| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028874 |
Definition |
Mycobacterium phage Pari, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
50614 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
63.53 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009205118.1 | NC_028874_p80 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47099 | 47398 |
| YP_009205104.1 | NC_028874_p66 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 41624 | 41794 |
| YP_009205098.1 | NC_028874_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39512 | 39772 |
| YP_009205060.1 | NC_028874_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15753 | 16552 |
| YP_009205041.1 | NC_028874_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1066 | 1500 |
| YP_009205057.1 | NC_028874_p19 | head to tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13939 | 14334 |
| YP_009205111.1 | NC_028874_p73 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 43697 | 44407 |
| YP_009205039.1 | NC_028874_p1 | hypothetical protein | phrog_21009 | unknown function | unknown function | 1 | 599 | 754 |
| YP_009205090.1 | NC_028874_p52 | RDF protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36626 | 37393 |
| YP_009205063.1 | NC_028874_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18588 | 20645 |
| YP_009205117.1 | NC_028874_p79 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46325 | 46837 |
| YP_009205080.1 | NC_028874_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31612 | 31740 |
| YP_009205073.1 | NC_028874_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 27780 | 28583 |
| YP_009205107.1 | NC_028874_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42083 | 42376 |
| YP_009205092.1 | NC_028874_p54 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37557 | 38216 |
| YP_009205103.1 | NC_028874_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40809 | 41630 |
| YP_009205047.1 | NC_028874_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4804 | 6237 |
| YP_009205094.1 | NC_028874_p56 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38419 | 38997 |
| YP_009205089.1 | NC_028874_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36481 | 36621 |
| YP_009205083.1 | NC_028874_p45 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 34128 | 34382 |
| YP_009205066.1 | NC_028874_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22686 | 23132 |
| YP_009205099.1 | NC_028874_p61 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39795 | 40283 |
| YP_009205046.1 | NC_028874_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4547 | 4804 |
| YP_009205121.1 | NC_028874_p83 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47833 | 48036 |
| YP_009205124.1 | NC_028874_p86 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48385 | 48513 |
| YP_009205127.1 | NC_028874_p89 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 49362 | 49619 |
| YP_009205067.1 | NC_028874_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23129 | 23476 |
| YP_009205062.1 | NC_028874_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16564 | 18564 |
| YP_009205096.1 | NC_028874_p58 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39280 | 39441 |
| YP_009205064.1 | NC_028874_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 20664 | 20846 |
| YP_009205078.1 | NC_028874_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31251 | 31346 |
| YP_009205074.1 | NC_028874_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28704 | 28988 |
| YP_009205106.1 | NC_028874_p68 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 41964 | 42086 |
| YP_009205049.1 | NC_028874_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7215 | 8903 |
| YP_009205079.1 | NC_028874_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31343 | 31615 |
| YP_009205054.1 | NC_028874_p16 | head to tail connector | phrog_1857 | head-tail connector protein | connector | 1 | 12892 | 13128 |
| YP_009205048.1 | NC_028874_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6227 | 7195 |
| YP_009205095.1 | NC_028874_p57 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38786 | 39301 |
| YP_009205101.1 | NC_028874_p63 | hypothetical protein | phrog_3647 | unknown function | unknown function | -1 | 40353 | 40514 |
| YP_009205050.1 | NC_028874_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8900 | 10342 |
| YP_009205105.1 | NC_028874_p67 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41794 | 41967 |
| YP_009205040.1 | NC_028874_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 735 | 1031 |
| YP_009205068.1 | NC_028874_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 23473 | 23820 |
| YP_009205116.1 | NC_028874_p78 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45888 | 46283 |
| YP_009205065.1 | NC_028874_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20846 | 22648 |
| YP_009205056.1 | NC_028874_p18 | head to tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13577 | 13939 |
| YP_009205044.1 | NC_028874_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3580 | 4269 |
| YP_009205112.1 | NC_028874_p74 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 44741 | 45202 |
| YP_009205093.1 | NC_028874_p55 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 38201 | 38422 |
| YP_009205115.1 | NC_028874_p77 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45574 | 45891 |
| YP_009205128.1 | NC_028874_p90 | hypothetical protein | phrog_23375 | unknown function | unknown function | -1 | 49691 | 49930 |
| YP_009205059.1 | NC_028874_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14793 | 15641 |
| YP_009205114.1 | NC_028874_p76 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 45425 | 45577 |
| YP_009205052.1 | NC_028874_p14 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11278 | 11790 |
| YP_009205058.1 | NC_028874_p20 | head to tail connector | phrog_123 | tail terminator | connector | 1 | 14338 | 14784 |
| YP_009205082.1 | NC_028874_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32279 | 34105 |
| YP_009205084.1 | NC_028874_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34379 | 34609 |
| YP_009205043.1 | NC_028874_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2500 | 3570 |
| YP_009205069.1 | NC_028874_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 23845 | 25698 |
| YP_009205053.1 | NC_028874_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11800 | 12813 |
| YP_009205051.1 | NC_028874_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10339 | 11220 |
| YP_009205091.1 | NC_028874_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37390 | 37560 |
| YP_009205126.1 | NC_028874_p88 | hypothetical protein | phrog_9026 | unknown function | unknown function | -1 | 48681 | 48893 |
| YP_009205070.1 | NC_028874_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25691 | 27169 |
| YP_009205077.1 | NC_028874_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31084 | 31263 |
| YP_009205061.1 | NC_028874_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15753 | 16130 |
| YP_009205045.1 | NC_028874_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4279 | 4539 |
| YP_009205113.1 | NC_028874_p75 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 45199 | 45432 |
| YP_009205086.1 | NC_028874_p48 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35161 | 35493 |
| YP_009205102.1 | NC_028874_p64 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40543 | 40809 |
| YP_009205120.1 | NC_028874_p82 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47567 | 47836 |
| YP_009205097.1 | NC_028874_p59 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 39438 | 39515 |
| YP_009205110.1 | NC_028874_p72 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42897 | 43700 |
| YP_009205129.1 | NC_028874_p91 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50027 | 50227 |
| YP_009205075.1 | NC_028874_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29191 | 30693 |
| YP_009205100.1 | NC_028874_p62 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40270 | 40356 |
| YP_009205071.1 | NC_028874_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27262 | 27582 |
| YP_009205076.1 | NC_028874_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 30815 | 31087 |
| YP_009205108.1 | NC_028874_p70 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42373 | 42684 |
| YP_009205055.1 | NC_028874_p17 | head to tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13128 | 13577 |
| YP_009205072.1 | NC_028874_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27592 | 27783 |
| YP_009205081.1 | NC_028874_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 31899 | 32258 |
| YP_009205042.1 | NC_028874_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1672 | 2091 |
| YP_009205123.1 | NC_028874_p85 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48221 | 48388 |
| YP_009205109.1 | NC_028874_p71 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42688 | 42870 |
| YP_009205125.1 | NC_028874_p87 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48535 | 48684 |
| YP_009205088.1 | NC_028874_p50 | ECF RNA polymerase sigma factor | phrog_354 | sigma-K factor | transcription regulation | -1 | 35673 | 36488 |
| YP_009205087.1 | NC_028874_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35494 | 35676 |
| YP_009205085.1 | NC_028874_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34640 | 35131 |
| YP_009205119.1 | NC_028874_p81 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 47391 | 47570 |
| YP_009205122.1 | NC_028874_p84 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48033 | 48221 |