| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028871 |
Definition |
Listeria phage vB_LmoS_188, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
38392 |
Host Name |
Listeria monocytogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
35.87 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009204876.1 | NC_028871_p33 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26899 | 27111 |
| YP_009204855.1 | NC_028871_p12 | tail shaft protein Tsh | phrog_41 | major tail protein | tail | 1 | 7809 | 8495 |
| YP_009204888.1 | NC_028871_p45 | hypothetical protein | phrog_12891 | unknown function | unknown function | 1 | 33182 | 33379 |
| YP_009204844.1 | NC_028871_p1 | terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 25 | 765 |
| YP_009204889.1 | NC_028871_p46 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 33376 | 33801 |
| YP_009204872.1 | NC_028871_p29 | hypothetical protein | phrog_9828 | unknown function | unknown function | -1 | 24388 | 25089 |
| YP_009204857.1 | NC_028871_p14 | hypothetical protein | phrog_7794 | unknown function | unknown function | 1 | 9015 | 9290 |
| YP_009204853.1 | NC_028871_p10 | tail component protein | phrog_556 | minor head protein | head and packaging | 1 | 7119 | 7436 |
| YP_009204895.1 | NC_028871_p52 | hypothetical protein | phrog_5780 | unknown function | unknown function | 1 | 35099 | 35500 |
| YP_009204873.1 | NC_028871_p30 | hypothetical protein | phrog_14272 | unknown function | unknown function | -1 | 25148 | 25855 |
| YP_009204878.1 | NC_028871_p35 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 27438 | 28217 |
| YP_009204871.1 | NC_028871_p28 | superinfection immunity protein | phrog_11062 | unknown function | unknown function | -1 | 23491 | 24366 |
| YP_009204883.1 | NC_028871_p40 | recombinational DNA repair protein RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 30583 | 31398 |
| YP_009204864.1 | NC_028871_p21 | holin-associated protein | phrog_134 | unknown function | unknown function | 1 | 18388 | 18534 |
| YP_009204875.1 | NC_028871_p32 | Cro/CI family XRE family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 26311 | 26733 |
| YP_009204866.1 | NC_028871_p23 | holin | phrog_297 | holin | lysis | 1 | 18877 | 19161 |
| YP_009204892.1 | NC_028871_p49 | hypothetical protein | phrog_6964 | unknown function | unknown function | 1 | 34175 | 34465 |
| YP_009204870.1 | NC_028871_p27 | hypothetical protein | phrog_3243 | unknown function | unknown function | -1 | 22379 | 23266 |
| YP_009204899.1 | NC_028871_p56 | hypothetical protein | phrog_5229 | unknown function | unknown function | 1 | 36544 | 36927 |
| YP_009204890.1 | NC_028871_p47 | phenylalanyl-tRNA synthetase subunit beta | phrog_11760 | unknown function | unknown function | 1 | 33802 | 33975 |
| YP_009204880.1 | NC_028871_p37 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 28898 | 29188 |
| YP_009204846.1 | NC_028871_p3 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 2092 | 3648 |
| YP_009204881.1 | NC_028871_p38 | hypothetical protein | phrog_5174 | unknown function | unknown function | 1 | 29204 | 29392 |
| YP_009204859.1 | NC_028871_p16 | holin-like tail component protein | phrog_33 | distal tail protein Dit | tail | 1 | 14104 | 14928 |
| YP_009204886.1 | NC_028871_p43 | hypothetical protein | phrog_9484 | unknown function | unknown function | 1 | 32515 | 32784 |
| YP_009204894.1 | NC_028871_p51 | RNA-binding protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 34860 | 35087 |
| YP_009204850.1 | NC_028871_p7 | hypothetical protein | phrog_7944 | unknown function | unknown function | 1 | 6255 | 6410 |
| YP_009204884.1 | NC_028871_p41 | DnaD domain protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31419 | 32336 |
