Genomic map of Staphylococcus phage B166 (NC_028859)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028859
Definition
Staphylococcus phage B166, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
42881
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
64
%GC
34.82
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009204086.1 NC_028859_p59 CHAP-domain tail tip cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other 1 36297 38171
YP_009204034.1 NC_028859_p7 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 3473 4261
YP_009204058.1 NC_028859_p31 hypothetical protein phrog_266 unknown function unknown function 1 14414 14662
YP_009204053.1 NC_028859_p26 hypothetical protein phrog_467 unknown function unknown function 1 12677 13081
YP_009204047.1 NC_028859_p20 replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 10296 11189
YP_009204028.1 NC_028859_p1 integrase phrog_1 integrase integration and excision -1 53 1102
YP_009204043.1 NC_028859_p16 ATPase phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 6220 8175
YP_009204031.1 NC_028859_p4 hypothetical protein singleton unknown function unknown function -1 2188 2328
YP_009204052.1 NC_028859_p25 hypothetical protein phrog_1241 unknown function unknown function 1 12468 12674
YP_009204073.1 NC_028859_p46 tail-component phrog_5 tail completion or Neck1 protein connector 1 23488 23895
YP_009204077.1 NC_028859_p50 hypothetical protein phrog_1404 tail protein tail 1 25467 25790
YP_009204049.1 NC_028859_p22 RusA-like crossover junction endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11411 11827
YP_009204032.1 NC_028859_p5 cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 2374 3012
YP_009204074.1 NC_028859_p47 hypothetical protein phrog_176 tail terminator connector 1 23908 24333
YP_009204055.1 NC_028859_p28 hypothetical protein phrog_98 unknown function unknown function 1 13269 13721
YP_009204059.1 NC_028859_p32 dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14637 15191
YP_009204051.1 NC_028859_p24 hypothetical protein phrog_258 virulence associated other 1 12212 12454
YP_009204046.1 NC_028859_p19 ssDNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 9796 10266
YP_009204033.1 NC_028859_p6 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 3203 3457
YP_009204075.1 NC_028859_p48 tail protein phrog_238 major tail protein tail 1 24334 24891
YP_009204030.1 NC_028859_p3 hypothetical protein phrog_24881 unknown function unknown function -1 1635 2156
YP_009204084.1 NC_028859_p57 XkdX superfamily protein phrog_134 unknown function unknown function 1 35644 35820
YP_009204038.1 NC_028859_p11 hypothetical protein phrog_989 unknown function unknown function 1 4916 5137
YP_009204067.1 NC_028859_p40 head morphogenesis domain protein phrog_115 minor head protein head and packaging 1 20082 21032
YP_009204090.1 NC_028859_p63 amidase phrog_489 endolysin lysis 1 40132 41553
YP_009204062.1 NC_028859_p35 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 16055 16228
YP_009204060.1 NC_028859_p33 hypothetical protein phrog_2027 unknown function unknown function 1 15227 15472
YP_009204035.1 NC_028859_p8 hypothetical protein singleton unknown function unknown function 1 4277 4480
YP_009204082.1 NC_028859_p55 hypothetical protein phrog_257 minor tail protein tail 1 33443 35266
YP_009204079.1 NC_028859_p52 Siphovirus-type tail component phrog_33 distal tail protein Dit tail 1 28694 29635
YP_009204071.1 NC_028859_p44 head-tail connector protein phrog_1161 head-tail adaptor connector 1 22804 23154
YP_009204064.1 NC_028859_p37 terminase small subunit phrog_1595 terminase small subunit head and packaging 1 16982 17476
YP_009204054.1 NC_028859_p27 hypothetical protein phrog_2532 unknown function unknown function 1 13078 13272
YP_009204085.1 NC_028859_p58 hypothetical protein phrog_276 unknown function unknown function 1 35861 36160
YP_009204061.1 NC_028859_p34 hypothetical protein phrog_301 secreted protein other 1 15663 16058
YP_009204045.1 NC_028859_p18 metallo-hydrolase/oxidoreductase superfamily protein phrog_392 metal-dependent hydrolase other 1 9310 9795
YP_009204041.1 NC_028859_p14 hypothetical protein phrog_401 unknown function unknown function 1 5691 5948
YP_009204037.1 NC_028859_p10 hypothetical protein phrog_4309 unknown function unknown function 1 4667 4867
YP_009204040.1 NC_028859_p13 hypothetical protein phrog_983 unknown function unknown function 1 5384 5686
YP_009204080.1 NC_028859_p53 tail endopeptidase phrog_663 minor head protein head and packaging 1 29646 31532
YP_009204057.1 NC_028859_p30 hypothetical protein phrog_1034 unknown function unknown function 1 14224 14421
YP_009204078.1 NC_028859_p51 tape measure protein phrog_58 tail length tape measure protein tail 1 25794 28679
YP_009204089.1 NC_028859_p62 holin phrog_263 holin lysis 1 39879 40154
YP_009204039.1 NC_028859_p12 hypothetical protein phrog_369 unknown function unknown function 1 5130 5291
YP_009204066.1 NC_028859_p39 portal protein phrog_64 portal protein head and packaging 1 18689 20113
YP_009204036.1 NC_028859_p9 hypothetical protein phrog_5079 unknown function unknown function -1 4477 4617
YP_009204063.1 NC_028859_p36 hypothetical protein phrog_1058 unknown function unknown function 1 16229 16630
YP_009204070.1 NC_028859_p43 hypothetical protein phrog_2406 unknown function unknown function 1 22652 22798
YP_009204076.1 NC_028859_p49 hypothetical protein phrog_183 tail chaperone protein tail 1 24955 25461
YP_009204069.1 NC_028859_p42 major capsid protein phrog_10 major head protein head and packaging 1 21729 22643
YP_009204065.1 NC_028859_p38 terminase large subunit phrog_2 terminase large subunit head and packaging 1 17469 18692
YP_009204083.1 NC_028859_p56 hypothetical protein phrog_300 tail fiber protein tail 1 35266 35643
YP_009204068.1 NC_028859_p41 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 21128 21712
YP_009204081.1 NC_028859_p54 minor structural protein phrog_287 minor tail protein tail 1 31545 33443
YP_009204091.1 NC_028859_p64 exfoliative toxin A phrog_13651 unknown function unknown function 1 41679 42521
YP_009204056.1 NC_028859_p29 hypothetical protein phrog_8205 unknown function unknown function 1 13718 14221
YP_009204044.1 NC_028859_p17 DNA single-strand annealing protein RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8177 9097
YP_009204072.1 NC_028859_p45 head-tail adaptor phrog_25 head closure Hc1 connector 1 23166 23501
YP_009204048.1 NC_028859_p21 hypothetical protein phrog_433 unknown function unknown function 1 11196 11414
YP_009204087.1 NC_028859_p60 tail fiber protein phrog_1125 tail fiber protein tail 1 38184 39422
YP_009204050.1 NC_028859_p23 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11831 12208
YP_009204042.1 NC_028859_p15 hypothetical protein phrog_2527 unknown function unknown function 1 5945 6223
YP_009204029.1 NC_028859_p2 hypothetical protein phrog_21734 unknown function unknown function -1 1172 1642
YP_009204088.1 NC_028859_p61 hypothetical protein phrog_1262 unknown function unknown function 1 39428 39823