Genomic map of Tsukamurella phage TIN2 (NC_028865)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028865
Definition
Tsukamurella phage TIN2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tinduovirus.
DB of origin
REFSEQ
Length
76964
Host Name
Tsukamurella inchonensis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
107
%GC
58.91
Number of singletons
12
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009204487.1 NC_028865_p52 hypothetical protein phrog_8951 unknown function unknown function -1 46218 46499
YP_009204498.1 NC_028865_p63 hypothetical protein phrog_6792 unknown function unknown function -1 51020 51499
YP_009204462.1 NC_028865_p27 hypothetical protein phrog_565 holin lysis 1 32133 32570
YP_009204448.1 NC_028865_p13 hypothetical protein phrog_5299 unknown function unknown function 1 10457 10942
YP_009204532.1 NC_028865_p97 hypothetical protein phrog_35038 unknown function unknown function -1 68191 68523
YP_009204494.1 NC_028865_p59 hypothetical protein phrog_8296 unknown function unknown function -1 49431 49892
YP_009204484.1 NC_028865_p49 DNA binding protein phrog_6401 DNA binding protein DNA, RNA and nucleotide metabolism -1 44269 44454
YP_009204454.1 NC_028865_p19 hypothetical protein phrog_5287 minor tail protein tail 1 22205 24736
YP_009204451.1 NC_028865_p16 tail assembly protein phrog_3096 tail assembly chaperone tail 1 12511 13358
YP_009204495.1 NC_028865_p60 hypothetical protein singleton unknown function unknown function -1 49899 50123
YP_009204477.1 NC_028865_p42 hypothetical protein phrog_1673 unknown function unknown function -1 40515 40769
YP_009204450.1 NC_028865_p15 major tail protein phrog_290 minor tail protein tail 1 11295 12317
YP_009204482.1 NC_028865_p47 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 42493 43635
YP_009204526.1 NC_028865_p91 hypothetical protein phrog_6708 unknown function unknown function -1 65775 66695
YP_009204461.1 NC_028865_p26 hypothetical protein phrog_240 head protein head and packaging 1 31682 32047
YP_009204538.1 NC_028865_p103 hypothetical protein phrog_7062 unknown function unknown function -1 72406 72684
YP_009204467.1 NC_028865_p32 holin phrog_2272 unknown function unknown function 1 35453 35908
YP_009204436.1 NC_028865_p1 small terminase subunit phrog_6902 terminase small subunit head and packaging 1 59 1402
YP_009204479.1 NC_028865_p44 hypothetical protein phrog_28426 unknown function unknown function -1 41251 41415
YP_009204528.1 NC_028865_p93 hypothetical protein phrog_33221 unknown function unknown function -1 67144 67260
YP_009204497.1 NC_028865_p62 hypothetical protein singleton unknown function unknown function -1 50755 50964
YP_009204541.1 NC_028865_p106 hypothetical protein phrog_7609 unknown function unknown function -1 75398 75892
YP_009204464.1 NC_028865_p29 lysozyme phrog_880 endolysin lysis 1 32896 33525
YP_009204518.1 NC_028865_p83 hypothetical protein phrog_7008 unknown function unknown function -1 62034 62675
YP_009204490.1 NC_028865_p55 hypothetical protein phrog_5686 unknown function unknown function -1 47319 48353
YP_009204437.1 NC_028865_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 1395 3386
YP_009204489.1 NC_028865_p54 hypothetical protein singleton unknown function unknown function -1 47164 47319
YP_009204516.1 NC_028865_p81 hypothetical protein phrog_5298 cobalamin biosynthesis protein moron, auxiliary metabolic gene and host takeover -1 58447 60351
YP_009204475.1 NC_028865_p40 DNA methylase phrog_67 DNA methyltransferase other -1 39337 40059
YP_009204503.1 NC_028865_p68 hypothetical protein phrog_5406 unknown function unknown function -1 53766 54434
YP_009204441.1 NC_028865_p6 hypothetical protein phrog_976 head maturation protease head and packaging 1 5979 7187
YP_009204534.1 NC_028865_p99 hypothetical protein phrog_9619 unknown function unknown function -1 71080 71541
YP_009204439.1 NC_028865_p4 hypothetical protein phrog_32910 unknown function unknown function 1 5207 5632
