| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028878 |
Definition |
Mycobacterium phage Archie, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus. |
DB of origin |
REFSEQ |
Length |
76271 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
128 |
%GC |
58.72 |
Number of singletons |
4 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009205555.1 | NC_028878_p88 | hypothetical protein | phrog_7495 | unknown function | unknown function | 1 | 57890 | 58324 |
| YP_009205594.1 | NC_028878_p127 | hypothetical protein | phrog_16092 | unknown function | unknown function | -1 | 74646 | 74876 |
| YP_009205476.1 | NC_028878_p9 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7204 | 7668 |
| YP_009205544.1 | NC_028878_p77 | resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53141 | 53554 |
| YP_009205550.1 | NC_028878_p83 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 55510 | 55728 |
| YP_009205588.1 | NC_028878_p121 | hypothetical protein | phrog_19465 | unknown function | unknown function | -1 | 70138 | 70416 |
| YP_009205592.1 | NC_028878_p125 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 71989 | 72837 |
| YP_009205489.1 | NC_028878_p22 | hypothetical protein | phrog_4137 | unknown function | unknown function | 1 | 21406 | 21681 |
| YP_009205499.1 | NC_028878_p32 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 28911 | 29177 |
| YP_009205580.1 | NC_028878_p113 | hypothetical protein | phrog_6739 | unknown function | unknown function | -1 | 67498 | 67614 |
| YP_009205506.1 | NC_028878_p39 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33167 | 33946 |
| YP_009205525.1 | NC_028878_p58 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 43028 | 43327 |
| YP_009205589.1 | NC_028878_p122 | hypothetical protein | phrog_8547 | unknown function | unknown function | -1 | 70418 | 70552 |
| YP_009205559.1 | NC_028878_p92 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59049 | 59462 |
| YP_009205539.1 | NC_028878_p72 | phosphoribosyl pyrophosphate synthetase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 49233 | 50096 |
| YP_009205471.1 | NC_028878_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1034 | 2602 |
| YP_009205595.1 | NC_028878_p128 | hypothetical protein | phrog_7398 | unknown function | unknown function | -1 | 74956 | 75399 |
| YP_009205582.1 | NC_028878_p115 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 67777 | 68037 |
| YP_009205477.1 | NC_028878_p10 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 7665 | 8003 |
| YP_009205578.1 | NC_028878_p111 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 66226 | 66942 |
| YP_009205492.1 | NC_028878_p25 | hypothetical protein | phrog_9833 | unknown function | unknown function | 1 | 24473 | 24622 |
| YP_009205549.1 | NC_028878_p82 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 55052 | 55447 |
| YP_009205566.1 | NC_028878_p99 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 61717 | 61935 |
| YP_009205586.1 | NC_028878_p119 | hypothetical protein | phrog_7390 | unknown function | unknown function | -1 | 69581 | 69784 |
| YP_009205538.1 | NC_028878_p71 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 49099 | 49248 |
| YP_009205496.1 | NC_028878_p29 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 27765 | 28241 |
| YP_009205542.1 | NC_028878_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52593 | 52793 |
| YP_009205479.1 | NC_028878_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8444 | 8920 |
| YP_009205491.1 | NC_028878_p24 | minor tail protein | phrog_9784 | minor tail protein | tail | 1 | 22153 | 24441 |
| YP_009205537.1 | NC_028878_p70 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 48823 | 49083 |
| YP_009205569.1 | NC_028878_p102 | hypothetical protein | phrog_6800 | unknown function | unknown function | 1 | 62438 | 62614 |
| YP_009205532.1 | NC_028878_p65 | hypothetical protein | phrog_7527 | unknown function | unknown function | 1 | 45917 | 46195 |
| YP_009205584.1 | NC_028878_p117 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 68974 | 69357 |
| YP_009205497.1 | NC_028878_p30 | hypothetical protein | phrog_5807 | unknown function | unknown function | 1 | 28241 | 28495 |
| YP_009205534.1 | NC_028878_p67 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46551 | 46892 |
| YP_009205536.1 | NC_028878_p69 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47541 | 48806 |
| YP_009205570.1 | NC_028878_p103 | hypothetical protein | phrog_10206 | unknown function | unknown function | 1 | 62719 | 62853 |
| YP_009205474.1 | NC_028878_p7 | scaffolding protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5396 | 6001 |
| YP_009205522.1 | NC_028878_p55 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 40771 | 42201 |
| YP_009205557.1 | NC_028878_p90 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 58431 | 58670 |