| YP_009204860.1 | NC_028871_p17 | minor structural protein | phrog_326 | tail protein with endopeptidase domain | other | 1 | 14941 | 15954 |
| YP_009204865.1 | NC_028871_p22 | hypothetical protein | phrog_3999 | unknown function | unknown function | 1 | 18575 | 18880 |
| YP_009204891.1 | NC_028871_p48 | hypothetical protein | phrog_11379 | unknown function | unknown function | 1 | 33972 | 34178 |
| YP_009204874.1 | NC_028871_p31 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 25870 | 26295 |
| YP_009204879.1 | NC_028871_p36 | hypothetical protein | phrog_1124 | transcriptional regulator | transcription regulation | 1 | 28340 | 28873 |
| YP_009204882.1 | NC_028871_p39 | Endonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29624 | 30583 |
| YP_009204900.1 | NC_028871_p57 | hypothetical protein | phrog_7279 | unknown function | unknown function | 1 | 36920 | 37045 |
| YP_009204898.1 | NC_028871_p55 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 36280 | 36540 |
| YP_009204896.1 | NC_028871_p53 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35497 | 35979 |
| YP_009204851.1 | NC_028871_p8 | head-tail connector protein | phrog_541 | head-tail adaptor | connector | 1 | 6411 | 6764 |
| YP_009204885.1 | NC_028871_p42 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 32333 | 32500 |
| YP_009204877.1 | NC_028871_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27170 | 27373 |
| YP_009204845.1 | NC_028871_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 758 | 2077 |
| YP_009204861.1 | NC_028871_p18 | hypothetical protein | phrog_4577 | tail protein | tail | 1 | 15951 | 16979 |
| YP_009204867.1 | NC_028871_p24 | N-acetylmuramoyl-L-alanine amidase | phrog_1794 | amidase | lysis | 1 | 19161 | 20111 |
| YP_009204903.1 | NC_028871_p60 | hypothetical protein | phrog_7230 | unknown function | unknown function | 1 | 38150 | 38377 |
| YP_009204863.1 | NC_028871_p20 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 18046 | 18387 |
| YP_009204897.1 | NC_028871_p54 | hypothetical protein | phrog_6184 | unknown function | unknown function | 1 | 36000 | 36191 |
| YP_009204893.1 | NC_028871_p50 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 34465 | 34650 |
| YP_009204902.1 | NC_028871_p59 | RNA polymerase sigma70 | phrog_1190 | RNA polymerase sigma factor | transcription regulation | 1 | 37317 | 37889 |
| YP_009204868.1 | NC_028871_p25 | hypothetical protein | phrog_38672 | unknown function | unknown function | 1 | 20130 | 20564 |
| YP_009204858.1 | NC_028871_p15 | tail length tape-measure protein | phrog_1293 | tail length tape measure protein | tail | 1 | 9295 | 14100 |
| YP_009204848.1 | NC_028871_p5 | capsid and scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4792 | 5346 |
| YP_009204847.1 | NC_028871_p4 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 3653 | 4696 |
| YP_009204852.1 | NC_028871_p9 | hypothetical protein | phrog_7907 | unknown function | unknown function | 1 | 6764 | 7129 |
| YP_009204901.1 | NC_028871_p58 | hypothetical protein | phrog_4556 | unknown function | unknown function | 1 | 37068 | 37223 |
| YP_009204854.1 | NC_028871_p11 | hypothetical protein | phrog_7815 | unknown function | unknown function | 1 | 7433 | 7804 |
| YP_009204856.1 | NC_028871_p13 | hypothetical protein | phrog_7828 | unknown function | unknown function | 1 | 8551 | 8982 |
| YP_009204887.1 | NC_028871_p44 | hypothetical protein | phrog_15289 | unknown function | unknown function | 1 | 32781 | 33179 |
| YP_009204862.1 | NC_028871_p19 | long tail fiber | phrog_3285 | minor tail protein | tail | 1 | 16976 | 18049 |
| YP_009204869.1 | NC_028871_p26 | integrase | phrog_1 | integrase | integration and excision | -1 | 21106 | 22299 |
| YP_009204849.1 | NC_028871_p6 | main capsid protein | phrog_422 | major head protein | head and packaging | 1 | 5369 | 6241 |