functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_028882 |
Definition |
Pseudomonas phage vB_PaeM_PS24, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Nankokuvirus; Pseudomonas virus PS24. |
DB of origin |
REFSEQ |
Length |
84583 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
153 |
%GC |
54.7 |
Number of singletons |
3 |
Number of paralogs |
9 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_009206104.1 | NC_028882_p139 | hypothetical protein | phrog_12054 | unknown function | unknown function | 1 | 78757 | 79035 |
YP_009206022.1 | NC_028882_p57 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 32156 | 32623 |
YP_009206118.1 | NC_028882_p153 | hypothetical protein | phrog_4686 | unknown function | unknown function | 1 | 84090 | 84254 |
YP_009206092.1 | NC_028882_p127 | hypothetical protein | phrog_11927 | unknown function | unknown function | 1 | 74356 | 74568 |
YP_009206024.1 | NC_028882_p59 | hypothetical protein | phrog_4087 | unknown function | unknown function | 1 | 32994 | 33614 |
YP_009205984.1 | NC_028882_p19 | hypothetical protein | phrog_7635 | unknown function | unknown function | 1 | 10175 | 10432 |
YP_009206007.1 | NC_028882_p42 | hypothetical protein | phrog_3948 | unknown function | unknown function | -1 | 20876 | 21142 |
YP_009206107.1 | NC_028882_p142 | hypothetical protein | phrog_15160 | unknown function | unknown function | 1 | 80037 | 80504 |
YP_009206012.1 | NC_028882_p47 | hypothetical protein | phrog_11136 | unknown function | unknown function | 1 | 23479 | 23781 |
YP_009206115.1 | NC_028882_p150 | hypothetical protein | singleton | unknown function | unknown function | 1 | 83201 | 83506 |
YP_009205991.1 | NC_028882_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12225 | 12536 |
YP_009206085.1 | NC_028882_p120 | hypothetical protein | phrog_10949 | unknown function | unknown function | 1 | 71663 | 71905 |
YP_009206110.1 | NC_028882_p145 | hypothetical protein | phrog_32070 | unknown function | unknown function | 1 | 81527 | 81985 |
YP_009206032.1 | NC_028882_p67 | hypothetical protein | phrog_817 | tail fiber protein | tail | 1 | 39495 | 40262 |
YP_009205974.1 | NC_028882_p9 | hypothetical protein | phrog_10655 | unknown function | unknown function | 1 | 4738 | 5106 |
YP_009205986.1 | NC_028882_p21 | hypothetical protein | phrog_20444 | unknown function | unknown function | 1 | 10562 | 10930 |
YP_009206060.1 | NC_028882_p95 | hypothetical protein | phrog_11998 | unknown function | unknown function | 1 | 55012 | 55278 |
YP_009206005.1 | NC_028882_p40 | hypothetical protein | phrog_5276 | unknown function | unknown function | -1 | 19741 | 20013 |
YP_009205989.1 | NC_028882_p24 | hypothetical protein | phrog_10165 | unknown function | unknown function | -1 | 11774 | 12052 |
YP_009206073.1 | NC_028882_p108 | hypothetical protein | phrog_12267 | unknown function | unknown function | 1 | 64246 | 64461 |
YP_009206006.1 | NC_028882_p41 | tRNA-specific adenosine deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 20016 | 20867 |
YP_009205997.1 | NC_028882_p32 | hypothetical protein | phrog_12439 | unknown function | unknown function | -1 | 14169 | 14447 |
YP_009206083.1 | NC_028882_p118 | hypothetical protein | phrog_12627 | unknown function | unknown function | 1 | 71175 | 71438 |
YP_009206088.1 | NC_028882_p123 | hypothetical protein | phrog_12479 | unknown function | unknown function | 1 | 72675 | 72995 |
YP_009205977.1 | NC_028882_p12 | hypothetical protein | phrog_9984 | unknown function | unknown function | 1 | 5936 | 6325 |
YP_009206028.1 | NC_028882_p63 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 36027 | 36530 |
YP_009206090.1 | NC_028882_p125 | hypothetical protein | phrog_11943 | unknown function | unknown function | 1 | 73215 | 73709 |
YP_009205987.1 | NC_028882_p22 | hypothetical protein | phrog_18236 | unknown function | unknown function | 1 | 10938 | 11201 |
