Genomic map of Mycobacterium phage FlagStaff (NC_028861)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028861
Definition
Mycobacterium phage FlagStaff, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
44576
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
68.52
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009204219.1 NC_028861_p28 holin phrog_7198 holin lysis 1 27909 28259
YP_009204234.1 NC_028861_p43 RecT phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 34088 35491
YP_009204205.1 NC_028861_p14 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 10592 11628
YP_009204206.1 NC_028861_p15 tail assembly chaperone phrog_1861 unknown function unknown function 1 10592 11215
YP_009204218.1 NC_028861_p27 lysin B phrog_102 endolysin lysis 1 26635 27852
YP_009204222.1 NC_028861_p31 hypothetical protein phrog_7506 recombination directionality factor integration and excision 1 29350 29589
YP_009204207.1 NC_028861_p16 tapemeasure protein phrog_971 endolysin lysis 1 11630 15664
YP_009204255.1 NC_028861_p64 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43887 44213
YP_009204224.1 NC_028861_p33 hypothetical protein phrog_17562 unknown function unknown function 1 30079 30789
YP_009204244.1 NC_028861_p53 hypothetical protein phrog_7600 unknown function unknown function 1 39294 39698
YP_009204247.1 NC_028861_p56 hypothetical protein phrog_30654 unknown function unknown function 1 40069 40497
YP_009204227.1 NC_028861_p36 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 31381 31731
YP_009204208.1 NC_028861_p17 minor tail protein phrog_106 minor tail protein tail 1 15628 16848
YP_009204198.1 NC_028861_p7 major capsid protein phrog_10 major head protein head and packaging 1 7210 8112
YP_009204249.1 NC_028861_p58 hypothetical protein singleton unknown function unknown function 1 40765 40902
YP_009204246.1 NC_028861_p55 hypothetical protein singleton unknown function unknown function 1 39807 40016
YP_009204228.1 NC_028861_p37 hypothetical protein phrog_16899 unknown function unknown function 1 31731 31955
YP_009204232.1 NC_028861_p41 hypothetical protein phrog_2693 unknown function unknown function 1 32551 33015
YP_009204196.1 NC_028861_p5 hypothetical protein phrog_1757 unknown function unknown function 1 6337 6534
YP_009204213.1 NC_028861_p22 minor tail protein phrog_346 minor tail protein tail 1 20643 23102
YP_009204248.1 NC_028861_p57 hypothetical protein phrog_21149 unknown function unknown function 1 40565 40768
YP_009204225.1 NC_028861_p34 hypothetical protein phrog_23845 unknown function unknown function 1 30786 31076
YP_009204212.1 NC_028861_p21 minor tail protein phrog_1736 minor tail protein tail 1 20199 20639
YP_009204204.1 NC_028861_p13 major tail subunit phrog_117 major tail protein tail 1 9947 10567
YP_009204238.1 NC_028861_p47 hypothetical protein phrog_7826 unknown function unknown function 1 36657 36902
YP_009204233.1 NC_028861_p42 RecE phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 33012 34091
YP_009204253.1 NC_028861_p62 hypothetical protein singleton unknown function unknown function 1 43059 43412
YP_009204195.1 NC_028861_p4 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 3425 6340
YP_009204214.1 NC_028861_p23 minor tail protein phrog_416 minor tail protein tail 1 23102 24469
YP_009204220.1 NC_028861_p29 hypothetical protein phrog_1177 unknown function unknown function 1 28264 28620
YP_009204229.1 NC_028861_p38 hypothetical protein phrog_7486 unknown function unknown function 1 31952 32119
YP_009204256.1 NC_028861_p65 hypothetical protein phrog_4307 unknown function unknown function 1 44241 44540
YP_009204193.1 NC_028861_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 359 1903
YP_009204203.1 NC_028861_p12 hypothetical protein phrog_123 tail terminator connector 1 9474 9932
YP_009204202.1 NC_028861_p11 hypothetical protein phrog_387 neck protein connector 1 9223 9477
YP_009204215.1 NC_028861_p24 hypothetical protein phrog_240 head protein head and packaging 1 24498 24881
YP_009204230.1 NC_028861_p39 hypothetical protein phrog_7392 unknown function unknown function 1 32112 32426
YP_009204236.1 NC_028861_p45 hypothetical protein phrog_1374 unknown function unknown function 1 36055 36249
YP_009204199.1 NC_028861_p8 hypothetical protein phrog_24650 head-tail connector protein connector 1 8146 8343
YP_009204217.1 NC_028861_p26 lysin A phrog_317 endolysin lysis 1 25277 26638
YP_009204201.1 NC_028861_p10 head-to-tail connector phrog_763 head-tail adaptor connector 1 8880 9236
YP_009204237.1 NC_028861_p46 hypothetical protein phrog_19129 unknown function unknown function 1 36328 36657
YP_009204192.1 NC_028861_p1 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 52 387
YP_009204240.1 NC_028861_p49 RuvC phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37465 38049
YP_009204235.1 NC_028861_p44 hypothetical protein phrog_7227 unknown function unknown function 1 35492 36058
YP_009204245.1 NC_028861_p54 hypothetical protein singleton unknown function unknown function 1 39695 39829
YP_009204194.1 NC_028861_p3 portal protein phrog_104 portal protein head and packaging 1 1900 3444
YP_009204223.1 NC_028861_p32 hypothetical protein phrog_5081 unknown function unknown function 1 29586 30014
YP_009204254.1 NC_028861_p63 hypothetical protein phrog_7328 unknown function unknown function 1 43594 43869
YP_009204250.1 NC_028861_p59 hypothetical protein phrog_19791 unknown function unknown function 1 41004 41429
YP_009204242.1 NC_028861_p51 hypothetical protein phrog_23207 unknown function unknown function 1 38369 38662
YP_009204209.1 NC_028861_p18 minor tail protein phrog_110 minor tail protein tail 1 16851 18575
YP_009204211.1 NC_028861_p20 minor tail protein phrog_1565 minor tail protein tail 1 19051 20202
YP_009204243.1 NC_028861_p52 hypothetical protein phrog_16002 unknown function unknown function 1 38662 39297
YP_009204239.1 NC_028861_p48 hypothetical protein phrog_7576 unknown function unknown function 1 36899 37468
YP_009204221.1 NC_028861_p30 hypothetical protein phrog_798 unknown function unknown function 1 28613 29269
YP_009204251.1 NC_028861_p60 hypothetical protein phrog_2433 unknown function unknown function 1 41465 42217
YP_009204226.1 NC_028861_p35 hypothetical protein phrog_20257 unknown function unknown function 1 31073 31381
YP_009204200.1 NC_028861_p9 hypothetical protein phrog_1290 head-tail adaptor connector 1 8362 8880
YP_009204197.1 NC_028861_p6 hypothetical protein phrog_233 head scaffolding protein head and packaging 1 6601 7170
YP_009204241.1 NC_028861_p50 hypothetical protein phrog_21349 unknown function unknown function 1 38049 38363
YP_009204210.1 NC_028861_p19 minor tail protein phrog_1697 minor tail protein tail 1 18575 19054
YP_009204216.1 NC_028861_p25 hypothetical protein phrog_948 unknown function unknown function 1 24893 25249
YP_009204252.1 NC_028861_p61 hypothetical protein phrog_25837 unknown function unknown function 1 42283 42912
YP_009204231.1 NC_028861_p40 hypothetical protein phrog_6734 unknown function unknown function 1 32423 32554