YP_009204468.1 NC_028865_p33 hypothetical protein phrog_2344 unknown function unknown function 1 35896 36399
YP_009204529.1 NC_028865_p94 hypothetical protein phrog_33867 unknown function unknown function -1 67270 67422
YP_009204460.1 NC_028865_p25 hypothetical protein phrog_24602 unknown function unknown function 1 31374 31682
YP_009204540.1 NC_028865_p105 hypothetical protein phrog_7096 unknown function unknown function -1 74972 75202
YP_009204455.1 NC_028865_p20 hypothetical protein phrog_1887 tail protein tail 1 24736 26484
YP_009204542.1 NC_028865_p107 hypothetical protein phrog_5362 DNA primase DNA, RNA and nucleotide metabolism -1 75893 76804
YP_009204531.1 NC_028865_p96 hypothetical protein phrog_31553 unknown function unknown function -1 67732 68100
YP_009204446.1 NC_028865_p11 hypothetical protein phrog_195 head-tail adaptor connector 1 9466 9978
YP_009204483.1 NC_028865_p48 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 43655 44272
YP_009204485.1 NC_028865_p50 hypothetical protein phrog_35101 unknown function unknown function -1 44438 44695
YP_009204533.1 NC_028865_p98 hypothetical protein singleton unknown function unknown function -1 69932 70078
YP_009204520.1 NC_028865_p85 hypothetical protein phrog_17918 unknown function unknown function -1 62830 63030
YP_009204521.1 NC_028865_p86 hypothetical protein phrog_7001 unknown function unknown function -1 63040 63456
YP_009204465.1 NC_028865_p30 hypothetical protein phrog_102 endolysin lysis 1 33665 34528
YP_009204491.1 NC_028865_p56 hypothetical protein phrog_6746 unknown function unknown function -1 48469 48798
YP_009204530.1 NC_028865_p95 hypothetical protein phrog_32541 unknown function unknown function -1 67511 67732
YP_009204502.1 NC_028865_p67 hypothetical protein phrog_7963 unknown function unknown function -1 53451 53714
YP_009204504.1 NC_028865_p69 hypothetical protein phrog_21323 unknown function unknown function -1 54415 54567
YP_009204505.1 NC_028865_p70 hypothetical protein phrog_7690 unknown function unknown function -1 54569 54961
YP_009204512.1 NC_028865_p77 hypothetical protein singleton unknown function unknown function -1 57166 57495
YP_009204471.1 NC_028865_p36 hypothetical protein phrog_12343 unknown function unknown function -1 36865 37086
YP_009204457.1 NC_028865_p22 hypothetical protein phrog_36171 unknown function unknown function 1 28415 29767
YP_009204456.1 NC_028865_p21 hypothetical protein phrog_38533 unknown function unknown function 1 26484 28415
YP_009204523.1 NC_028865_p88 hypothetical protein phrog_33965 unknown function unknown function -1 64397 64621
YP_009204500.1 NC_028865_p65 hypothetical protein phrog_29332 unknown function unknown function -1 51802 53172
YP_009204463.1 NC_028865_p28 hypothetical protein phrog_6901 unknown function unknown function 1 32573 32899
YP_009204539.1 NC_028865_p104 primase phrog_5311 helicase DNA, RNA and nucleotide metabolism -1 72681 74975
YP_009204535.1 NC_028865_p100 hypothetical protein singleton unknown function unknown function -1 71528 71842
YP_009204478.1 NC_028865_p43 hypothetical protein phrog_3301 pyrophosphatase other -1 40769 41254
YP_009204458.1 NC_028865_p23 hypothetical protein singleton unknown function unknown function 1 29782 30327
YP_009204459.1 NC_028865_p24 hypothetical protein phrog_416 minor tail protein tail 1 30337 31377
YP_009204517.1 NC_028865_p82 ATPase family protein phrog_5424 ATPase other -1 60354 61955
YP_009204486.1 NC_028865_p51 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 44720 46147
YP_009204445.1 NC_028865_p10 hypothetical protein phrog_6879 head-tail connector protein connector 1 9166 9459
YP_009204508.1 NC_028865_p73 hypothetical protein phrog_32099 unknown function unknown function -1 56244 56528
YP_009204525.1 NC_028865_p90 hypothetical protein phrog_30996 unknown function unknown function -1 65191 65319
YP_009204507.1 NC_028865_p72 hypothetical protein phrog_1342 unknown function unknown function -1 55671 56231