YP_009206033.1 | NC_028882_p68 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 40262 | 40627 |
YP_009206016.1 | NC_028882_p51 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 27397 | 28884 |
YP_009206026.1 | NC_028882_p61 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 34950 | 35471 |
YP_009206027.1 | NC_028882_p62 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 35524 | 36027 |
YP_009206095.1 | NC_028882_p130 | hypothetical protein | phrog_13123 | unknown function | unknown function | 1 | 75655 | 75858 |
YP_009206100.1 | NC_028882_p135 | hypothetical protein | phrog_13320 | unknown function | unknown function | 1 | 77656 | 77790 |
YP_009206068.1 | NC_028882_p103 | hypothetical protein | phrog_7029 | unknown function | unknown function | 1 | 62013 | 62279 |
YP_009206075.1 | NC_028882_p110 | hypothetical protein | phrog_12364 | unknown function | unknown function | 1 | 65442 | 65666 |
YP_009205993.1 | NC_028882_p28 | hypothetical protein | phrog_10306 | unknown function | unknown function | -1 | 13025 | 13360 |
YP_009206044.1 | NC_028882_p79 | hypothetical protein | phrog_4172 | unknown function | unknown function | 1 | 48257 | 48556 |
YP_009205970.1 | NC_028882_p5 | hypothetical protein | phrog_2176 | unknown function | unknown function | 1 | 2458 | 2799 |
YP_009206058.1 | NC_028882_p93 | hypothetical protein | phrog_13021 | unknown function | unknown function | 1 | 54094 | 54489 |
YP_009206112.1 | NC_028882_p147 | hypothetical protein | phrog_38746 | unknown function | unknown function | 1 | 82296 | 82469 |
YP_009206114.1 | NC_028882_p149 | hypothetical protein | phrog_36638 | unknown function | unknown function | 1 | 82951 | 83181 |
YP_009206025.1 | NC_028882_p60 | hypothetical protein | phrog_205 | tail sheath | tail | 1 | 33617 | 34939 |
YP_009206099.1 | NC_028882_p134 | hypothetical protein | phrog_12996 | unknown function | unknown function | 1 | 77442 | 77555 |
YP_009206116.1 | NC_028882_p151 | hypothetical protein | singleton | unknown function | unknown function | 1 | 83503 | 83766 |
YP_009206078.1 | NC_028882_p113 | hypothetical protein | phrog_3506 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 66983 | 67357 |
YP_009205995.1 | NC_028882_p30 | hypothetical protein | phrog_11756 | unknown function | unknown function | -1 | 13776 | 13982 |
YP_009206014.1 | NC_028882_p49 | hypothetical protein | phrog_1954 | virion structural protein | head and packaging | 1 | 25555 | 25869 |
YP_009206064.1 | NC_028882_p99 | hypothetical protein | phrog_12310 | unknown function | unknown function | 1 | 60326 | 60511 |
YP_009205983.1 | NC_028882_p18 | hypothetical protein | phrog_3230 | unknown function | unknown function | 1 | 9591 | 10091 |
YP_009205992.1 | NC_028882_p27 | hypothetical protein | phrog_10673 | unknown function | unknown function | -1 | 12801 | 13028 |
YP_009206031.1 | NC_028882_p66 | hypothetical protein | phrog_991 | tail length tape measure protein | tail | 1 | 37162 | 39498 |
YP_009206065.1 | NC_028882_p100 | hypothetical protein | phrog_2544 | unknown function | unknown function | 1 | 60579 | 61472 |
YP_009206015.1 | NC_028882_p50 | terminase-like family protein | phrog_979 | terminase large subunit | head and packaging | 1 | 25968 | 27386 |
YP_009206089.1 | NC_028882_p124 | hypothetical protein | phrog_12962 | unknown function | unknown function | 1 | 72995 | 73162 |
YP_009206080.1 | NC_028882_p115 | hypothetical protein | phrog_11821 | unknown function | unknown function | 1 | 69216 | 69581 |
YP_009206056.1 | NC_028882_p91 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 52638 | 53858 |
YP_009206011.1 | NC_028882_p46 | hypothetical protein | phrog_13098 | unknown function | unknown function | 1 | 23026 | 23274 |
YP_009206036.1 | NC_028882_p71 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 42271 | 42636 |
YP_009205985.1 | NC_028882_p20 | hypothetical protein | phrog_5604 | unknown function | unknown function | 1 | 10416 | 10565 |