| YP_009205473.1 | NC_028878_p6 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 4276 | 5343 |
| YP_009205481.1 | NC_028878_p14 | tail assembly chaperone | phrog_2624 | tail assembly chaperone | tail | 1 | 9934 | 10763 |
| YP_009205591.1 | NC_028878_p124 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 70829 | 71281 |
| YP_009205494.1 | NC_028878_p27 | lysin A | phrog_700 | endolysin | lysis | 1 | 25565 | 26734 |
| YP_009205561.1 | NC_028878_p94 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 59796 | 60203 |
| YP_009205509.1 | NC_028878_p42 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34898 | 35113 |
| YP_009205519.1 | NC_028878_p52 | hypothetical protein | phrog_200 | lipoprotein | other | 1 | 38816 | 39775 |
| YP_009205498.1 | NC_028878_p31 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 28498 | 28920 |
| YP_009205590.1 | NC_028878_p123 | hypothetical protein | phrog_6968 | unknown function | unknown function | -1 | 70554 | 70781 |
| YP_009205533.1 | NC_028878_p66 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46205 | 46564 |
| YP_009205551.1 | NC_028878_p84 | hypothetical protein | phrog_14246 | unknown function | unknown function | 1 | 55725 | 55796 |
| YP_009205573.1 | NC_028878_p106 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 64370 | 65074 |
| YP_009205528.1 | NC_028878_p61 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43741 | 44673 |
| YP_009205502.1 | NC_028878_p35 | nucleotidyl transferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 29869 | 30615 |
| YP_009205543.1 | NC_028878_p76 | hypothetical protein | phrog_6064 | unknown function | unknown function | 1 | 52793 | 52981 |
| YP_009205524.1 | NC_028878_p57 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42703 | 43038 |
| YP_009205510.1 | NC_028878_p43 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 35110 | 35472 |
| YP_009205530.1 | NC_028878_p63 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44968 | 45720 |
| YP_009205468.1 | NC_028878_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 96 | 428 |
| YP_009205514.1 | NC_028878_p47 | esterase | phrog_1649 | metallo-phosphoesterase | other | 1 | 36772 | 37803 |
| YP_009205511.1 | NC_028878_p44 | hypothetical protein | phrog_8707 | unknown function | unknown function | 1 | 35453 | 35563 |
| YP_009205495.1 | NC_028878_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 26734 | 27762 |
| YP_009205581.1 | NC_028878_p114 | hypothetical protein | phrog_6725 | unknown function | unknown function | -1 | 67614 | 67784 |
| YP_009205475.1 | NC_028878_p8 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 6044 | 7192 |
| YP_009205470.1 | NC_028878_p3 | hypothetical protein | phrog_6976 | unknown function | unknown function | 1 | 831 | 1034 |
| YP_009205520.1 | NC_028878_p53 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 39956 | 40405 |
| YP_009205546.1 | NC_028878_p79 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 53799 | 54203 |
| YP_009205554.1 | NC_028878_p87 | ClpP protease | phrog_94 | head maturation protease | head and packaging | 1 | 57239 | 57889 |
| YP_009205560.1 | NC_028878_p93 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 59561 | 59821 |
| YP_009205505.1 | NC_028878_p38 | integrase | phrog_1 | integrase | integration and excision | 1 | 31865 | 33166 |
| YP_009205576.1 | NC_028878_p109 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 65711 | 65851 |
| YP_009205485.1 | NC_028878_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17205 | 18938 |
| YP_009205504.1 | NC_028878_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31221 | 31358 |
| YP_009205484.1 | NC_028878_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16290 | 17204 |
| YP_009205469.1 | NC_028878_p2 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 442 | 831 |
| YP_009205563.1 | NC_028878_p96 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 60983 | 61165 |
| YP_009205564.1 | NC_028878_p97 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 61162 | 61338 |
| YP_009205553.1 | NC_028878_p86 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 57063 | 57242 |
| YP_009205521.1 | NC_028878_p54 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 40405 | 40644 |
| YP_009205478.1 | NC_028878_p11 | hypothetical protein | phrog_5775 | head-tail connector protein | connector | 1 | 8003 | 8434 |
| YP_009205472.1 | NC_028878_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2603 | 4258 |
| YP_009205577.1 | NC_028878_p110 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 65933 | 66124 |
| YP_009205545.1 | NC_028878_p78 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 53502 | 53798 |
| YP_009205571.1 | NC_028878_p104 | hypothetical protein | phrog_24455 | unknown function | unknown function | 1 | 63188 | 63526 |
| YP_009205500.1 | NC_028878_p33 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 29247 | 29591 |
