| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028864 |
Definition |
Staphylococcus aureus phage phiNM4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43189 |
Host Name |
Staphylococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
34.73 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009204370.1 | NC_028864_p3 | hypothetical protein | phrog_2039 | unknown function | unknown function | -1 | 1569 | 2501 |
| YP_009204393.1 | NC_028864_p26 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 12560 | 12814 |
| YP_009204406.1 | NC_028864_p39 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16405 | 16578 |
| YP_009204395.1 | NC_028864_p28 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 13077 | 13478 |
| YP_009204416.1 | NC_028864_p49 | hypothetical protein | phrog_1161 | head-tail adaptor | connector | 1 | 23371 | 23721 |
| YP_009204368.1 | NC_028864_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 94 | 1299 |
| YP_009204429.1 | NC_028864_p62 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36481 | 36654 |
| YP_009204396.1 | NC_028864_p29 | hypothetical protein | phrog_2532 | unknown function | unknown function | 1 | 13475 | 13669 |
| YP_009204413.1 | NC_028864_p46 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 21695 | 22279 |
| YP_009204418.1 | NC_028864_p51 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24055 | 24468 |
| YP_009204372.1 | NC_028864_p5 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 3010 | 3324 |
| YP_009204407.1 | NC_028864_p40 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 16579 | 16980 |
| YP_009204434.1 | NC_028864_p67 | holin | phrog_263 | holin | lysis | 1 | 40670 | 40972 |
| YP_009204408.1 | NC_028864_p41 | hypothetical protein | phrog_1595 | terminase small subunit | head and packaging | 1 | 17364 | 17825 |
| YP_009204387.1 | NC_028864_p20 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10433 | 11212 |
| YP_009204371.1 | NC_028864_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2533 | 2997 |
| YP_009204402.1 | NC_028864_p35 | hypothetical protein | phrog_1122 | unknown function | unknown function | 1 | 15406 | 15600 |
| YP_009204424.1 | NC_028864_p57 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 29528 | 30469 |
| YP_009204381.1 | NC_028864_p14 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 6359 | 6580 |
| YP_009204427.1 | NC_028864_p60 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 34277 | 36100 |
| YP_009204421.1 | NC_028864_p54 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 25531 | 26037 |
| YP_009204379.1 | NC_028864_p12 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 5836 | 5997 |
| YP_009204412.1 | NC_028864_p45 | hypothetical protein | phrog_2881 | dCMP hydroxymethylase | DNA, RNA and nucleotide metabolism | 1 | 21386 | 21592 |
| YP_009204382.1 | NC_028864_p15 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6573 | 7361 |
| YP_009204422.1 | NC_028864_p55 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 26082 | 26366 |
| YP_009204377.1 | NC_028864_p10 | hypothetical protein | phrog_4309 | unknown function | unknown function | 1 | 5313 | 5531 |
| YP_009204399.1 | NC_028864_p32 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14389 | 14637 |
| YP_009204409.1 | NC_028864_p42 | phage terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 17818 | 19041 |
| YP_009204417.1 | NC_028864_p50 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 23733 | 24068 |
| YP_009204433.1 | NC_028864_p66 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 40219 | 40614 |
| YP_009204390.1 | NC_028864_p23 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11608 | 12015 |
| YP_009204425.1 | NC_028864_p58 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 30480 | 32366 |
| YP_009204404.1 | NC_028864_p37 | hypothetical protein | phrog_555 | unknown function | unknown function | 1 | 15793 | 16029 |
| YP_009204411.1 | NC_028864_p44 | phage head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 20431 | 21384 |
| YP_009204432.1 | NC_028864_p65 | tail fiber | phrog_1125 | tail fiber protein | tail | 1 | 39041 | 40213 |
| YP_009204435.1 | NC_028864_p68 | amidase | phrog_489 | endolysin | lysis | 1 | 40984 | 42438 |
| YP_009204376.1 | NC_028864_p9 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 4548 | 5297 |
| YP_009204386.1 | NC_028864_p19 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9653 | 10423 |
| YP_009204369.1 | NC_028864_p2 | excisionase | phrog_2033 | excisionase | integration and excision | 1 | 1410 | 1589 |
| YP_009204420.1 | NC_028864_p53 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 24907 | 25464 |
| YP_009204373.1 | NC_028864_p6 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3476 | 3712 |
| YP_009204415.1 | NC_028864_p48 | hypothetical protein | phrog_2406 | unknown function | unknown function | 1 | 23222 | 23365 |
| YP_009204426.1 | NC_028864_p59 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 32379 | 34277 |
| YP_009204414.1 | NC_028864_p47 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 22296 | 23210 |
| YP_009204394.1 | NC_028864_p27 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12820 | 13062 |
| YP_009204430.1 | NC_028864_p63 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36694 | 36993 |
| YP_009204375.1 | NC_028864_p8 | hypothetical protein | phrog_4989 | unknown function | unknown function | -1 | 4006 | 4488 |
| YP_009204385.1 | NC_028864_p18 | hypothetical protein | phrog_2232 | unknown function | unknown function | -1 | 8731 | 9588 |
| YP_009204374.1 | NC_028864_p7 | hypothetical protein | phrog_1534 | unknown function | unknown function | 1 | 3726 | 3905 |
| YP_009204428.1 | NC_028864_p61 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 36100 | 36477 |
| YP_009204391.1 | NC_028864_p24 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12015 | 12200 |
| YP_009204403.1 | NC_028864_p36 | hypothetical protein | phrog_1616 | unknown function | unknown function | 1 | 15597 | 15800 |
| YP_009204405.1 | NC_028864_p38 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 16022 | 16408 |
| YP_009204397.1 | NC_028864_p30 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13666 | 14115 |
| YP_009204410.1 | NC_028864_p43 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 19038 | 20462 |
| YP_009204388.1 | NC_028864_p21 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 11206 | 11364 |
| YP_009204423.1 | NC_028864_p56 | phage tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 26370 | 29513 |
| YP_009204400.1 | NC_028864_p33 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14630 | 15166 |
| YP_009204384.1 | NC_028864_p17 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 7954 | 8625 |
| YP_009204431.1 | NC_028864_p64 | cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 37130 | 39028 |
| YP_009204378.1 | NC_028864_p11 | DNA binding protein | phrog_534 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5561 | 5824 |
| YP_009204398.1 | NC_028864_p31 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 14112 | 14396 |
| YP_009204401.1 | NC_028864_p34 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15203 | 15409 |
| YP_009204389.1 | NC_028864_p22 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11377 | 11598 |
| YP_009204419.1 | NC_028864_p52 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 24481 | 24906 |
| YP_009204392.1 | NC_028864_p25 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12201 | 12560 |
| YP_009204383.1 | NC_028864_p16 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7390 | 7941 |
| YP_009204380.1 | NC_028864_p13 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6089 | 6349 |