Genomic map of Mycobacterium phage Pari (NC_028874)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028874
Definition
Mycobacterium phage Pari, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
50614
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
91
%GC
63.53
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009205118.1 NC_028874_p80 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47099 47398
YP_009205104.1 NC_028874_p66 hypothetical protein phrog_2864 unknown function unknown function -1 41624 41794
YP_009205098.1 NC_028874_p60 hypothetical protein phrog_397 unknown function unknown function -1 39512 39772
YP_009205060.1 NC_028874_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15753 16552
YP_009205041.1 NC_028874_p3 hypothetical protein phrog_226 minor tail protein tail 1 1066 1500
YP_009205057.1 NC_028874_p19 head to tail connector phrog_321 tail completion or Neck1 protein connector 1 13939 14334
YP_009205111.1 NC_028874_p73 hypothetical protein phrog_4285 transposase integration and excision -1 43697 44407
YP_009205039.1 NC_028874_p1 hypothetical protein phrog_21009 unknown function unknown function 1 599 754
YP_009205090.1 NC_028874_p52 RDF protein phrog_221 metallo-phosphoesterase other -1 36626 37393
YP_009205063.1 NC_028874_p25 minor tail protein phrog_106 minor tail protein tail 1 18588 20645
YP_009205117.1 NC_028874_p79 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46325 46837
YP_009205080.1 NC_028874_p42 hypothetical protein singleton unknown function unknown function -1 31612 31740
YP_009205073.1 NC_028874_p35 hypothetical protein phrog_754 minor tail protein tail 1 27780 28583
YP_009205107.1 NC_028874_p69 hypothetical protein phrog_520 unknown function unknown function -1 42083 42376
YP_009205092.1 NC_028874_p54 hypothetical protein phrog_1167 phosphofructokinase other -1 37557 38216
YP_009205103.1 NC_028874_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40809 41630
YP_009205047.1 NC_028874_p9 lysin A phrog_317 endolysin lysis 1 4804 6237
YP_009205094.1 NC_028874_p56 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38419 38997
YP_009205089.1 NC_028874_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36481 36621
YP_009205083.1 NC_028874_p45 hypothetical protein phrog_6173 unknown function unknown function -1 34128 34382
YP_009205066.1 NC_028874_p28 minor tail protein phrog_352 minor tail protein tail 1 22686 23132
YP_009205099.1 NC_028874_p61 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39795 40283
YP_009205046.1 NC_028874_p8 hypothetical protein phrog_747 unknown function unknown function 1 4547 4804
YP_009205121.1 NC_028874_p83 hypothetical protein phrog_1387 unknown function unknown function -1 47833 48036
YP_009205124.1 NC_028874_p86 hypothetical protein phrog_2093 unknown function unknown function -1 48385 48513
YP_009205127.1 NC_028874_p89 hypothetical protein phrog_5419 unknown function unknown function -1 49362 49619
YP_009205067.1 NC_028874_p29 minor tail protein phrog_981 minor tail protein tail 1 23129 23476
YP_009205062.1 NC_028874_p24 tapemeasure phrog_305 tail length tape measure protein tail 1 16564 18564
YP_009205096.1 NC_028874_p58 hypothetical protein phrog_1783 unknown function unknown function -1 39280 39441
YP_009205064.1 NC_028874_p26 minor tail protein phrog_1543 minor tail protein tail 1 20664 20846
YP_009205078.1 NC_028874_p40 hypothetical protein phrog_1860 unknown function unknown function -1 31251 31346
YP_009205074.1 NC_028874_p36 hypothetical protein phrog_411 unknown function unknown function 1 28704 28988
YP_009205106.1 NC_028874_p68 hypothetical protein phrog_1705 unknown function unknown function -1 41964 42086
YP_009205049.1 NC_028874_p11 terminase phrog_9 terminase large subunit head and packaging 1 7215 8903
YP_009205079.1 NC_028874_p41 hypothetical protein phrog_1971 unknown function unknown function -1 31343 31615
YP_009205054.1 NC_028874_p16 head to tail connector phrog_1857 head-tail connector protein connector 1 12892 13128
YP_009205048.1 NC_028874_p10 lysin B phrog_102 endolysin lysis 1 6227 7195
YP_009205095.1 NC_028874_p57 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38786 39301
YP_009205101.1 NC_028874_p63 hypothetical protein phrog_3647 unknown function unknown function -1 40353 40514
YP_009205050.1 NC_028874_p12 portal protein phrog_104 portal protein head and packaging 1 8900 10342
YP_009205105.1 NC_028874_p67 hypothetical protein phrog_2507 unknown function unknown function -1 41794 41967
YP_009205040.1 NC_028874_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 735 1031
YP_009205068.1 NC_028874_p30 minor tail protein phrog_1397 unknown function unknown function 1 23473 23820
YP_009205116.1 NC_028874_p78 hypothetical protein phrog_1809 unknown function unknown function -1 45888 46283
YP_009205065.1 NC_028874_p27 minor tail protein phrog_110 minor tail protein tail 1 20846 22648
