| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028859 |
Definition |
Staphylococcus phage B166, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
42881 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
64 |
%GC |
34.82 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009204086.1 | NC_028859_p59 | CHAP-domain tail tip cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36297 | 38171 |
| YP_009204034.1 | NC_028859_p7 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 3473 | 4261 |
| YP_009204058.1 | NC_028859_p31 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14414 | 14662 |
| YP_009204053.1 | NC_028859_p26 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 12677 | 13081 |
| YP_009204047.1 | NC_028859_p20 | replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10296 | 11189 |
| YP_009204028.1 | NC_028859_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 53 | 1102 |
| YP_009204043.1 | NC_028859_p16 | ATPase | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6220 | 8175 |
| YP_009204031.1 | NC_028859_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2188 | 2328 |
| YP_009204052.1 | NC_028859_p25 | hypothetical protein | phrog_1241 | unknown function | unknown function | 1 | 12468 | 12674 |
| YP_009204073.1 | NC_028859_p46 | tail-component | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23488 | 23895 |
| YP_009204077.1 | NC_028859_p50 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 25467 | 25790 |
| YP_009204049.1 | NC_028859_p22 | RusA-like crossover junction endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11411 | 11827 |
| YP_009204032.1 | NC_028859_p5 | cI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2374 | 3012 |
| YP_009204074.1 | NC_028859_p47 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 23908 | 24333 |
| YP_009204055.1 | NC_028859_p28 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13269 | 13721 |
| YP_009204059.1 | NC_028859_p32 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14637 | 15191 |
| YP_009204051.1 | NC_028859_p24 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12212 | 12454 |
| YP_009204046.1 | NC_028859_p19 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9796 | 10266 |
| YP_009204033.1 | NC_028859_p6 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3203 | 3457 |
| YP_009204075.1 | NC_028859_p48 | tail protein | phrog_238 | major tail protein | tail | 1 | 24334 | 24891 |
| YP_009204030.1 | NC_028859_p3 | hypothetical protein | phrog_24881 | unknown function | unknown function | -1 | 1635 | 2156 |
| YP_009204084.1 | NC_028859_p57 | XkdX superfamily protein | phrog_134 | unknown function | unknown function | 1 | 35644 | 35820 |
| YP_009204038.1 | NC_028859_p11 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 4916 | 5137 |
| YP_009204067.1 | NC_028859_p40 | head morphogenesis domain protein | phrog_115 | minor head protein | head and packaging | 1 | 20082 | 21032 |
| YP_009204090.1 | NC_028859_p63 | amidase | phrog_489 | endolysin | lysis | 1 | 40132 | 41553 |
| YP_009204062.1 | NC_028859_p35 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16055 | 16228 |
| YP_009204060.1 | NC_028859_p33 | hypothetical protein | phrog_2027 | unknown function | unknown function | 1 | 15227 | 15472 |
| YP_009204035.1 | NC_028859_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4277 | 4480 |
| YP_009204082.1 | NC_028859_p55 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 33443 | 35266 |
| YP_009204079.1 | NC_028859_p52 | Siphovirus-type tail component | phrog_33 | distal tail protein Dit | tail | 1 | 28694 | 29635 |
| YP_009204071.1 | NC_028859_p44 | head-tail connector protein | phrog_1161 | head-tail adaptor | connector | 1 | 22804 | 23154 |
| YP_009204064.1 | NC_028859_p37 | terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 16982 | 17476 |
| YP_009204054.1 | NC_028859_p27 | hypothetical protein | phrog_2532 | unknown function | unknown function | 1 | 13078 | 13272 |
| YP_009204085.1 | NC_028859_p58 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 35861 | 36160 |
| YP_009204061.1 | NC_028859_p34 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 15663 | 16058 |
| YP_009204045.1 | NC_028859_p18 | metallo-hydrolase/oxidoreductase superfamily protein | phrog_392 | metal-dependent hydrolase | other | 1 | 9310 | 9795 |
| YP_009204041.1 | NC_028859_p14 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 5691 | 5948 |
| YP_009204037.1 | NC_028859_p10 | hypothetical protein | phrog_4309 | unknown function | unknown function | 1 | 4667 | 4867 |
| YP_009204040.1 | NC_028859_p13 | hypothetical protein | phrog_983 | unknown function | unknown function | 1 | 5384 | 5686 |
| YP_009204080.1 | NC_028859_p53 | tail endopeptidase | phrog_663 | minor head protein | head and packaging | 1 | 29646 | 31532 |
| YP_009204057.1 | NC_028859_p30 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 14224 | 14421 |
| YP_009204078.1 | NC_028859_p51 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 25794 | 28679 |
| YP_009204089.1 | NC_028859_p62 | holin | phrog_263 | holin | lysis | 1 | 39879 | 40154 |
| YP_009204039.1 | NC_028859_p12 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 5130 | 5291 |
| YP_009204066.1 | NC_028859_p39 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 18689 | 20113 |
| YP_009204036.1 | NC_028859_p9 | hypothetical protein | phrog_5079 | unknown function | unknown function | -1 | 4477 | 4617 |
| YP_009204063.1 | NC_028859_p36 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 16229 | 16630 |
| YP_009204070.1 | NC_028859_p43 | hypothetical protein | phrog_2406 | unknown function | unknown function | 1 | 22652 | 22798 |
| YP_009204076.1 | NC_028859_p49 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 24955 | 25461 |
| YP_009204069.1 | NC_028859_p42 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 21729 | 22643 |
| YP_009204065.1 | NC_028859_p38 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 17469 | 18692 |
| YP_009204083.1 | NC_028859_p56 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 35266 | 35643 |
| YP_009204068.1 | NC_028859_p41 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 21128 | 21712 |
| YP_009204081.1 | NC_028859_p54 | minor structural protein | phrog_287 | minor tail protein | tail | 1 | 31545 | 33443 |
| YP_009204091.1 | NC_028859_p64 | exfoliative toxin A | phrog_13651 | unknown function | unknown function | 1 | 41679 | 42521 |
| YP_009204056.1 | NC_028859_p29 | hypothetical protein | phrog_8205 | unknown function | unknown function | 1 | 13718 | 14221 |
| YP_009204044.1 | NC_028859_p17 | DNA single-strand annealing protein RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8177 | 9097 |
| YP_009204072.1 | NC_028859_p45 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 23166 | 23501 |
| YP_009204048.1 | NC_028859_p21 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11196 | 11414 |
| YP_009204087.1 | NC_028859_p60 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 38184 | 39422 |
| YP_009204050.1 | NC_028859_p23 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 11831 | 12208 |
| YP_009204042.1 | NC_028859_p15 | hypothetical protein | phrog_2527 | unknown function | unknown function | 1 | 5945 | 6223 |
| YP_009204029.1 | NC_028859_p2 | hypothetical protein | phrog_21734 | unknown function | unknown function | -1 | 1172 | 1642 |
| YP_009204088.1 | NC_028859_p61 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 39428 | 39823 |