Genomic map of Citrobacter phage phiCFP-1 (NC_028880)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028880
Definition
Citrobacter phage phiCFP-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Citrobacter virus CFP1.
DB of origin
REFSEQ
Length
38625
Host Name
Citrobacter freundii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
43
%GC
50.27
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009205693.1 NC_028880_p42 hypothetical protein phrog_1327 Rz-like spanin lysis 1 35383 35847
YP_009205657.1 NC_028880_p6 hypothetical protein phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3558 6212
YP_009205687.1 NC_028880_p36 internal virion protein B phrog_805 internal virion protein head and packaging 1 25950 26534
YP_009205672.1 NC_028880_p21 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 15741 16040
YP_009205655.1 NC_028880_p4 hypothetical protein singleton unknown function unknown function 1 2128 2370
YP_009205656.1 NC_028880_p5 protein kinase phrog_2828 serine-threonine kinase other 1 2539 3384
YP_009205685.1 NC_028880_p34 tail tubular protein B phrog_457 tail protein tail 1 23050 25455
YP_009205660.1 NC_028880_p9 hypothetical protein phrog_2949 dGTPase inhibitor; target for F exclusion other 1 6804 7079
YP_009205676.1 NC_028880_p25 hypothetical protein phrog_5008 unknown function unknown function 1 17318 17431
YP_009205665.1 NC_028880_p14 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9444 10142
YP_009205659.1 NC_028880_p8 hypothetical protein phrog_2490 unknown function unknown function 1 6664 6804
YP_009205692.1 NC_028880_p41 hypothetical protein phrog_1351 terminase small subunit head and packaging 1 35039 35305
YP_009205673.1 NC_028880_p22 hypothetical protein phrog_1334 unknown function unknown function 1 16040 16249
YP_009205678.1 NC_028880_p27 hypothetical protein phrog_1391 unknown function unknown function 1 17774 18025
YP_009205679.1 NC_028880_p28 host specificity protein B phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18053 18373
YP_009205680.1 NC_028880_p29 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 18384 19991
YP_009205667.1 NC_028880_p16 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 10596 11051
YP_009205674.1 NC_028880_p23 hypothetical protein phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 16246 16428
YP_009205652.1 NC_028880_p1 hypothetical protein phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 815 1219
YP_009205654.1 NC_028880_p3 hypothetical protein phrog_9817 unknown function unknown function 1 1441 1725
YP_009205675.1 NC_028880_p24 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16425 17336
YP_009205658.1 NC_028880_p7 hypothetical protein phrog_6379 unknown function unknown function 1 6299 6571
YP_009205663.1 NC_028880_p12 hypothetical protein phrog_4943 unknown function unknown function 1 8616 9107
YP_009205690.1 NC_028880_p39 tail fiber protein phrog_9502 tail fiber protein tail 1 32819 34783
YP_009205686.1 NC_028880_p35 hypothetical protein phrog_308 internal virion protein head and packaging 1 25528 25938
YP_009205688.1 NC_028880_p37 internal virion protein C phrog_1339 internal virion protein head and packaging 1 26537 28780
YP_009205684.1 NC_028880_p33 tail tubular protein A phrog_446 tail protein tail 1 22444 23034
YP_009205664.1 NC_028880_p13 hypothetical protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9104 9391
YP_009205661.1 NC_028880_p10 hypothetical protein phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7159 8190
YP_009205683.1 NC_028880_p32 hypothetical protein phrog_20538 head protein head and packaging 1 22246 22362
YP_009205662.1 NC_028880_p11 hypothetical protein phrog_1777 unknown function unknown function 1 8359 8616
YP_009205653.1 NC_028880_p2 hypothetical protein phrog_7202 unknown function unknown function 1 1219 1371
YP_009205669.1 NC_028880_p18 hypothetical protein phrog_1950 unknown function unknown function 1 13030 13242
YP_009205668.1 NC_028880_p17 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11231 12931
YP_009205682.1 NC_028880_p31 major capsid protein 10A phrog_267 major head protein head and packaging 1 21182 22228
YP_009205677.1 NC_028880_p26 hypothetical protein phrog_1447 unknown function unknown function 1 17524 17769
YP_009205666.1 NC_028880_p15 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10142 10603
YP_009205691.1 NC_028880_p40 lysis protein phrog_920 holin lysis 1 34832 35035
YP_009205689.1 NC_028880_p38 hypothetical protein phrog_342 internal virion protein with endolysin domain head and packaging 1 28803 32771
YP_009205694.1 NC_028880_p43 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 35822 37585
YP_009205681.1 NC_028880_p30 hypothetical protein phrog_1052 head assembly head and packaging 1 20093 21025
YP_009205670.1 NC_028880_p19 hypothetical protein phrog_2254 unknown function unknown function 1 13255 13539
YP_009205671.1 NC_028880_p20 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13607 15721