| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028861 |
Definition |
Mycobacterium phage FlagStaff, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
44576 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
68.52 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009204219.1 | NC_028861_p28 | holin | phrog_7198 | holin | lysis | 1 | 27909 | 28259 |
| YP_009204234.1 | NC_028861_p43 | RecT | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34088 | 35491 |
| YP_009204205.1 | NC_028861_p14 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10592 | 11628 |
| YP_009204206.1 | NC_028861_p15 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10592 | 11215 |
| YP_009204218.1 | NC_028861_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 26635 | 27852 |
| YP_009204222.1 | NC_028861_p31 | hypothetical protein | phrog_7506 | recombination directionality factor | integration and excision | 1 | 29350 | 29589 |
| YP_009204207.1 | NC_028861_p16 | tapemeasure protein | phrog_971 | endolysin | lysis | 1 | 11630 | 15664 |
| YP_009204255.1 | NC_028861_p64 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43887 | 44213 |
| YP_009204224.1 | NC_028861_p33 | hypothetical protein | phrog_17562 | unknown function | unknown function | 1 | 30079 | 30789 |
| YP_009204244.1 | NC_028861_p53 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 39294 | 39698 |
| YP_009204247.1 | NC_028861_p56 | hypothetical protein | phrog_30654 | unknown function | unknown function | 1 | 40069 | 40497 |
| YP_009204227.1 | NC_028861_p36 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 31381 | 31731 |
| YP_009204208.1 | NC_028861_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15628 | 16848 |
| YP_009204198.1 | NC_028861_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7210 | 8112 |
| YP_009204249.1 | NC_028861_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40765 | 40902 |
| YP_009204246.1 | NC_028861_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39807 | 40016 |
| YP_009204228.1 | NC_028861_p37 | hypothetical protein | phrog_16899 | unknown function | unknown function | 1 | 31731 | 31955 |
| YP_009204232.1 | NC_028861_p41 | hypothetical protein | phrog_2693 | unknown function | unknown function | 1 | 32551 | 33015 |
| YP_009204196.1 | NC_028861_p5 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6337 | 6534 |
| YP_009204213.1 | NC_028861_p22 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 20643 | 23102 |
| YP_009204248.1 | NC_028861_p57 | hypothetical protein | phrog_21149 | unknown function | unknown function | 1 | 40565 | 40768 |
| YP_009204225.1 | NC_028861_p34 | hypothetical protein | phrog_23845 | unknown function | unknown function | 1 | 30786 | 31076 |
| YP_009204212.1 | NC_028861_p21 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 20199 | 20639 |
| YP_009204204.1 | NC_028861_p13 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9947 | 10567 |
| YP_009204238.1 | NC_028861_p47 | hypothetical protein | phrog_7826 | unknown function | unknown function | 1 | 36657 | 36902 |
| YP_009204233.1 | NC_028861_p42 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 33012 | 34091 |
| YP_009204253.1 | NC_028861_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43059 | 43412 |
| YP_009204195.1 | NC_028861_p4 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 3425 | 6340 |
| YP_009204214.1 | NC_028861_p23 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23102 | 24469 |
| YP_009204220.1 | NC_028861_p29 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 28264 | 28620 |
| YP_009204229.1 | NC_028861_p38 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 31952 | 32119 |
| YP_009204256.1 | NC_028861_p65 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 44241 | 44540 |
| YP_009204193.1 | NC_028861_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 359 | 1903 |
| YP_009204203.1 | NC_028861_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9474 | 9932 |
| YP_009204202.1 | NC_028861_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9223 | 9477 |
| YP_009204215.1 | NC_028861_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24498 | 24881 |
| YP_009204230.1 | NC_028861_p39 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 32112 | 32426 |
| YP_009204236.1 | NC_028861_p45 | hypothetical protein | phrog_1374 | unknown function | unknown function | 1 | 36055 | 36249 |
| YP_009204199.1 | NC_028861_p8 | hypothetical protein | phrog_24650 | head-tail connector protein | connector | 1 | 8146 | 8343 |
| YP_009204217.1 | NC_028861_p26 | lysin A | phrog_317 | endolysin | lysis | 1 | 25277 | 26638 |
| YP_009204201.1 | NC_028861_p10 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 8880 | 9236 |
| YP_009204237.1 | NC_028861_p46 | hypothetical protein | phrog_19129 | unknown function | unknown function | 1 | 36328 | 36657 |
| YP_009204192.1 | NC_028861_p1 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 52 | 387 |
| YP_009204240.1 | NC_028861_p49 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37465 | 38049 |
| YP_009204235.1 | NC_028861_p44 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 35492 | 36058 |
| YP_009204245.1 | NC_028861_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39695 | 39829 |
| YP_009204194.1 | NC_028861_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1900 | 3444 |
| YP_009204223.1 | NC_028861_p32 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 29586 | 30014 |
| YP_009204254.1 | NC_028861_p63 | hypothetical protein | phrog_7328 | unknown function | unknown function | 1 | 43594 | 43869 |
| YP_009204250.1 | NC_028861_p59 | hypothetical protein | phrog_19791 | unknown function | unknown function | 1 | 41004 | 41429 |
| YP_009204242.1 | NC_028861_p51 | hypothetical protein | phrog_23207 | unknown function | unknown function | 1 | 38369 | 38662 |
| YP_009204209.1 | NC_028861_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16851 | 18575 |
| YP_009204211.1 | NC_028861_p20 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19051 | 20202 |
| YP_009204243.1 | NC_028861_p52 | hypothetical protein | phrog_16002 | unknown function | unknown function | 1 | 38662 | 39297 |
| YP_009204239.1 | NC_028861_p48 | hypothetical protein | phrog_7576 | unknown function | unknown function | 1 | 36899 | 37468 |
| YP_009204221.1 | NC_028861_p30 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 28613 | 29269 |
| YP_009204251.1 | NC_028861_p60 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 41465 | 42217 |
| YP_009204226.1 | NC_028861_p35 | hypothetical protein | phrog_20257 | unknown function | unknown function | 1 | 31073 | 31381 |
| YP_009204200.1 | NC_028861_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 8362 | 8880 |
| YP_009204197.1 | NC_028861_p6 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6601 | 7170 |
| YP_009204241.1 | NC_028861_p50 | hypothetical protein | phrog_21349 | unknown function | unknown function | 1 | 38049 | 38363 |
| YP_009204210.1 | NC_028861_p19 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18575 | 19054 |
| YP_009204216.1 | NC_028861_p25 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 24893 | 25249 |
| YP_009204252.1 | NC_028861_p61 | hypothetical protein | phrog_25837 | unknown function | unknown function | 1 | 42283 | 42912 |
| YP_009204231.1 | NC_028861_p40 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 32423 | 32554 |