Genomic map of Clostridium phage phiMMP01 (NC_028883)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028883
Definition
Clostridium phage phiMMP01, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
REFSEQ
Length
44461
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
81
%GC
28.91
Number of singletons
0
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009206184.1 NC_028883_p66 hypothetical protein phrog_98 unknown function unknown function 1 38802 39215
YP_009206123.1 NC_028883_p5 hypothetical protein phrog_1865 unknown function unknown function 1 4840 5040
YP_009206133.1 NC_028883_p15 core tail phrog_365 tail protein tail 1 9922 10392
YP_009206132.1 NC_028883_p14 sheath tail protein phrog_279 tail sheath tail 1 8590 9900
YP_009206144.1 NC_028883_p26 hypothetical protein phrog_120 baseplate wedge subunit tail 1 18626 19045
YP_009206168.1 NC_028883_p50 SPBc2 prophage-derived antirepressor protein yoqD phrog_63 anti-repressor Ant transcription regulation 1 31992 32780
YP_009206128.1 NC_028883_p10 hypothetical protein phrog_615 head-tail adaptor connector 1 7248 7565
YP_009206156.1 NC_028883_p38 hypothetical protein phrog_9105 unknown function unknown function 1 25642 26226
YP_009206196.1 NC_028883_p78 hypothetical protein phrog_1758 acetyltransferase other 1 42937 43548
YP_009206161.1 NC_028883_p43 transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 28245 28628
YP_009206127.1 NC_028883_p9 hypothetical protein phrog_132 head-tail adaptor connector 1 6823 7224
YP_009206151.1 NC_028883_p33 hypothetical protein phrog_9012 unknown function unknown function 1 22883 23476
YP_009206147.1 NC_028883_p29 tail fiber protein phrog_1162 tail fiber protein tail 1 20716 21792
YP_009206175.1 NC_028883_p57 repressor phrog_3 transcriptional repressor transcription regulation 1 34851 35048
YP_009206197.1 NC_028883_p79 hypothetical protein phrog_4010 unknown function unknown function 1 43625 43813
YP_009206130.1 NC_028883_p12 hypothetical protein phrog_525 unknown function unknown function 1 7983 8420
YP_009206166.1 NC_028883_p48 repressor phrog_8 transcriptional regulator transcription regulation -1 31186 31581
YP_009206158.1 NC_028883_p40 hypothetical protein phrog_2569 unknown function unknown function -1 26636 26824
YP_009206187.1 NC_028883_p69 hypothetical protein phrog_2961 unknown function unknown function 1 39838 39972
YP_009206160.1 NC_028883_p42 hypothetical protein phrog_1077 transcriptional regulator transcription regulation 1 27763 28140
YP_009206189.1 NC_028883_p71 hypothetical protein phrog_3794 unknown function unknown function 1 40091 40219
YP_009206150.1 NC_028883_p32 hypothetical protein phrog_1243 unknown function unknown function 1 22666 22848
YP_009206174.1 NC_028883_p56 hypothetical protein phrog_12952 unknown function unknown function -1 34598 34780
YP_009206155.1 NC_028883_p37 hypothetical protein phrog_9125 unknown function unknown function 1 25148 25639
YP_009206131.1 NC_028883_p13 hypothetical protein phrog_966 unknown function unknown function 1 8413 8589
YP_009206119.1 NC_028883_p1 phage-related terminase small subunit phrog_509 terminase small subunit head and packaging 1 70 762
YP_009206172.1 NC_028883_p54 Predicted prophage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 33563 34354
YP_009206126.1 NC_028883_p8 hypothetical protein phrog_1378 unknown function unknown function 1 6580 6813
YP_009206148.1 NC_028883_p30 hypothetical protein phrog_3361 unknown function unknown function 1 21806 22444
YP_009206165.1 NC_028883_p47 hypothetical protein phrog_18539 unknown function unknown function 1 31012 31149
YP_009206171.1 NC_028883_p53 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 33390 33560
YP_009206141.1 NC_028883_p23 LysM phrog_380 endolysin lysis 1 15683 16384
YP_009206188.1 NC_028883_p70 hypothetical protein phrog_6827 unknown function unknown function 1 39956 40075
YP_009206176.1 NC_028883_p58 hypothetical protein phrog_1877 DNA binding protein DNA, RNA and nucleotide metabolism 1 35087 35521
YP_009206140.1 NC_028883_p22 tail tape measure protein phrog_1068 tail length tape measure protein tail 1 13378 15666
YP_009206182.1 NC_028883_p64 phage resolvase/integrase phrog_3253 unknown function unknown function 1 38126 38299
YP_009206179.1 NC_028883_p61 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 36066 36575
YP_009206137.1 NC_028883_p19 hypothetical protein phrog_1664 unknown function unknown function 1 11778 12011
