Genomic map of Pseudomonas phage PaMx42 (NC_028879)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028879
Definition
Pseudomonas phage PaMx42, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus.
DB of origin
REFSEQ
Length
43225
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
54.63
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009205623.1 NC_028879_p28 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 26056 27195
YP_009205639.1 NC_028879_p44 hypothetical protein phrog_11401 unknown function unknown function 1 38563 38919
YP_009205645.1 NC_028879_p50 hypothetical protein phrog_14000 unknown function unknown function 1 40386 40691
YP_009205609.1 NC_028879_p14 virion structural protein phrog_477 head-tail adaptor Ad1 connector 1 9134 9652
YP_009205613.1 NC_028879_p18 virion structural protein phrog_313 Tail assembly chaperone tail 1 12106 12534
YP_009205606.1 NC_028879_p11 major head protein phrog_247 major head protein head and packaging 1 7193 8167
YP_009205598.1 NC_028879_p3 endolysin phrog_7 endolysin lysis 1 599 1159
YP_009205638.1 NC_028879_p43 hypothetical protein phrog_10560 unknown function unknown function 1 38248 38490
YP_009205621.1 NC_028879_p26 virion structural protein phrog_1101 tail protein tail 1 21549 23975
YP_009205611.1 NC_028879_p16 tail terminator protein phrog_179 tail terminator connector 1 10033 10488
YP_009205620.1 NC_028879_p25 virion structural protein phrog_778 tail assembly protein tail 1 20717 21547
YP_009205603.1 NC_028879_p8 portal protein phrog_145 portal protein head and packaging 1 3821 5335
YP_009205634.1 NC_028879_p39 hypothetical protein singleton unknown function unknown function 1 36409 36606
YP_009205642.1 NC_028879_p47 hypothetical protein phrog_9844 unknown function unknown function 1 39727 39960
YP_009205614.1 NC_028879_p19 hypothetical protein phrog_3817 tail chaperonin tail 1 12597 12899
YP_009205644.1 NC_028879_p49 hypothetical protein phrog_13844 unknown function unknown function 1 40156 40329
YP_009205643.1 NC_028879_p48 hypothetical protein phrog_8564 unknown function unknown function 1 39960 40166
YP_009205647.1 NC_028879_p52 hypothetical protein singleton unknown function unknown function 1 41068 41301
YP_009205631.1 NC_028879_p36 hypothetical protein singleton unknown function unknown function 1 33351 33722
YP_009205626.1 NC_028879_p31 hypothetical protein phrog_1934 unknown function unknown function -1 29857 30402
YP_009205627.1 NC_028879_p32 hypothetical protein phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 30452 31195
YP_009205624.1 NC_028879_p29 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 27200 28855
YP_009205622.1 NC_028879_p27 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 23972 26044
YP_009205610.1 NC_028879_p15 virion structural protein phrog_161 head closure Hc1 connector 1 9656 10036
YP_009205600.1 NC_028879_p5 Rz1 protein phrog_1275 Rz-like spanin lysis 1 1388 1669
YP_009205618.1 NC_028879_p23 virion structural protein phrog_687 structural protein head and packaging 1 18098 19006
YP_009205616.1 NC_028879_p21 tail tape measure protein phrog_3336 tail length tape measure protein tail 1 13309 17136
YP_009205612.1 NC_028879_p17 major tail structural protein phrog_290 minor tail protein tail 1 10502 12043
YP_009205619.1 NC_028879_p24 virion structural protein phrog_1082 tail assembly protein tail 1 19010 20716
YP_009205650.1 NC_028879_p55 hypothetical protein phrog_6168 unknown function unknown function 1 42199 42408
YP_009205601.1 NC_028879_p6 terminase small subunit phrog_5334 terminase small subunit head and packaging 1 1725 2213
YP_009205637.1 NC_028879_p42 hypothetical protein phrog_10287 unknown function unknown function 1 37834 38106
YP_009205635.1 NC_028879_p40 hypothetical protein singleton unknown function unknown function 1 36675 37175
YP_009205596.1 NC_028879_p1 hypothetical protein singleton unknown function unknown function 1 38 352
YP_009205597.1 NC_028879_p2 holin phrog_1356 holin lysis 1 352 642
YP_009205602.1 NC_028879_p7 terminase large subunit phrog_2 terminase large subunit head and packaging 1 2194 3807
YP_009205607.1 NC_028879_p12 hypothetical protein phrog_9062 unknown function unknown function 1 8236 8664
YP_009205636.1 NC_028879_p41 hypothetical protein phrog_3988 unknown function unknown function 1 37192 37455
YP_009205615.1 NC_028879_p20 virion structural protein phrog_169 tail completion or Neck1 protein connector 1 12868 13302
YP_009205599.1 NC_028879_p4 Rz protein phrog_1026 Rz-like spanin lysis 1 1159 1473
YP_009205625.1 NC_028879_p30 RecB exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 28848 29951
YP_009205651.1 NC_028879_p56 hypothetical protein phrog_7597 unknown function unknown function 1 42493 43068
YP_009205649.1 NC_028879_p54 hypothetical protein phrog_9241 unknown function unknown function 1 41780 42154
YP_009205646.1 NC_028879_p51 hypothetical protein singleton unknown function unknown function 1 40705 41004
YP_009205648.1 NC_028879_p53 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 41298 41774
YP_009205604.1 NC_028879_p9 morphogenesis protein phrog_241 head morphogenesis head and packaging 1 5338 6432
YP_009205641.1 NC_028879_p46 hypothetical protein phrog_824 unknown function unknown function 1 39194 39730
YP_009205632.1 NC_028879_p37 primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism 1 33725 36040
YP_009205605.1 NC_028879_p10 scaffold protein phrog_206 head scaffolding protein head and packaging 1 6470 7180
YP_009205628.1 NC_028879_p33 RecA ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31334 32050
YP_009205617.1 NC_028879_p22 virion structural protein phrog_687 structural protein head and packaging 1 17136 18098
YP_009205630.1 NC_028879_p35 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other -1 32788 33351
YP_009205608.1 NC_028879_p13 virion structural protein phrog_10405 virion structural protein head and packaging 1 8747 9121
YP_009205629.1 NC_028879_p34 hypothetical protein phrog_2480 unknown function unknown function -1 32203 32712
YP_009205633.1 NC_028879_p38 hypothetical protein phrog_25386 unknown function unknown function 1 36212 36412
YP_009205640.1 NC_028879_p45 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 38976 39197