Genomic map of Mycobacterium phage Archie (NC_028878)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028878
Definition
Mycobacterium phage Archie, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus.
DB of origin
REFSEQ
Length
76271
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
128
%GC
58.72
Number of singletons
4
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009205555.1 NC_028878_p88 hypothetical protein phrog_7495 unknown function unknown function 1 57890 58324
YP_009205594.1 NC_028878_p127 hypothetical protein phrog_16092 unknown function unknown function -1 74646 74876
YP_009205476.1 NC_028878_p9 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 7204 7668
YP_009205544.1 NC_028878_p77 resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 53141 53554
YP_009205550.1 NC_028878_p83 hypothetical protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 55510 55728
YP_009205588.1 NC_028878_p121 hypothetical protein phrog_19465 unknown function unknown function -1 70138 70416
YP_009205592.1 NC_028878_p125 hypothetical protein phrog_1909 unknown function unknown function -1 71989 72837
YP_009205489.1 NC_028878_p22 hypothetical protein phrog_4137 unknown function unknown function 1 21406 21681
YP_009205499.1 NC_028878_p32 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 28911 29177
YP_009205580.1 NC_028878_p113 hypothetical protein phrog_6739 unknown function unknown function -1 67498 67614
YP_009205506.1 NC_028878_p39 hypothetical protein phrog_950 unknown function unknown function -1 33167 33946
YP_009205525.1 NC_028878_p58 hypothetical protein phrog_5872 unknown function unknown function 1 43028 43327
YP_009205589.1 NC_028878_p122 hypothetical protein phrog_8547 unknown function unknown function -1 70418 70552
YP_009205559.1 NC_028878_p92 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 59049 59462
YP_009205539.1 NC_028878_p72 phosphoribosyl pyrophosphate synthetase phrog_619 ribose-phosphate pyrophosphokinase other 1 49233 50096
YP_009205471.1 NC_028878_p4 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1034 2602
YP_009205595.1 NC_028878_p128 hypothetical protein phrog_7398 unknown function unknown function -1 74956 75399
YP_009205582.1 NC_028878_p115 hypothetical protein phrog_6230 unknown function unknown function -1 67777 68037
YP_009205477.1 NC_028878_p10 hypothetical protein phrog_5309 head-tail adaptor connector 1 7665 8003
YP_009205578.1 NC_028878_p111 hypothetical protein phrog_4776 unknown function unknown function -1 66226 66942
YP_009205492.1 NC_028878_p25 hypothetical protein phrog_9833 unknown function unknown function 1 24473 24622
YP_009205549.1 NC_028878_p82 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 55052 55447
YP_009205566.1 NC_028878_p99 hypothetical protein phrog_3699 unknown function unknown function 1 61717 61935
YP_009205586.1 NC_028878_p119 hypothetical protein phrog_7390 unknown function unknown function -1 69581 69784
YP_009205538.1 NC_028878_p71 hypothetical protein phrog_6206 unknown function unknown function 1 49099 49248
YP_009205496.1 NC_028878_p29 hypothetical protein phrog_5963 holin lysis 1 27765 28241
YP_009205542.1 NC_028878_p75 hypothetical protein singleton unknown function unknown function 1 52593 52793
YP_009205479.1 NC_028878_p12 hypothetical protein phrog_123 tail terminator connector 1 8444 8920
YP_009205491.1 NC_028878_p24 minor tail protein phrog_9784 minor tail protein tail 1 22153 24441
YP_009205537.1 NC_028878_p70 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 48823 49083
YP_009205569.1 NC_028878_p102 hypothetical protein phrog_6800 unknown function unknown function 1 62438 62614
YP_009205532.1 NC_028878_p65 hypothetical protein phrog_7527 unknown function unknown function 1 45917 46195
YP_009205584.1 NC_028878_p117 hypothetical protein phrog_3777 unknown function unknown function -1 68974 69357
YP_009205497.1 NC_028878_p30 hypothetical protein phrog_5807 unknown function unknown function 1 28241 28495
YP_009205534.1 NC_028878_p67 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 46551 46892
YP_009205536.1 NC_028878_p69 dsDNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 47541 48806
YP_009205570.1 NC_028878_p103 hypothetical protein phrog_10206 unknown function unknown function 1 62719 62853
YP_009205474.1 NC_028878_p7 scaffolding protein phrog_3760 head scaffolding protein head and packaging 1 5396 6001
YP_009205522.1 NC_028878_p55 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 40771 42201
YP_009205557.1 NC_028878_p90 hypothetical protein phrog_2218 unknown function unknown function 1 58431 58670
YP_009205473.1 NC_028878_p6 hypothetical protein phrog_193 head maturation protease head and packaging 1 4276 5343
