Genomic map of Listeria phage vB_LmoS_188 (NC_028871)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028871
Definition
Listeria phage vB_LmoS_188, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38392
Host Name
Listeria monocytogenes
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
35.87
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009204876.1 NC_028871_p33 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 26899 27111
YP_009204855.1 NC_028871_p12 tail shaft protein Tsh phrog_41 major tail protein tail 1 7809 8495
YP_009204888.1 NC_028871_p45 hypothetical protein phrog_12891 unknown function unknown function 1 33182 33379
YP_009204844.1 NC_028871_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 25 765
YP_009204889.1 NC_028871_p46 hypothetical protein phrog_98 unknown function unknown function 1 33376 33801
YP_009204872.1 NC_028871_p29 hypothetical protein phrog_9828 unknown function unknown function -1 24388 25089
YP_009204857.1 NC_028871_p14 hypothetical protein phrog_7794 unknown function unknown function 1 9015 9290
YP_009204853.1 NC_028871_p10 tail component protein phrog_556 minor head protein head and packaging 1 7119 7436
YP_009204895.1 NC_028871_p52 hypothetical protein phrog_5780 unknown function unknown function 1 35099 35500
YP_009204873.1 NC_028871_p30 hypothetical protein phrog_14272 unknown function unknown function -1 25148 25855
YP_009204878.1 NC_028871_p35 antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 27438 28217
YP_009204871.1 NC_028871_p28 superinfection immunity protein phrog_11062 unknown function unknown function -1 23491 24366
YP_009204883.1 NC_028871_p40 recombinational DNA repair protein RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 30583 31398
YP_009204864.1 NC_028871_p21 holin-associated protein phrog_134 unknown function unknown function 1 18388 18534
YP_009204875.1 NC_028871_p32 Cro/CI family XRE family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 26311 26733
YP_009204866.1 NC_028871_p23 holin phrog_297 holin lysis 1 18877 19161
YP_009204892.1 NC_028871_p49 hypothetical protein phrog_6964 unknown function unknown function 1 34175 34465
YP_009204870.1 NC_028871_p27 hypothetical protein phrog_3243 unknown function unknown function -1 22379 23266
YP_009204899.1 NC_028871_p56 hypothetical protein phrog_5229 unknown function unknown function 1 36544 36927
YP_009204890.1 NC_028871_p47 phenylalanyl-tRNA synthetase subunit beta phrog_11760 unknown function unknown function 1 33802 33975
YP_009204880.1 NC_028871_p37 hypothetical protein phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 28898 29188
YP_009204846.1 NC_028871_p3 portal protein phrog_533 portal protein head and packaging 1 2092 3648
YP_009204881.1 NC_028871_p38 hypothetical protein phrog_5174 unknown function unknown function 1 29204 29392
YP_009204859.1 NC_028871_p16 holin-like tail component protein phrog_33 distal tail protein Dit tail 1 14104 14928
YP_009204886.1 NC_028871_p43 hypothetical protein phrog_9484 unknown function unknown function 1 32515 32784
YP_009204894.1 NC_028871_p51 RNA-binding protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 34860 35087
YP_009204850.1 NC_028871_p7 hypothetical protein phrog_7944 unknown function unknown function 1 6255 6410
YP_009204884.1 NC_028871_p41 DnaD domain protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 31419 32336
YP_009204860.1 NC_028871_p17 minor structural protein phrog_326 tail protein with endopeptidase domain other 1 14941 15954
YP_009204865.1 NC_028871_p22 hypothetical protein phrog_3999 unknown function unknown function 1 18575 18880
YP_009204891.1 NC_028871_p48 hypothetical protein phrog_11379 unknown function unknown function 1 33972 34178
YP_009204874.1 NC_028871_p31 hypothetical protein phrog_87 metallo-protease other -1 25870 26295
YP_009204879.1 NC_028871_p36 hypothetical protein phrog_1124 transcriptional regulator transcription regulation 1 28340 28873
YP_009204882.1 NC_028871_p39 Endonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 29624 30583
YP_009204900.1 NC_028871_p57 hypothetical protein phrog_7279 unknown function unknown function 1 36920 37045
YP_009204898.1 NC_028871_p55 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 36280 36540
YP_009204896.1 NC_028871_p53 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 35497 35979
YP_009204851.1 NC_028871_p8 head-tail connector protein phrog_541 head-tail adaptor connector 1 6411 6764
YP_009204885.1 NC_028871_p42 hypothetical protein phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 32333 32500
YP_009204877.1 NC_028871_p34 hypothetical protein singleton unknown function unknown function -1 27170 27373
YP_009204845.1 NC_028871_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 758 2077
YP_009204861.1 NC_028871_p18 hypothetical protein phrog_4577 tail protein tail 1 15951 16979
YP_009204867.1 NC_028871_p24 N-acetylmuramoyl-L-alanine amidase phrog_1794 amidase lysis 1 19161 20111
YP_009204903.1 NC_028871_p60 hypothetical protein phrog_7230 unknown function unknown function 1 38150 38377
YP_009204863.1 NC_028871_p20 hypothetical protein phrog_1766 tail fiber protein tail 1 18046 18387
YP_009204897.1 NC_028871_p54 hypothetical protein phrog_6184 unknown function unknown function 1 36000 36191
YP_009204893.1 NC_028871_p50 hypothetical protein phrog_1494 unknown function unknown function 1 34465 34650
YP_009204902.1 NC_028871_p59 RNA polymerase sigma70 phrog_1190 RNA polymerase sigma factor transcription regulation 1 37317 37889
YP_009204868.1 NC_028871_p25 hypothetical protein phrog_38672 unknown function unknown function 1 20130 20564
YP_009204858.1 NC_028871_p15 tail length tape-measure protein phrog_1293 tail length tape measure protein tail 1 9295 14100
YP_009204848.1 NC_028871_p5 capsid and scaffold protein phrog_194 head scaffolding protein head and packaging 1 4792 5346
YP_009204847.1 NC_028871_p4 minor capsid protein phrog_581 minor head protein head and packaging 1 3653 4696
YP_009204852.1 NC_028871_p9 hypothetical protein phrog_7907 unknown function unknown function 1 6764 7129
YP_009204901.1 NC_028871_p58 hypothetical protein phrog_4556 unknown function unknown function 1 37068 37223
YP_009204854.1 NC_028871_p11 hypothetical protein phrog_7815 unknown function unknown function 1 7433 7804
YP_009204856.1 NC_028871_p13 hypothetical protein phrog_7828 unknown function unknown function 1 8551 8982
YP_009204887.1 NC_028871_p44 hypothetical protein phrog_15289 unknown function unknown function 1 32781 33179
YP_009204862.1 NC_028871_p19 long tail fiber phrog_3285 minor tail protein tail 1 16976 18049
YP_009204869.1 NC_028871_p26 integrase phrog_1 integrase integration and excision -1 21106 22299
YP_009204849.1 NC_028871_p6 main capsid protein phrog_422 major head protein head and packaging 1 5369 6241