YP_009206193.1 NC_028883_p75 hypothetical protein phrog_38429 unknown function unknown function 1 41516 41629
YP_009206138.1 NC_028883_p20 conserved exported protein of unknown function phrog_806 unknown function unknown function 1 12071 12598
YP_009206149.1 NC_028883_p31 hypothetical protein phrog_4196 unknown function unknown function 1 22454 22666
YP_009206157.1 NC_028883_p39 hypothetical protein phrog_17489 unknown function unknown function 1 26408 26560
YP_009206124.1 NC_028883_p6 scaffold protein phrog_194 head scaffolding protein head and packaging 1 5106 5669
YP_009206129.1 NC_028883_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7565 7990
YP_009206195.1 NC_028883_p77 hypothetical protein phrog_3291 unknown function unknown function 1 42764 42937
YP_009206169.1 NC_028883_p51 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 32835 32972
YP_009206136.1 NC_028883_p18 hypothetical protein phrog_738 unknown function unknown function 1 11468 11629
YP_009206170.1 NC_028883_p52 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 32958 33269
YP_009206191.1 NC_028883_p73 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 40475 40891
YP_009206164.1 NC_028883_p46 cI repressor phrog_3 transcriptional repressor transcription regulation -1 30507 30728
YP_009206181.1 NC_028883_p63 DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 37184 38065
YP_009206153.1 NC_028883_p35 Holin phrog_1129 holin lysis 1 23829 24086
YP_009206180.1 NC_028883_p62 phage essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 36585 37169
YP_009206190.1 NC_028883_p72 hypothetical protein phrog_4531 unknown function unknown function 1 40251 40448
YP_009206199.1 NC_028883_p81 hypothetical protein phrog_4083 unknown function unknown function 1 44234 44461
YP_009206142.1 NC_028883_p24 phage cell wall hydrolase phrog_400 tail protein tail 1 16377 18347
YP_009206173.1 NC_028883_p55 hypothetical protein phrog_12144 unknown function unknown function 1 34414 34611
YP_009206122.1 NC_028883_p4 head morphogenesis protein phrog_115 minor head protein head and packaging 1 3428 4825
YP_009206198.1 NC_028883_p80 hypothetical protein phrog_2211 unknown function unknown function -1 43793 44110
YP_009206154.1 NC_028883_p36 Endolysin phrog_435 endolysin lysis 1 24086 24898
YP_009206125.1 NC_028883_p7 Capsid protein phrog_422 major head protein head and packaging 1 5681 6580
YP_009206145.1 NC_028883_p27 hypothetical protein phrog_6 baseplate wedge subunit tail 1 19045 20094
YP_009206135.1 NC_028883_p17 hypothetical protein phrog_389 tail protein XkdN-like tail 1 10707 11147
YP_009206185.1 NC_028883_p67 hypothetical protein phrog_4601 unknown function unknown function 1 39202 39459
YP_009206134.1 NC_028883_p16 hypothetical protein phrog_3466 unknown function unknown function 1 10445 10702
YP_009206139.1 NC_028883_p21 hypothetical protein phrog_2546 unknown function unknown function 1 12740 13300
YP_009206159.1 NC_028883_p41 hypothetical protein phrog_26604 unknown function unknown function 1 27077 27226
YP_009206178.1 NC_028883_p60 hypothetical protein phrog_2219 unknown function unknown function 1 35671 35988
YP_009206167.1 NC_028883_p49 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 31760 32023
YP_009206143.1 NC_028883_p25 hypothetical protein phrog_579 unknown function unknown function 1 18361 18621
YP_009206162.1 NC_028883_p44 integrase phrog_1 integrase integration and excision -1 28938 30104
YP_009206183.1 NC_028883_p65 Single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 38315 38731
YP_009206152.1 NC_028883_p34 hypothetical protein phrog_1863 unknown function unknown function 1 23535 23825
YP_009206177.1 NC_028883_p59 hypothetical protein phrog_11749 unknown function unknown function 1 35522 35668
YP_009206192.1 NC_028883_p74 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 40910 41410
YP_009206146.1 NC_028883_p28 hypothetical protein phrog_521 tail protein tail 1 20087 20704
YP_009206120.1 NC_028883_p2 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 752 1993
YP_009206194.1 NC_028883_p76 hypothetical protein phrog_2655 excisionase integration and excision 1 41831 42037
YP_009206121.1 NC_028883_p3 Phage portal protein, SPP1 family phrog_64 portal protein head and packaging 1 1999 3438
YP_009206163.1 NC_028883_p45 hypothetical protein phrog_8194 unknown function unknown function -1 30242 30448
YP_009206186.1 NC_028883_p68 hypothetical protein phrog_1310 unknown function unknown function 1 39473 39838