YP_009205056.1 NC_028874_p18 head to tail connector phrog_320 head closure Hc1 connector 1 13577 13939
YP_009205044.1 NC_028874_p6 hypothetical protein phrog_553 minor tail protein tail 1 3580 4269
YP_009205112.1 NC_028874_p74 hypothetical protein phrog_4604 unknown function unknown function -1 44741 45202
YP_009205093.1 NC_028874_p55 hypothetical protein phrog_8843 unknown function unknown function -1 38201 38422
YP_009205115.1 NC_028874_p77 hypothetical protein phrog_1584 unknown function unknown function -1 45574 45891
YP_009205128.1 NC_028874_p90 hypothetical protein phrog_23375 unknown function unknown function -1 49691 49930
YP_009205059.1 NC_028874_p21 major tail subunit phrog_117 major tail protein tail 1 14793 15641
YP_009205114.1 NC_028874_p76 hypothetical protein phrog_5947 unknown function unknown function -1 45425 45577
YP_009205052.1 NC_028874_p14 scaffold protein phrog_233 head scaffolding protein head and packaging 1 11278 11790
YP_009205058.1 NC_028874_p20 head to tail connector phrog_123 tail terminator connector 1 14338 14784
YP_009205082.1 NC_028874_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32279 34105
YP_009205084.1 NC_028874_p46 hypothetical protein phrog_1781 unknown function unknown function -1 34379 34609
YP_009205043.1 NC_028874_p5 hypothetical protein phrog_1197 tail protein tail 1 2500 3570
YP_009205069.1 NC_028874_p31 minor tail protein phrog_346 minor tail protein tail 1 23845 25698
YP_009205053.1 NC_028874_p15 major capsid protein phrog_10 major head protein head and packaging 1 11800 12813
YP_009205051.1 NC_028874_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10339 11220
YP_009205091.1 NC_028874_p53 hypothetical protein phrog_1503 unknown function unknown function -1 37390 37560
YP_009205126.1 NC_028874_p88 hypothetical protein phrog_9026 unknown function unknown function -1 48681 48893
YP_009205070.1 NC_028874_p32 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 25691 27169
YP_009205077.1 NC_028874_p39 hypothetical protein phrog_2035 unknown function unknown function -1 31084 31263
YP_009205061.1 NC_028874_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15753 16130
YP_009205045.1 NC_028874_p7 hypothetical protein phrog_1718 tail protein tail 1 4279 4539
YP_009205113.1 NC_028874_p75 hypothetical protein phrog_6068 unknown function unknown function -1 45199 45432
YP_009205086.1 NC_028874_p48 hypothetical protein phrog_2094 unknown function unknown function -1 35161 35493
YP_009205102.1 NC_028874_p64 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 40543 40809
YP_009205120.1 NC_028874_p82 hypothetical protein phrog_1720 unknown function unknown function -1 47567 47836
YP_009205097.1 NC_028874_p59 hypothetical protein phrog_5801 unknown function unknown function -1 39438 39515
YP_009205110.1 NC_028874_p72 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42897 43700
YP_009205129.1 NC_028874_p91 hypothetical protein phrog_828 unknown function unknown function -1 50027 50227
YP_009205075.1 NC_028874_p37 integrase phrog_95 integrase integration and excision 1 29191 30693
YP_009205100.1 NC_028874_p62 hypothetical protein phrog_1019 unknown function unknown function -1 40270 40356
YP_009205071.1 NC_028874_p33 hypothetical protein phrog_644 unknown function unknown function 1 27262 27582
YP_009205076.1 NC_028874_p38 hypothetical protein phrog_1966 unknown function unknown function -1 30815 31087
YP_009205108.1 NC_028874_p70 hypothetical protein phrog_2184 unknown function unknown function -1 42373 42684
YP_009205055.1 NC_028874_p17 head to tail connector phrog_137 head-tail adaptor Ad1 connector 1 13128 13577
YP_009205072.1 NC_028874_p34 hypothetical protein phrog_1560 unknown function unknown function 1 27592 27783
YP_009205081.1 NC_028874_p43 hypothetical protein phrog_383 unknown function unknown function -1 31899 32258
YP_009205042.1 NC_028874_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1672 2091
YP_009205123.1 NC_028874_p85 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48221 48388
YP_009205109.1 NC_028874_p71 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 42688 42870
YP_009205125.1 NC_028874_p87 hypothetical protein phrog_932 unknown function unknown function -1 48535 48684
YP_009205088.1 NC_028874_p50 ECF RNA polymerase sigma factor phrog_354 sigma-K factor transcription regulation -1 35673 36488
YP_009205087.1 NC_028874_p49 hypothetical protein phrog_499 unknown function unknown function -1 35494 35676
YP_009205085.1 NC_028874_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34640 35131
YP_009205119.1 NC_028874_p81 hypothetical protein phrog_6474 recombination directionality factor integration and excision -1 47391 47570
YP_009205122.1 NC_028874_p84 hypothetical protein phrog_1155 unknown function unknown function -1 48033 48221