543 |
| YP_009203420.1 | NC_028853_p54 | hypothetical protein | phrog_12015 | unknown function | unknown function | -1 | 39809 | 40294 |
| YP_009203425.1 | NC_028853_p59 | hypothetical protein | phrog_12173 | unknown function | unknown function | 1 | 42170 | 42340 |
| YP_009203385.1 | NC_028853_p19 | hypothetical protein | phrog_13701 | unknown function | unknown function | 1 | 11391 | 11735 |
| YP_009203396.1 | NC_028853_p30 | hypothetical protein | phrog_14212 | unknown function | unknown function | 1 | 25416 | 25709 |
| YP_009203414.1 | NC_028853_p48 | hypothetical protein | phrog_18123 | unknown function | unknown function | -1 | 35717 | 36223 |
| YP_009203405.1 | NC_028853_p39 | hypothetical protein | phrog_14017 | unknown function | unknown function | -1 | 30635 | 30838 |
| YP_009203437.1 | NC_028853_p71 | hypothetical protein | phrog_11765 | unknown function | unknown function | 1 | 47855 | 48040 |
| YP_009203407.1 | NC_028853_p41 | pyruvate kinase | phrog_9552 | kinase | other | -1 | 31440 | 31892 |
| YP_009203432.1 | NC_028853_p66 | hypothetical protein | phrog_12445 | unknown function | unknown function | 1 | 46181 | 46375 |
| YP_009203372.1 | NC_028853_p6 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 5344 | 5778 |
| YP_009203383.1 | NC_028853_p17 | hypothetical protein | phrog_7561 | unknown function | unknown function | -1 | 10463 | 10732 |
| YP_009203384.1 | NC_028853_p18 | hypothetical protein | phrog_13311 | unknown function | unknown function | 1 | 10865 | 11323 |
| YP_009203403.1 | NC_028853_p37 | methyltransferase | phrog_954 | DNA methyltransferase | other | -1 | 29196 | 29687 |
| YP_009203443.1 | NC_028853_p77 | lytic protein Rz1 | phrog_456 | Rz-like spanin | lysis | 1 | 49514 | 49687 |
| YP_009203377.1 | NC_028853_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7762 | 8130 |
| YP_009203393.1 | NC_028853_p27 | host specificity protein J | phrog_31 | central tail fiber J | tail | 1 | 17533 | 24258 |
| YP_009203413.1 | NC_028853_p47 | hypothetical protein | phrog_18413 | unknown function | unknown function | -1 | 35354 | 35713 |
| YP_009203386.1 | NC_028853_p20 | tail length tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 11868 | 14363 |
| YP_009203374.1 | NC_028853_p8 | hypothetical protein | phrog_13988 | unknown function | unknown function | 1 | 6794 | 7036 |
| YP_009203369.1 | NC_028853_p3 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 1726 | 3102 |
| YP_009203400.1 | NC_028853_p34 | hypothetical protein | phrog_16984 | unknown function | unknown function | -1 | 26844 | 27434 |
| YP_009203409.1 | NC_028853_p43 | recombinase | phrog_10056 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 32734 | 33528 |
| YP_009203402.1 | NC_028853_p36 | hypothetical protein | phrog_4996 | unknown function | unknown function | -1 | 28912 | 29169 |
| YP_009203376.1 | NC_028853_p10 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 7416 | 7760 |
| YP_009203434.1 | NC_028853_p68 | NinG protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46503 | 47072 |
| YP_009203399.1 | NC_028853_p33 | hypothetical protein | phrog_12690 | unknown function | unknown function | -1 | 26256 | 26774 |
| YP_009203382.1 | NC_028853_p16 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 9783 | 10448 |
| YP_009203411.1 | NC_028853_p45 | hypothetical protein | phrog_17268 | unknown function | unknown function | -1 | 34532 | 34744 |
| YP_009203406.1 | NC_028853_p40 | hypothetical protein | phrog_7704 | unknown function | unknown function | -1 | 30835 | 31362 |
| YP_009203433.1 | NC_028853_p67 | hypothetical protein | phrog_12212 | unknown function | unknown function | 1 | 46388 | 46510 |
| YP_009203438.1 | NC_028853_p72 | hypothetical protein | phrog_19968 | unknown function | unknown function | 1 | 48066 | 48236 |
| YP_009203435.1 | NC_028853_p69 | antitermination protein Q | phrog_943 | anti-termination protein Q-like | transcription regulation | 1 | 47062 | 47535 |
| YP_009203380.1 | NC_028853_p14 | toxin-antitoxin system antitoxin component HicB | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 9033 | 9449 |