YP_009206049.1 | NC_028882_p84 | hypothetical protein | phrog_16562 | unknown function | unknown function | 1 | 50000 | 50221 |
YP_009206039.1 | NC_028882_p74 | hypothetical protein | phrog_2282 | tail fiber protein | tail | 1 | 44879 | 46882 |
YP_009206020.1 | NC_028882_p55 | hypothetical protein | phrog_29 | major head protein | head and packaging | 1 | 30584 | 31639 |
YP_009205998.1 | NC_028882_p33 | RecBCD enzyme subunit | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 14444 | 16006 |
YP_009206111.1 | NC_028882_p146 | hypothetical protein | phrog_4310 | unknown function | unknown function | 1 | 82051 | 82251 |
YP_009205978.1 | NC_028882_p13 | hypothetical protein | phrog_3956 | unknown function | unknown function | 1 | 6322 | 7581 |
YP_009205996.1 | NC_028882_p31 | hypothetical protein | phrog_14060 | unknown function | unknown function | -1 | 13991 | 14179 |
YP_009206013.1 | NC_028882_p48 | hypothetical protein | phrog_15848 | terminase large subunit | head and packaging | 1 | 24664 | 25482 |
YP_009206070.1 | NC_028882_p105 | hypothetical protein | phrog_519 | unknown function | unknown function | 1 | 63355 | 63516 |
YP_009206043.1 | NC_028882_p78 | hypothetical protein | phrog_5388 | Rz-like spanin | lysis | 1 | 48094 | 48276 |
YP_009206096.1 | NC_028882_p131 | hypothetical protein | phrog_12189 | unknown function | unknown function | 1 | 75934 | 76482 |
YP_009205980.1 | NC_028882_p15 | hypothetical protein | phrog_3483 | unknown function | unknown function | 1 | 7870 | 8385 |
YP_009206082.1 | NC_028882_p117 | hypothetical protein | phrog_1106 | unknown function | unknown function | 1 | 70703 | 71185 |
YP_009205979.1 | NC_028882_p14 | hypothetical protein | phrog_8303 | unknown function | unknown function | 1 | 7581 | 7826 |
YP_009206101.1 | NC_028882_p136 | hypothetical protein | phrog_12567 | unknown function | unknown function | 1 | 77775 | 78167 |
YP_009206004.1 | NC_028882_p39 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 18457 | 19728 |
YP_009206081.1 | NC_028882_p116 | ribonucleoside-diphosphate reductase subunit beta | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 69623 | 70642 |
YP_009206077.1 | NC_028882_p112 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 66080 | 66979 |
YP_009206038.1 | NC_028882_p73 | hypothetical protein | phrog_587 | structural protein | head and packaging | 1 | 44105 | 44869 |
YP_009206063.1 | NC_028882_p98 | hypothetical protein | phrog_12101 | unknown function | unknown function | 1 | 59973 | 60179 |
YP_009206108.1 | NC_028882_p143 | hypothetical protein | phrog_6091 | unknown function | unknown function | 1 | 80588 | 80833 |
YP_009205973.1 | NC_028882_p8 | hypothetical protein | phrog_2176 | unknown function | unknown function | 1 | 4048 | 4728 |
YP_009206001.1 | NC_028882_p36 | hypothetical protein | phrog_11519 | unknown function | unknown function | -1 | 17023 | 17271 |
YP_009205982.1 | NC_028882_p17 | hypothetical protein | phrog_4029 | unknown function | unknown function | 1 | 8891 | 9619 |
YP_009205971.1 | NC_028882_p6 | hypothetical protein | phrog_3483 | unknown function | unknown function | 1 | 2796 | 3698 |
YP_009206109.1 | NC_028882_p144 | hypothetical protein | phrog_11104 | unknown function | unknown function | 1 | 80910 | 81443 |
YP_009206009.1 | NC_028882_p44 | hypothetical protein | phrog_12276 | unknown function | unknown function | -1 | 21647 | 22189 |
YP_009206030.1 | NC_028882_p65 | hypothetical protein | phrog_4625 | unknown function | unknown function | 1 | 36951 | 37172 |
YP_009206023.1 | NC_028882_p58 | hypothetical protein | phrog_939 | head protein | head and packaging | 1 | 32623 | 32994 |
YP_009206051.1 | NC_028882_p86 | hypothetical protein | phrog_4794 | unknown function | unknown function | 1 | 50435 | 50701 |
YP_009206048.1 | NC_028882_p83 | hypothetical protein | phrog_14224 | unknown function | unknown function | 1 | 49758 | 49994 |
