| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028880 |
Definition |
Citrobacter phage phiCFP-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Citrobacter virus CFP1. |
DB of origin |
REFSEQ |
Length |
38625 |
Host Name |
Citrobacter freundii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
43 |
%GC |
50.27 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009205693.1 | NC_028880_p42 | hypothetical protein | phrog_1327 | Rz-like spanin | lysis | 1 | 35383 | 35847 |
| YP_009205657.1 | NC_028880_p6 | hypothetical protein | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3558 | 6212 |
| YP_009205687.1 | NC_028880_p36 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 25950 | 26534 |
| YP_009205672.1 | NC_028880_p21 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15741 | 16040 |
| YP_009205655.1 | NC_028880_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2128 | 2370 |
| YP_009205656.1 | NC_028880_p5 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2539 | 3384 |
| YP_009205685.1 | NC_028880_p34 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23050 | 25455 |
| YP_009205660.1 | NC_028880_p9 | hypothetical protein | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6804 | 7079 |
| YP_009205676.1 | NC_028880_p25 | hypothetical protein | phrog_5008 | unknown function | unknown function | 1 | 17318 | 17431 |
| YP_009205665.1 | NC_028880_p14 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9444 | 10142 |
| YP_009205659.1 | NC_028880_p8 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6664 | 6804 |
| YP_009205692.1 | NC_028880_p41 | hypothetical protein | phrog_1351 | terminase small subunit | head and packaging | 1 | 35039 | 35305 |
| YP_009205673.1 | NC_028880_p22 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 16040 | 16249 |
| YP_009205678.1 | NC_028880_p27 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17774 | 18025 |
| YP_009205679.1 | NC_028880_p28 | host specificity protein B | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18053 | 18373 |
| YP_009205680.1 | NC_028880_p29 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18384 | 19991 |
| YP_009205667.1 | NC_028880_p16 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 10596 | 11051 |
| YP_009205674.1 | NC_028880_p23 | hypothetical protein | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 16246 | 16428 |
| YP_009205652.1 | NC_028880_p1 | hypothetical protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 815 | 1219 |
| YP_009205654.1 | NC_028880_p3 | hypothetical protein | phrog_9817 | unknown function | unknown function | 1 | 1441 | 1725 |
| YP_009205675.1 | NC_028880_p24 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16425 | 17336 |
| YP_009205658.1 | NC_028880_p7 | hypothetical protein | phrog_6379 | unknown function | unknown function | 1 | 6299 | 6571 |
| YP_009205663.1 | NC_028880_p12 | hypothetical protein | phrog_4943 | unknown function | unknown function | 1 | 8616 | 9107 |
| YP_009205690.1 | NC_028880_p39 | tail fiber protein | phrog_9502 | tail fiber protein | tail | 1 | 32819 | 34783 |
| YP_009205686.1 | NC_028880_p35 | hypothetical protein | phrog_308 | internal virion protein | head and packaging | 1 | 25528 | 25938 |
| YP_009205688.1 | NC_028880_p37 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 26537 | 28780 |
| YP_009205684.1 | NC_028880_p33 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22444 | 23034 |
| YP_009205664.1 | NC_028880_p13 | hypothetical protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9104 | 9391 |
| YP_009205661.1 | NC_028880_p10 | hypothetical protein | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7159 | 8190 |
| YP_009205683.1 | NC_028880_p32 | hypothetical protein | phrog_20538 | head protein | head and packaging | 1 | 22246 | 22362 |
| YP_009205662.1 | NC_028880_p11 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8359 | 8616 |
| YP_009205653.1 | NC_028880_p2 | hypothetical protein | phrog_7202 | unknown function | unknown function | 1 | 1219 | 1371 |
| YP_009205669.1 | NC_028880_p18 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13030 | 13242 |
| YP_009205668.1 | NC_028880_p17 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11231 | 12931 |
| YP_009205682.1 | NC_028880_p31 | major capsid protein 10A | phrog_267 | major head protein | head and packaging | 1 | 21182 | 22228 |
| YP_009205677.1 | NC_028880_p26 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17524 | 17769 |
| YP_009205666.1 | NC_028880_p15 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10142 | 10603 |
| YP_009205691.1 | NC_028880_p40 | lysis protein | phrog_920 | holin | lysis | 1 | 34832 | 35035 |
| YP_009205689.1 | NC_028880_p38 | hypothetical protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 28803 | 32771 |
| YP_009205694.1 | NC_028880_p43 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 35822 | 37585 |
| YP_009205681.1 | NC_028880_p30 | hypothetical protein | phrog_1052 | head assembly | head and packaging | 1 | 20093 | 21025 |
| YP_009205670.1 | NC_028880_p19 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13255 | 13539 |
| YP_009205671.1 | NC_028880_p20 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13607 | 15721 |