YP_009205481.1 NC_028878_p14 tail assembly chaperone phrog_2624 tail assembly chaperone tail 1 9934 10763
YP_009205591.1 NC_028878_p124 hypothetical protein phrog_6176 unknown function unknown function 1 70829 71281
YP_009205494.1 NC_028878_p27 lysin A phrog_700 endolysin lysis 1 25565 26734
YP_009205561.1 NC_028878_p94 hypothetical protein phrog_4472 nucleotide kinase other 1 59796 60203
YP_009205509.1 NC_028878_p42 excise phrog_66 excisionase and transcriptional regulator integration and excision 1 34898 35113
YP_009205519.1 NC_028878_p52 hypothetical protein phrog_200 lipoprotein other 1 38816 39775
YP_009205498.1 NC_028878_p31 hypothetical protein phrog_726 unknown function unknown function 1 28498 28920
YP_009205590.1 NC_028878_p123 hypothetical protein phrog_6968 unknown function unknown function -1 70554 70781
YP_009205533.1 NC_028878_p66 hypothetical protein phrog_1389 unknown function unknown function 1 46205 46564
YP_009205551.1 NC_028878_p84 hypothetical protein phrog_14246 unknown function unknown function 1 55725 55796
YP_009205573.1 NC_028878_p106 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 64370 65074
YP_009205528.1 NC_028878_p61 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 43741 44673
YP_009205502.1 NC_028878_p35 nucleotidyl transferase phrog_388 nucleotidyltransferase DNA, RNA and nucleotide metabolism -1 29869 30615
YP_009205543.1 NC_028878_p76 hypothetical protein phrog_6064 unknown function unknown function 1 52793 52981
YP_009205524.1 NC_028878_p57 hypothetical protein phrog_301 secreted protein other 1 42703 43038
YP_009205510.1 NC_028878_p43 hypothetical protein phrog_762 unknown function unknown function 1 35110 35472
YP_009205530.1 NC_028878_p63 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 44968 45720
YP_009205468.1 NC_028878_p1 hypothetical protein singleton unknown function unknown function 1 96 428
YP_009205514.1 NC_028878_p47 esterase phrog_1649 metallo-phosphoesterase other 1 36772 37803
YP_009205511.1 NC_028878_p44 hypothetical protein phrog_8707 unknown function unknown function 1 35453 35563
YP_009205495.1 NC_028878_p28 lysin B phrog_102 endolysin lysis 1 26734 27762
YP_009205581.1 NC_028878_p114 hypothetical protein phrog_6725 unknown function unknown function -1 67614 67784
YP_009205475.1 NC_028878_p8 major capsid protein phrog_283 major head protein head and packaging 1 6044 7192
YP_009205470.1 NC_028878_p3 hypothetical protein phrog_6976 unknown function unknown function 1 831 1034
YP_009205520.1 NC_028878_p53 hypothetical protein phrog_4870 unknown function unknown function 1 39956 40405
YP_009205546.1 NC_028878_p79 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation 1 53799 54203
YP_009205554.1 NC_028878_p87 ClpP protease phrog_94 head maturation protease head and packaging 1 57239 57889
YP_009205560.1 NC_028878_p93 hypothetical protein phrog_1042 unknown function unknown function 1 59561 59821
YP_009205505.1 NC_028878_p38 integrase phrog_1 integrase integration and excision 1 31865 33166
YP_009205576.1 NC_028878_p109 hypothetical protein phrog_2124 unknown function unknown function -1 65711 65851
YP_009205485.1 NC_028878_p18 minor tail protein phrog_110 minor tail protein tail 1 17205 18938
YP_009205504.1 NC_028878_p37 hypothetical protein singleton unknown function unknown function -1 31221 31358
YP_009205484.1 NC_028878_p17 minor tail protein phrog_106 minor tail protein tail 1 16290 17204
YP_009205469.1 NC_028878_p2 terminase small subunit phrog_1496 terminase small subunit head and packaging 1 442 831
YP_009205563.1 NC_028878_p96 hypothetical protein phrog_397 unknown function unknown function 1 60983 61165
YP_009205564.1 NC_028878_p97 hypothetical protein phrog_2057 unknown function unknown function 1 61162 61338
YP_009205553.1 NC_028878_p86 hypothetical protein phrog_3641 unknown function unknown function 1 57063 57242
YP_009205521.1 NC_028878_p54 hypothetical protein phrog_2380 unknown function unknown function 1 40405 40644
YP_009205478.1 NC_028878_p11 hypothetical protein phrog_5775 head-tail connector protein connector 1 8003 8434
YP_009205472.1 NC_028878_p5 portal protein phrog_104 portal protein head and packaging 1 2603 4258
YP_009205577.1 NC_028878_p110 hypothetical protein phrog_2869 unknown function unknown function -1 65933 66124
YP_009205545.1 NC_028878_p78 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation 1 53502 53798
YP_009205571.1 NC_028878_p104 hypothetical protein phrog_24455 unknown function unknown function 1 63188 63526
YP_009205500.1 NC_028878_p33 hypothetical protein phrog_6558 unknown function unknown function -1 29247 29591