YP_009206086.1 | NC_028882_p121 | hypothetical protein | phrog_11258 | unknown function | unknown function | 1 | 71957 | 72511 |
YP_009206069.1 | NC_028882_p104 | hypothetical protein | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 62279 | 63367 |
YP_009206054.1 | NC_028882_p89 | hypothetical protein | phrog_13454 | unknown function | unknown function | 1 | 51976 | 52272 |
YP_009206084.1 | NC_028882_p119 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 71431 | 71661 |
YP_009205981.1 | NC_028882_p16 | hypothetical protein | phrog_343 | unknown function | unknown function | 1 | 8378 | 8707 |
YP_009206072.1 | NC_028882_p107 | hypothetical protein | phrog_1985 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 63686 | 64249 |
YP_009206067.1 | NC_028882_p102 | hypothetical protein | phrog_12381 | unknown function | unknown function | 1 | 61726 | 62001 |
YP_009206019.1 | NC_028882_p54 | hypothetical protein | phrog_49 | head decoration | head and packaging | 1 | 30199 | 30573 |
YP_009206102.1 | NC_028882_p137 | hypothetical protein | phrog_13058 | unknown function | unknown function | 1 | 78256 | 78519 |
YP_009205976.1 | NC_028882_p11 | hypothetical protein | phrog_7181 | unknown function | unknown function | 1 | 5653 | 5841 |
YP_009205988.1 | NC_028882_p23 | hypothetical protein | phrog_13737 | unknown function | unknown function | -1 | 11469 | 11699 |
YP_009206047.1 | NC_028882_p82 | hypothetical protein | phrog_12190 | unknown function | unknown function | 1 | 49411 | 49620 |
YP_009206002.1 | NC_028882_p37 | spore cortex-lytic enzyme precursor | phrog_938 | endolysin | lysis | -1 | 17281 | 17844 |
YP_009206000.1 | NC_028882_p35 | hypothetical protein | phrog_768 | DprA-like DNA recombination-mediator protein | DNA, RNA and nucleotide metabolism | -1 | 16424 | 17026 |
YP_009206079.1 | NC_028882_p114 | ribonucleoside-diphosphate reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 67350 | 69206 |
YP_009206037.1 | NC_028882_p72 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 42637 | 44103 |
YP_009206003.1 | NC_028882_p38 | hypothetical protein | phrog_2686 | unknown function | unknown function | -1 | 17897 | 18397 |
YP_009206055.1 | NC_028882_p90 | hypothetical protein | phrog_9905 | unknown function | unknown function | 1 | 52274 | 52645 |
YP_009206059.1 | NC_028882_p94 | hypothetical protein | phrog_12927 | unknown function | unknown function | 1 | 54476 | 55012 |
YP_009205990.1 | NC_028882_p25 | hypothetical protein | phrog_10597 | unknown function | unknown function | -1 | 12049 | 12228 |
YP_009206010.1 | NC_028882_p45 | hypothetical protein | phrog_3900 | unknown function | unknown function | 1 | 22668 | 23024 |
YP_009206045.1 | NC_028882_p80 | hypothetical protein | phrog_3899 | unknown function | unknown function | 1 | 48572 | 48859 |
YP_009206105.1 | NC_028882_p140 | hypothetical protein | phrog_15314 | unknown function | unknown function | 1 | 79150 | 79641 |
YP_009206057.1 | NC_028882_p92 | hypothetical protein | phrog_13122 | unknown function | unknown function | 1 | 53868 | 54053 |
YP_009206097.1 | NC_028882_p132 | hypothetical protein | phrog_9396 | unknown function | unknown function | 1 | 76563 | 76961 |
YP_009206103.1 | NC_028882_p138 | hypothetical protein | phrog_4025 | unknown function | unknown function | 1 | 78519 | 78755 |
YP_009206053.1 | NC_028882_p88 | SPFH domain / band 7 family protein | phrog_200 | lipoprotein | other | 1 | 51076 | 51927 |
YP_009206094.1 | NC_028882_p129 | hypothetical protein | phrog_5289 | unknown function | unknown function | 1 | 75362 | 75595 |
YP_009206117.1 | NC_028882_p152 | hypothetical protein | phrog_11866 | unknown function | unknown function | 1 | 83823 | 84041 |
YP_009205969.1 | NC_028882_p4 | hypothetical protein | phrog_2176 | unknown function | unknown function | 1 | 2115 | 2471 |