YP_009204501.1 NC_028865_p66 hypothetical protein phrog_11430 unknown function unknown function -1 53287 53454
YP_009204440.1 NC_028865_p5 hypothetical protein phrog_6679 unknown function unknown function 1 5758 5964
YP_009204510.1 NC_028865_p75 hypothetical protein singleton unknown function unknown function -1 56694 56897
YP_009204493.1 NC_028865_p58 hypothetical protein phrog_9303 unknown function unknown function -1 49132 49434
YP_009204513.1 NC_028865_p78 hypothetical protein singleton unknown function unknown function -1 57497 57703
YP_009204527.1 NC_028865_p92 hypothetical protein phrog_10550 unknown function unknown function -1 66840 67151
YP_009204444.1 NC_028865_p9 hypothetical protein phrog_7074 head-tail connector protein connector 1 8898 9089
YP_009204509.1 NC_028865_p74 hypothetical protein phrog_33539 unknown function unknown function -1 56525 56701
YP_009204442.1 NC_028865_p7 structural protein phrog_5455 head decoration head and packaging 1 7221 7667
YP_009204449.1 NC_028865_p14 hypothetical protein phrog_8128 neck protein connector 1 10956 11291
YP_009204438.1 NC_028865_p3 hypothetical protein phrog_113 portal protein head and packaging 1 3502 5220
YP_009204492.1 NC_028865_p57 hypothetical protein phrog_7044 unknown function unknown function -1 48776 49132
YP_009204519.1 NC_028865_p84 hypothetical protein singleton unknown function unknown function -1 62672 62833
YP_009204466.1 NC_028865_p31 peptidase phrog_6985 endolysin lysis 1 34611 35456
YP_009204522.1 NC_028865_p87 hypothetical protein phrog_6032 unknown function unknown function -1 63459 64400
YP_009204470.1 NC_028865_p35 hypothetical protein singleton unknown function unknown function -1 36723 36878
YP_009204447.1 NC_028865_p12 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 9966 10460
YP_009204473.1 NC_028865_p38 hypothetical protein phrog_6890 endonuclease DNA, RNA and nucleotide metabolism -1 38469 38891
YP_009204488.1 NC_028865_p53 hypothetical protein phrog_7649 unknown function unknown function -1 46496 47014
YP_009204443.1 NC_028865_p8 major capsid protein phrog_29 major head protein head and packaging 1 7681 8886
YP_009204514.1 NC_028865_p79 hypothetical protein phrog_35199 unknown function unknown function -1 57700 58236
YP_009204496.1 NC_028865_p61 hypothetical protein phrog_6622 unknown function unknown function -1 50120 50758
YP_009204506.1 NC_028865_p71 hypothetical protein phrog_6646 unknown function unknown function -1 55130 55552
YP_009204480.1 NC_028865_p45 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 41454 42020
YP_009204476.1 NC_028865_p41 hypothetical protein phrog_8142 unknown function unknown function -1 40254 40505
YP_009204499.1 NC_028865_p64 hypothetical protein phrog_6495 unknown function unknown function -1 51549 51788
YP_009204474.1 NC_028865_p39 hypothetical protein phrog_31056 unknown function unknown function -1 38958 39092
YP_009204536.1 NC_028865_p101 hypothetical protein phrog_33219 unknown function unknown function -1 71839 72165
YP_009204511.1 NC_028865_p76 hypothetical protein phrog_1581 unknown function unknown function -1 56909 57166
YP_009204537.1 NC_028865_p102 hypothetical protein phrog_30484 unknown function unknown function -1 72155 72409
YP_009204453.1 NC_028865_p18 tape measure protein phrog_5448 tail length tape measure protein tail 1 13467 22205
YP_009204472.1 NC_028865_p37 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 37094 38290
YP_009204515.1 NC_028865_p80 hypothetical protein singleton unknown function unknown function -1 58226 58450
YP_009204524.1 NC_028865_p89 hypothetical protein phrog_38508 unknown function unknown function -1 64878 65186
YP_009204469.1 NC_028865_p34 hypothetical protein phrog_2525 unknown function unknown function 1 36392 36757
YP_009204452.1 NC_028865_p17 tail assembly protein phrog_3096 tail assembly chaperone tail 1 12511 13095
YP_009204481.1 NC_028865_p46 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 42135 42503