YP_009205574.1 NC_028878_p107 hypothetical protein phrog_6170 unknown function unknown function 1 65067 65417
YP_009205565.1 NC_028878_p98 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61295 61717
YP_009205480.1 NC_028878_p13 major tail protein phrog_476 major tail protein tail 1 8948 9850
YP_009205490.1 NC_028878_p23 hypothetical protein phrog_240 head protein head and packaging 1 21766 22152
YP_009205535.1 NC_028878_p68 hypothetical protein phrog_1882 unknown function unknown function 1 46864 47544
YP_009205593.1 NC_028878_p126 AAA-ATPase phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover -1 73050 74285
YP_009205487.1 NC_028878_p20 minor tail protein phrog_2689 minor tail protein tail 1 19444 21240
YP_009205567.1 NC_028878_p100 hypothetical protein phrog_6027 unknown function unknown function 1 61928 62047
YP_009205558.1 NC_028878_p91 hypothetical protein phrog_1969 unknown function unknown function 1 58663 59001
YP_009205579.1 NC_028878_p112 hypothetical protein phrog_14583 unknown function unknown function -1 66975 67505
YP_009205508.1 NC_028878_p41 helix-turn-helix DNA binding domain protein phrog_1702 transcriptional repressor transcription regulation 1 34671 34901
YP_009205552.1 NC_028878_p85 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 55793 57079
YP_009205529.1 NC_028878_p62 hypothetical protein phrog_1123 unknown function unknown function 1 44654 44971
YP_009205517.1 NC_028878_p50 hypothetical protein phrog_7316 unknown function unknown function 1 38398 38559
YP_009205527.1 NC_028878_p60 hypothetical protein phrog_7425 unknown function unknown function 1 43499 43699
YP_009205540.1 NC_028878_p73 nicotinate ribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 50093 51577
YP_009205531.1 NC_028878_p64 hypothetical protein phrog_5917 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 45720 45920
YP_009205483.1 NC_028878_p16 tape measure protein phrog_3547 tail length tape measure protein tail 1 10805 16201
YP_009205562.1 NC_028878_p95 DNA polymerase III subunit phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 60200 60982
YP_009205488.1 NC_028878_p21 hypothetical protein phrog_9672 minor tail protein tail 1 21246 21416
YP_009205572.1 NC_028878_p105 hypothetical protein singleton unknown function unknown function 1 63523 63747
YP_009205523.1 NC_028878_p56 hypothetical protein phrog_4670 unknown function unknown function 1 42579 42710
YP_009205515.1 NC_028878_p48 hypothetical protein phrog_9705 unknown function unknown function 1 37787 38119
YP_009205526.1 NC_028878_p59 hypothetical protein phrog_5858 unknown function unknown function 1 43324 43512
YP_009205575.1 NC_028878_p108 hypothetical protein phrog_10010 unknown function unknown function -1 65571 65714
YP_009205548.1 NC_028878_p81 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 54499 55065
YP_009205516.1 NC_028878_p49 hypothetical protein phrog_6017 unknown function unknown function 1 38106 38423
YP_009205518.1 NC_028878_p51 hypothetical protein phrog_9674 unknown function unknown function 1 38597 38725
YP_009205486.1 NC_028878_p19 minor tail protein phrog_4413 minor tail protein tail 1 18963 19460
YP_009205507.1 NC_028878_p40 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 34096 34485
YP_009205585.1 NC_028878_p118 hypothetical protein phrog_6224 unknown function unknown function -1 69382 69615
YP_009205513.1 NC_028878_p46 hypothetical protein phrog_5916 unknown function unknown function 1 36423 36779
YP_009205587.1 NC_028878_p120 hypothetical protein phrog_6004 unknown function unknown function -1 69862 70125
YP_009205541.1 NC_028878_p74 polynucleotide kinase phrog_505 polynucleotide kinase other 1 51665 52591
YP_009205547.1 NC_028878_p80 hypothetical protein phrog_1941 unknown function unknown function 1 54193 54423
YP_009205512.1 NC_028878_p45 hypothetical protein phrog_572 unknown function unknown function 1 35560 35976
YP_009205583.1 NC_028878_p116 hypothetical protein phrog_1909 unknown function unknown function -1 68048 68899
YP_009205556.1 NC_028878_p89 hypothetical protein phrog_7890 unknown function unknown function 1 58324 58434
YP_009205493.1 NC_028878_p26 hypothetical protein phrog_3856 minor tail protein tail 1 24623 25564
YP_009205568.1 NC_028878_p101 hypothetical protein phrog_14116 unknown function unknown function 1 62137 62454
YP_009205482.1 NC_028878_p15 tail assembly chaperone phrog_4464 tail assembly chaperone tail 1 9934 10239
YP_009205501.1 NC_028878_p34 hypothetical protein phrog_9776 unknown function unknown function -1 29588 29902
YP_009205503.1 NC_028878_p36 hypothetical protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 30699 31163