| YP_009205574.1 | NC_028878_p107 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 65067 | 65417 |
| YP_009205565.1 | NC_028878_p98 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61295 | 61717 |
| YP_009205480.1 | NC_028878_p13 | major tail protein | phrog_476 | major tail protein | tail | 1 | 8948 | 9850 |
| YP_009205490.1 | NC_028878_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21766 | 22152 |
| YP_009205535.1 | NC_028878_p68 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 46864 | 47544 |
| YP_009205593.1 | NC_028878_p126 | AAA-ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 73050 | 74285 |
| YP_009205487.1 | NC_028878_p20 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 19444 | 21240 |
| YP_009205567.1 | NC_028878_p100 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 61928 | 62047 |
| YP_009205558.1 | NC_028878_p91 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 58663 | 59001 |
| YP_009205579.1 | NC_028878_p112 | hypothetical protein | phrog_14583 | unknown function | unknown function | -1 | 66975 | 67505 |
| YP_009205508.1 | NC_028878_p41 | helix-turn-helix DNA binding domain protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34671 | 34901 |
| YP_009205552.1 | NC_028878_p85 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55793 | 57079 |
| YP_009205529.1 | NC_028878_p62 | hypothetical protein | phrog_1123 | unknown function | unknown function | 1 | 44654 | 44971 |
| YP_009205517.1 | NC_028878_p50 | hypothetical protein | phrog_7316 | unknown function | unknown function | 1 | 38398 | 38559 |
| YP_009205527.1 | NC_028878_p60 | hypothetical protein | phrog_7425 | unknown function | unknown function | 1 | 43499 | 43699 |
| YP_009205540.1 | NC_028878_p73 | nicotinate ribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 50093 | 51577 |
| YP_009205531.1 | NC_028878_p64 | hypothetical protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45720 | 45920 |
| YP_009205483.1 | NC_028878_p16 | tape measure protein | phrog_3547 | tail length tape measure protein | tail | 1 | 10805 | 16201 |
| YP_009205562.1 | NC_028878_p95 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60200 | 60982 |
| YP_009205488.1 | NC_028878_p21 | hypothetical protein | phrog_9672 | minor tail protein | tail | 1 | 21246 | 21416 |
| YP_009205572.1 | NC_028878_p105 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63523 | 63747 |
| YP_009205523.1 | NC_028878_p56 | hypothetical protein | phrog_4670 | unknown function | unknown function | 1 | 42579 | 42710 |
| YP_009205515.1 | NC_028878_p48 | hypothetical protein | phrog_9705 | unknown function | unknown function | 1 | 37787 | 38119 |
| YP_009205526.1 | NC_028878_p59 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 43324 | 43512 |
| YP_009205575.1 | NC_028878_p108 | hypothetical protein | phrog_10010 | unknown function | unknown function | -1 | 65571 | 65714 |
| YP_009205548.1 | NC_028878_p81 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54499 | 55065 |
| YP_009205516.1 | NC_028878_p49 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 38106 | 38423 |
| YP_009205518.1 | NC_028878_p51 | hypothetical protein | phrog_9674 | unknown function | unknown function | 1 | 38597 | 38725 |
| YP_009205486.1 | NC_028878_p19 | minor tail protein | phrog_4413 | minor tail protein | tail | 1 | 18963 | 19460 |
| YP_009205507.1 | NC_028878_p40 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34096 | 34485 |
| YP_009205585.1 | NC_028878_p118 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 69382 | 69615 |
| YP_009205513.1 | NC_028878_p46 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 36423 | 36779 |
| YP_009205587.1 | NC_028878_p120 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 69862 | 70125 |
| YP_009205541.1 | NC_028878_p74 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 51665 | 52591 |
| YP_009205547.1 | NC_028878_p80 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 54193 | 54423 |
| YP_009205512.1 | NC_028878_p45 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35560 | 35976 |
| YP_009205583.1 | NC_028878_p116 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 68048 | 68899 |
| YP_009205556.1 | NC_028878_p89 | hypothetical protein | phrog_7890 | unknown function | unknown function | 1 | 58324 | 58434 |
| YP_009205493.1 | NC_028878_p26 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 24623 | 25564 |
| YP_009205568.1 | NC_028878_p101 | hypothetical protein | phrog_14116 | unknown function | unknown function | 1 | 62137 | 62454 |
| YP_009205482.1 | NC_028878_p15 | tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 9934 | 10239 |
| YP_009205501.1 | NC_028878_p34 | hypothetical protein | phrog_9776 | unknown function | unknown function | -1 | 29588 | 29902 |
| YP_009205503.1 | NC_028878_p36 | hypothetical protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 30699 | 31163 |