YP_009206021.1 | NC_028882_p56 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 31693 | 32178 |
YP_009205967.1 | NC_028882_p2 | hypothetical protein | phrog_2176 | unknown function | unknown function | 1 | 1411 | 1752 |
YP_009206008.1 | NC_028882_p43 | hypothetical protein | phrog_11910 | unknown function | unknown function | -1 | 21252 | 21650 |
YP_009206113.1 | NC_028882_p148 | hypothetical protein | phrog_16815 | unknown function | unknown function | 1 | 82725 | 82910 |
YP_009206071.1 | NC_028882_p106 | hypothetical protein | phrog_12564 | unknown function | unknown function | 1 | 63516 | 63689 |
YP_009205975.1 | NC_028882_p10 | hypothetical protein | phrog_2614 | unknown function | unknown function | 1 | 5310 | 5624 |
YP_009206029.1 | NC_028882_p64 | hypothetical protein | phrog_1613 | tail assembly chaperone | tail | 1 | 36544 | 36930 |
YP_009205999.1 | NC_028882_p34 | hypothetical protein | phrog_3360 | unknown function | unknown function | -1 | 15984 | 16469 |
YP_009206018.1 | NC_028882_p53 | hypothetical protein | phrog_4103 | unknown function | unknown function | 1 | 29295 | 30182 |
YP_009205994.1 | NC_028882_p29 | proteasome subunit beta | phrog_1040 | peptidase HslV family | other | -1 | 13351 | 13779 |
YP_009206093.1 | NC_028882_p128 | hypothetical protein | phrog_5201 | unknown function | unknown function | 1 | 75081 | 75350 |
YP_009206052.1 | NC_028882_p87 | hypothetical protein | phrog_13586 | unknown function | unknown function | 1 | 50698 | 51066 |
YP_009206040.1 | NC_028882_p75 | hypothetical protein | phrog_2860 | endolysin | head and packaging | 1 | 46884 | 47447 |
YP_009205972.1 | NC_028882_p7 | hypothetical protein | phrog_2176 | unknown function | unknown function | 1 | 3695 | 4048 |
YP_009206046.1 | NC_028882_p81 | hypothetical protein | phrog_12496 | unknown function | unknown function | 1 | 48968 | 49387 |
YP_009206042.1 | NC_028882_p77 | hypothetical protein | phrog_4349 | Rz-like spanin | lysis | 1 | 47691 | 48107 |
YP_009206066.1 | NC_028882_p101 | hypothetical protein | phrog_7018 | unknown function | unknown function | 1 | 61531 | 61725 |
YP_009205966.1 | NC_028882_p1 | hypothetical protein | phrog_2176 | unknown function | unknown function | 1 | 990 | 1421 |
YP_009206017.1 | NC_028882_p52 | hypothetical protein | phrog_1530 | DNA methyltransferase | other | 1 | 28886 | 29302 |
YP_009206034.1 | NC_028882_p69 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 40628 | 41509 |
YP_009206091.1 | NC_028882_p126 | hypothetical protein | phrog_12731 | unknown function | unknown function | 1 | 73706 | 74185 |
YP_009206062.1 | NC_028882_p97 | DNA polymerase family A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 57299 | 59956 |
YP_009206035.1 | NC_028882_p70 | hypothetical protein | phrog_11 | baseplate spike | tail | 1 | 41506 | 42264 |
YP_009206061.1 | NC_028882_p96 | hypothetical protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 55326 | 57278 |
YP_009206050.1 | NC_028882_p85 | hypothetical protein | phrog_14175 | unknown function | unknown function | 1 | 50224 | 50424 |
YP_009206074.1 | NC_028882_p109 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64471 | 65388 |
YP_009206041.1 | NC_028882_p76 | hypothetical protein | phrog_12175 | unknown function | unknown function | 1 | 47428 | 47694 |
YP_009206106.1 | NC_028882_p141 | hypothetical protein | phrog_15407 | unknown function | unknown function | 1 | 79652 | 80011 |
YP_009206098.1 | NC_028882_p133 | hypothetical protein | phrog_12145 | unknown function | unknown function | 1 | 77028 | 77417 |
YP_009206076.1 | NC_028882_p111 | hypothetical protein | phrog_4521 | unknown function | unknown function | 1 | 65663 | 66076 |
YP_009206087.1 | NC_028882_p122 | hypothetical protein | phrog_7860 | unknown function | unknown function | 1 | 72492 | 72665 |
YP_009205968.1 | NC_028882_p3 | hypothetical protein | phrog_2176 | unknown function | unknown function | 1 | 1742 | 2128 |