Genomic map of Staphylococcus virus phiNM4 (NC_028864)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028864
Definition
Staphylococcus aureus phage phiNM4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43189
Host Name
Staphylococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
34.73
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009204370.1 NC_028864_p3 hypothetical protein phrog_2039 unknown function unknown function -1 1569 2501
YP_009204393.1 NC_028864_p26 hypothetical protein phrog_236 nucleotide kinase other 1 12560 12814
YP_009204406.1 NC_028864_p39 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 16405 16578
YP_009204395.1 NC_028864_p28 hypothetical protein phrog_467 unknown function unknown function 1 13077 13478
YP_009204416.1 NC_028864_p49 hypothetical protein phrog_1161 head-tail adaptor connector 1 23371 23721
YP_009204368.1 NC_028864_p1 integrase phrog_1 integrase integration and excision -1 94 1299
YP_009204429.1 NC_028864_p62 hypothetical protein phrog_134 unknown function unknown function 1 36481 36654
YP_009204396.1 NC_028864_p29 hypothetical protein phrog_2532 unknown function unknown function 1 13475 13669
YP_009204413.1 NC_028864_p46 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 21695 22279
YP_009204418.1 NC_028864_p51 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 24055 24468
YP_009204372.1 NC_028864_p5 repressor phrog_8 transcriptional regulator transcription regulation -1 3010 3324
YP_009204407.1 NC_028864_p40 hypothetical protein phrog_1058 unknown function unknown function 1 16579 16980
YP_009204434.1 NC_028864_p67 holin phrog_263 holin lysis 1 40670 40972
YP_009204408.1 NC_028864_p41 hypothetical protein phrog_1595 terminase small subunit head and packaging 1 17364 17825
YP_009204387.1 NC_028864_p20 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10433 11212
YP_009204371.1 NC_028864_p4 hypothetical protein phrog_87 metallo-protease other -1 2533 2997
YP_009204402.1 NC_028864_p35 hypothetical protein phrog_1122 unknown function unknown function 1 15406 15600
YP_009204424.1 NC_028864_p57 hypothetical protein phrog_33 distal tail protein Dit tail 1 29528 30469
YP_009204381.1 NC_028864_p14 hypothetical protein phrog_946 unknown function unknown function 1 6359 6580
YP_009204427.1 NC_028864_p60 hypothetical protein phrog_257 minor tail protein tail 1 34277 36100
YP_009204421.1 NC_028864_p54 hypothetical protein phrog_183 tail chaperone protein tail 1 25531 26037
YP_009204379.1 NC_028864_p12 hypothetical protein phrog_369 unknown function unknown function 1 5836 5997
YP_009204412.1 NC_028864_p45 hypothetical protein phrog_2881 dCMP hydroxymethylase DNA, RNA and nucleotide metabolism 1 21386 21592
YP_009204382.1 NC_028864_p15 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6573 7361
YP_009204422.1 NC_028864_p55 hypothetical protein phrog_1404 tail protein tail 1 26082 26366
YP_009204377.1 NC_028864_p10 hypothetical protein phrog_4309 unknown function unknown function 1 5313 5531
YP_009204399.1 NC_028864_p32 hypothetical protein phrog_266 unknown function unknown function 1 14389 14637
YP_009204409.1 NC_028864_p42 phage terminase phrog_2 terminase large subunit head and packaging 1 17818 19041
YP_009204417.1 NC_028864_p50 hypothetical protein phrog_25 head closure Hc1 connector 1 23733 24068
YP_009204433.1 NC_028864_p66 hypothetical protein phrog_1262 unknown function unknown function 1 40219 40614
YP_009204390.1 NC_028864_p23 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11608 12015
YP_009204425.1 NC_028864_p58 hypothetical protein phrog_663 minor head protein head and packaging 1 30480 32366
YP_009204404.1 NC_028864_p37 hypothetical protein phrog_555 unknown function unknown function 1 15793 16029
YP_009204411.1 NC_028864_p44 phage head morphogenesis protein phrog_115 minor head protein head and packaging 1 20431 21384
YP_009204432.1 NC_028864_p65 tail fiber phrog_1125 tail fiber protein tail 1 39041 40213
YP_009204435.1 NC_028864_p68 amidase phrog_489 endolysin lysis 1 40984 42438
YP_009204376.1 NC_028864_p9 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 4548 5297
YP_009204386.1 NC_028864_p19 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9653 10423
YP_009204369.1 NC_028864_p2 excisionase phrog_2033 excisionase integration and excision 1 1410 1589
YP_009204420.1 NC_028864_p53 hypothetical protein phrog_238 major tail protein tail 1 24907 25464
YP_009204373.1 NC_028864_p6 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 3476 3712
YP_009204415.1 NC_028864_p48 hypothetical protein phrog_2406 unknown function unknown function 1 23222 23365
YP_009204426.1 NC_028864_p59 hypothetical protein phrog_287 minor tail protein tail 1 32379 34277
YP_009204414.1 NC_028864_p47 major capsid protein phrog_10 major head protein head and packaging 1 22296 23210
YP_009204394.1 NC_028864_p27 hypothetical protein phrog_258 virulence associated other 1 12820 13062
YP_009204430.1 NC_028864_p63 hypothetical protein phrog_276 unknown function unknown function 1 36694 36993
YP_009204375.1 NC_028864_p8 hypothetical protein phrog_4989 unknown function unknown function -1 4006 4488
YP_009204385.1 NC_028864_p18 hypothetical protein phrog_2232 unknown function unknown function -1 8731 9588
YP_009204374.1 NC_028864_p7 hypothetical protein phrog_1534 unknown function unknown function 1 3726 3905
YP_009204428.1 NC_028864_p61 hypothetical protein phrog_300 tail fiber protein tail 1 36100 36477
YP_009204391.1 NC_028864_p24 hypothetical protein phrog_299 unknown function unknown function 1 12015 12200
YP_009204403.1 NC_028864_p36 hypothetical protein phrog_1616 unknown function unknown function 1 15597 15800
YP_009204405.1 NC_028864_p38 hypothetical protein phrog_301 secreted protein other 1 16022 16408
YP_009204397.1 NC_028864_p30 hypothetical protein phrog_98 unknown function unknown function 1 13666 14115
YP_009204410.1 NC_028864_p43 phage portal protein phrog_64 portal protein head and packaging 1 19038 20462
YP_009204388.1 NC_028864_p21 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 11206 11364
YP_009204423.1 NC_028864_p56 phage tape measure protein phrog_58 tail length tape measure protein tail 1 26370 29513
YP_009204400.1 NC_028864_p33 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14630 15166
YP_009204384.1 NC_028864_p17 hypothetical protein phrog_398 unknown function unknown function 1 7954 8625
YP_009204431.1 NC_028864_p64 cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other 1 37130 39028
YP_009204378.1 NC_028864_p11 DNA binding protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 5561 5824
YP_009204398.1 NC_028864_p31 hypothetical protein phrog_1034 unknown function unknown function 1 14112 14396
YP_009204401.1 NC_028864_p34 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 15203 15409
YP_009204389.1 NC_028864_p22 hypothetical protein phrog_433 unknown function unknown function 1 11377 11598
YP_009204419.1 NC_028864_p52 hypothetical protein phrog_176 tail terminator connector 1 24481 24906
YP_009204392.1 NC_028864_p25 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12201 12560
YP_009204383.1 NC_028864_p16 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7390 7941
YP_009204380.1 NC_028864_p13 hypothetical protein phrog_401 unknown function unknown function 1 6089 6349