| YP_009203381.1 | NC_028853_p15 | toxin-antitoxin system antitoxin component HicA | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 9505 | 9681 |
| YP_009203371.1 | NC_028853_p5 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 3981 | 5351 |
| YP_009203370.1 | NC_028853_p4 | head morphogenesis protein | phrog_758 | head morphogenesis | head and packaging | 1 | 3056 | 3994 |
| YP_009203441.1 | NC_028853_p75 | endolysin | phrog_7 | endolysin | lysis | 1 | 48617 | 49186 |
| YP_009203389.1 | NC_028853_p23 | minor tail protein L | phrog_18 | minor tail protein | tail | 1 | 15174 | 15890 |
| YP_009203416.1 | NC_028853_p50 | hypothetical protein | phrog_12192 | unknown function | unknown function | -1 | 37410 | 37640 |
| YP_009203397.1 | NC_028853_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25718 | 25882 |
| YP_009203378.1 | NC_028853_p12 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 8127 | 8507 |
| YP_009203367.1 | NC_028853_p1 | terminase, small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 1 | 525 |
| YP_009203412.1 | NC_028853_p46 | hypothetical protein | phrog_13811 | unknown function | unknown function | -1 | 34878 | 35357 |
| YP_009203428.1 | NC_028853_p62 | methyltransferase | phrog_359 | DNA methyltransferase | other | 1 | 44540 | 45076 |
| YP_009203408.1 | NC_028853_p42 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32102 | 32737 |
| YP_009203388.1 | NC_028853_p22 | minor tail protein L | phrog_2959 | minor tail protein | tail | 1 | 14696 | 15166 |
| YP_009203436.1 | NC_028853_p70 | hypothetical protein | phrog_25131 | unknown function | unknown function | 1 | 47733 | 47849 |
| YP_009203440.1 | NC_028853_p74 | holin | phrog_20 | holin | lysis | 1 | 48379 | 48624 |
| YP_009203423.1 | NC_028853_p57 | Cro repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 41453 | 41725 |
| YP_009203398.1 | NC_028853_p32 | hypothetical protein | phrog_18203 | unknown function | unknown function | 1 | 25882 | 26109 |
| YP_009203379.1 | NC_028853_p13 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 8511 | 8993 |
| YP_009203391.1 | NC_028853_p25 | hypothetical protein | phrog_13775 | unknown function | unknown function | 1 | 16766 | 16891 |
| YP_009203439.1 | NC_028853_p73 | hypothetical protein | phrog_38551 | unknown function | unknown function | 1 | 48237 | 48431 |
| YP_009203368.1 | NC_028853_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 509 | 1729 |
| YP_009203419.1 | NC_028853_p53 | transposase | phrog_157 | transposase | integration and excision | -1 | 38659 | 39699 |
| YP_009203422.1 | NC_028853_p56 | CI repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 40730 | 41389 |
| YP_009203410.1 | NC_028853_p44 | hypothetical protein | phrog_16197 | unknown function | unknown function | -1 | 33569 | 34519 |
| YP_009203375.1 | NC_028853_p9 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 7039 | 7416 |
| YP_009203444.1 | NC_028853_p78 | hypothetical protein | phrog_26315 | unknown function | unknown function | -1 | 49700 | 49885 |
| YP_009203395.1 | NC_028853_p29 | hypothetical protein | phrog_24735 | unknown function | unknown function | 1 | 24702 | 25301 |
| YP_009203417.1 | NC_028853_p51 | plasmid maintenance system killer HigB | phrog_3066 | toxin of TA system | moron, auxiliary metabolic gene and host takeover | 1 | 37932 | 38207 |
| YP_009203424.1 | NC_028853_p58 | CII protein | phrog_725 | CII-like regulator | transcription regulation | 1 | 41746 | 42006 |
| YP_009203404.1 | NC_028853_p38 | hypothetical protein | phrog_1992 | MazG-like pyrophosphatase | other | -1 | 30187 | 30651 |
| YP_009203429.1 | NC_028853_p63 | hypothetical protein | phrog_8506 | unknown function | unknown function | 1 | 45167 | 45382 |
| YP_009203390.1 | NC_028853_p24 | minor tail protein K | phrog_30 | minor tail protein | tail | 1 | 15894 | 16625 |
| YP_009203418.1 | NC_028853_p52 | plasmid maintenance system killer HigA | phrog_1381 | plasmid antitoxin with HTH domain | moron, auxiliary metabolic gene and host takeover | 1 | 38216 | 38521 |