| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028883 |
Definition |
Clostridium phage phiMMP01, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
REFSEQ |
Length |
44461 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
81 |
%GC |
28.91 |
Number of singletons |
0 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009206184.1 | NC_028883_p66 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 38802 | 39215 |
| YP_009206123.1 | NC_028883_p5 | hypothetical protein | phrog_1865 | unknown function | unknown function | 1 | 4840 | 5040 |
| YP_009206133.1 | NC_028883_p15 | core tail | phrog_365 | tail protein | tail | 1 | 9922 | 10392 |
| YP_009206132.1 | NC_028883_p14 | sheath tail protein | phrog_279 | tail sheath | tail | 1 | 8590 | 9900 |
| YP_009206144.1 | NC_028883_p26 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 18626 | 19045 |
| YP_009206168.1 | NC_028883_p50 | SPBc2 prophage-derived antirepressor protein yoqD | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 31992 | 32780 |
| YP_009206128.1 | NC_028883_p10 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 7248 | 7565 |
| YP_009206156.1 | NC_028883_p38 | hypothetical protein | phrog_9105 | unknown function | unknown function | 1 | 25642 | 26226 |
| YP_009206196.1 | NC_028883_p78 | hypothetical protein | phrog_1758 | acetyltransferase | other | 1 | 42937 | 43548 |
| YP_009206161.1 | NC_028883_p43 | transcriptional regulator | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 28245 | 28628 |
| YP_009206127.1 | NC_028883_p9 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 6823 | 7224 |
| YP_009206151.1 | NC_028883_p33 | hypothetical protein | phrog_9012 | unknown function | unknown function | 1 | 22883 | 23476 |
| YP_009206147.1 | NC_028883_p29 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 20716 | 21792 |
| YP_009206175.1 | NC_028883_p57 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34851 | 35048 |
| YP_009206197.1 | NC_028883_p79 | hypothetical protein | phrog_4010 | unknown function | unknown function | 1 | 43625 | 43813 |
| YP_009206130.1 | NC_028883_p12 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 7983 | 8420 |
| YP_009206166.1 | NC_028883_p48 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 31186 | 31581 |
| YP_009206158.1 | NC_028883_p40 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 26636 | 26824 |
| YP_009206187.1 | NC_028883_p69 | hypothetical protein | phrog_2961 | unknown function | unknown function | 1 | 39838 | 39972 |
| YP_009206160.1 | NC_028883_p42 | hypothetical protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 27763 | 28140 |
| YP_009206189.1 | NC_028883_p71 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 40091 | 40219 |
| YP_009206150.1 | NC_028883_p32 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 22666 | 22848 |
| YP_009206174.1 | NC_028883_p56 | hypothetical protein | phrog_12952 | unknown function | unknown function | -1 | 34598 | 34780 |
| YP_009206155.1 | NC_028883_p37 | hypothetical protein | phrog_9125 | unknown function | unknown function | 1 | 25148 | 25639 |
| YP_009206131.1 | NC_028883_p13 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 8413 | 8589 |
| YP_009206119.1 | NC_028883_p1 | phage-related terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 70 | 762 |
| YP_009206172.1 | NC_028883_p54 | Predicted prophage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 33563 | 34354 |
| YP_009206126.1 | NC_028883_p8 | hypothetical protein | phrog_1378 | unknown function | unknown function | 1 | 6580 | 6813 |
| YP_009206148.1 | NC_028883_p30 | hypothetical protein | phrog_3361 | unknown function | unknown function | 1 | 21806 | 22444 |
| YP_009206165.1 | NC_028883_p47 | hypothetical protein | phrog_18539 | unknown function | unknown function | 1 | 31012 | 31149 |
| YP_009206171.1 | NC_028883_p53 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 33390 | 33560 |
| YP_009206141.1 | NC_028883_p23 | LysM | phrog_380 | endolysin | lysis | 1 | 15683 | 16384 |
| YP_009206188.1 | NC_028883_p70 | hypothetical protein | phrog_6827 | unknown function | unknown function | 1 | 39956 | 40075 |
| YP_009206176.1 | NC_028883_p58 | hypothetical protein | phrog_1877 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35087 | 35521 |
| YP_009206140.1 | NC_028883_p22 | tail tape measure protein | phrog_1068 | tail length tape measure protein | tail | 1 | 13378 | 15666 |
| YP_009206182.1 | NC_028883_p64 | phage resolvase/integrase | phrog_3253 | unknown function | unknown function | 1 | 38126 | 38299 |
| YP_009206179.1 | NC_028883_p61 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 36066 | 36575 |
| YP_009206137.1 | NC_028883_p19 | hypothetical protein | phrog_1664 | unknown function | unknown function | 1 | 11778 | 12011 |
| YP_009206193.1 | NC_028883_p75 | hypothetical protein | phrog_38429 | unknown function | unknown function | 1 | 41516 | 41629 |
| YP_009206138.1 | NC_028883_p20 | conserved exported protein of unknown function | phrog_806 | unknown function | unknown function | 1 | 12071 | 12598 |
| YP_009206149.1 | NC_028883_p31 | hypothetical protein | phrog_4196 | unknown function | unknown function | 1 | 22454 | 22666 |
| YP_009206157.1 | NC_028883_p39 | hypothetical protein | phrog_17489 | unknown function | unknown function | 1 | 26408 | 26560 |
| YP_009206124.1 | NC_028883_p6 | scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5106 | 5669 |
| YP_009206129.1 | NC_028883_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7565 | 7990 |
| YP_009206195.1 | NC_028883_p77 | hypothetical protein | phrog_3291 | unknown function | unknown function | 1 | 42764 | 42937 |
| YP_009206169.1 | NC_028883_p51 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 32835 | 32972 |
| YP_009206136.1 | NC_028883_p18 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 11468 | 11629 |
| YP_009206170.1 | NC_028883_p52 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | -1 | 32958 | 33269 |
| YP_009206191.1 | NC_028883_p73 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 40475 | 40891 |
| YP_009206164.1 | NC_028883_p46 | cI repressor | phrog_3 | transcriptional repressor | transcription regulation | -1 | 30507 | 30728 |
| YP_009206181.1 | NC_028883_p63 | DnaD | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 37184 | 38065 |
| YP_009206153.1 | NC_028883_p35 | Holin | phrog_1129 | holin | lysis | 1 | 23829 | 24086 |
| YP_009206180.1 | NC_028883_p62 | phage essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 36585 | 37169 |
| YP_009206190.1 | NC_028883_p72 | hypothetical protein | phrog_4531 | unknown function | unknown function | 1 | 40251 | 40448 |
| YP_009206199.1 | NC_028883_p81 | hypothetical protein | phrog_4083 | unknown function | unknown function | 1 | 44234 | 44461 |
| YP_009206142.1 | NC_028883_p24 | phage cell wall hydrolase | phrog_400 | tail protein | tail | 1 | 16377 | 18347 |
| YP_009206173.1 | NC_028883_p55 | hypothetical protein | phrog_12144 | unknown function | unknown function | 1 | 34414 | 34611 |
| YP_009206122.1 | NC_028883_p4 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 3428 | 4825 |
| YP_009206198.1 | NC_028883_p80 | hypothetical protein | phrog_2211 | unknown function | unknown function | -1 | 43793 | 44110 |
| YP_009206154.1 | NC_028883_p36 | Endolysin | phrog_435 | endolysin | lysis | 1 | 24086 | 24898 |
| YP_009206125.1 | NC_028883_p7 | Capsid protein | phrog_422 | major head protein | head and packaging | 1 | 5681 | 6580 |
| YP_009206145.1 | NC_028883_p27 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19045 | 20094 |
| YP_009206135.1 | NC_028883_p17 | hypothetical protein | phrog_389 | tail protein XkdN-like | tail | 1 | 10707 | 11147 |
| YP_009206185.1 | NC_028883_p67 | hypothetical protein | phrog_4601 | unknown function | unknown function | 1 | 39202 | 39459 |
| YP_009206134.1 | NC_028883_p16 | hypothetical protein | phrog_3466 | unknown function | unknown function | 1 | 10445 | 10702 |
| YP_009206139.1 | NC_028883_p21 | hypothetical protein | phrog_2546 | unknown function | unknown function | 1 | 12740 | 13300 |
| YP_009206159.1 | NC_028883_p41 | hypothetical protein | phrog_26604 | unknown function | unknown function | 1 | 27077 | 27226 |
| YP_009206178.1 | NC_028883_p60 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 35671 | 35988 |
| YP_009206167.1 | NC_028883_p49 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 31760 | 32023 |
| YP_009206143.1 | NC_028883_p25 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 18361 | 18621 |
| YP_009206162.1 | NC_028883_p44 | integrase | phrog_1 | integrase | integration and excision | -1 | 28938 | 30104 |
| YP_009206183.1 | NC_028883_p65 | Single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38315 | 38731 |
| YP_009206152.1 | NC_028883_p34 | hypothetical protein | phrog_1863 | unknown function | unknown function | 1 | 23535 | 23825 |
| YP_009206177.1 | NC_028883_p59 | hypothetical protein | phrog_11749 | unknown function | unknown function | 1 | 35522 | 35668 |
| YP_009206192.1 | NC_028883_p74 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 40910 | 41410 |
| YP_009206146.1 | NC_028883_p28 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 20087 | 20704 |
| YP_009206120.1 | NC_028883_p2 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 752 | 1993 |
| YP_009206194.1 | NC_028883_p76 | hypothetical protein | phrog_2655 | excisionase | integration and excision | 1 | 41831 | 42037 |
| YP_009206121.1 | NC_028883_p3 | Phage portal protein, SPP1 family | phrog_64 | portal protein | head and packaging | 1 | 1999 | 3438 |
| YP_009206163.1 | NC_028883_p45 | hypothetical protein | phrog_8194 | unknown function | unknown function | -1 | 30242 | 30448 |
| YP_009206186.1 | NC_028883_p68 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 39473 | 39838 |