Genomic map of Mycobacterium phage Florinda (NC_028889)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028889
Definition
Mycobacterium phage Florinda, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
59416
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
117
%GC
61.74
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009206783.1 NC_028889_p65 hypothetical protein phrog_1797 unknown function unknown function 1 39887 40492
YP_009206798.1 NC_028889_p80 DNA methylase phrog_116 DNA methyltransferase other 1 44991 46736
YP_009206736.1 NC_028889_p18 minor tail protein phrog_346 minor tail protein tail 1 17419 19956
YP_009206750.1 NC_028889_p32 holin phrog_443 holin lysis 1 28535 28768
YP_009206830.1 NC_028889_p112 hypothetical protein phrog_2057 unknown function unknown function 1 56324 56485
YP_009206748.1 NC_028889_p30 lysin A phrog_700 endolysin lysis 1 26327 27520
YP_009206801.1 NC_028889_p83 hypothetical protein phrog_8611 unknown function unknown function -1 47243 47575
YP_009206809.1 NC_028889_p91 hypothetical protein phrog_5892 unknown function unknown function 1 50859 51017
YP_009206723.1 NC_028889_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4455 5048
YP_009206744.1 NC_028889_p26 hypothetical protein phrog_411 unknown function unknown function 1 25455 25739
YP_009206774.1 NC_028889_p56 HTH DNA-binding domain protein phrog_6267 transcriptional repressor transcription regulation 1 35758 36090
YP_009206825.1 NC_028889_p107 hypothetical protein phrog_35039 unknown function unknown function 1 55142 55246
YP_009206727.1 NC_028889_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6799 7125
YP_009206737.1 NC_028889_p19 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 19953 21839
YP_009206792.1 NC_028889_p74 hypothetical protein phrog_2632 unknown function unknown function 1 43140 43385
YP_009206779.1 NC_028889_p61 hypothetical protein phrog_15946 unknown function unknown function 1 38480 38935
YP_009206818.1 NC_028889_p100 hypothetical protein phrog_5186 unknown function unknown function 1 52791 52964
YP_009206815.1 NC_028889_p97 hypothetical protein phrog_6540 unknown function unknown function 1 52185 52481
YP_009206780.1 NC_028889_p62 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 38976 39173
YP_009206724.1 NC_028889_p6 capsid protein phrog_267 major head protein head and packaging 1 5067 5888
YP_009206733.1 NC_028889_p15 hypothetical protein phrog_106 minor tail protein tail 1 13038 14747
YP_009206762.1 NC_028889_p44 hypothetical protein phrog_2437 unknown function unknown function -1 31512 31679
YP_009206770.1 NC_028889_p52 hypothetical protein phrog_1948 unknown function unknown function -1 34387 34836
YP_009206800.1 NC_028889_p82 hypothetical protein phrog_8485 unknown function unknown function -1 46859 47236
YP_009206785.1 NC_028889_p67 hypothetical protein phrog_1849 unknown function unknown function 1 40870 41151
YP_009206795.1 NC_028889_p77 hypothetical protein phrog_2070 unknown function unknown function 1 44348 44518
YP_009206749.1 NC_028889_p31 lysin B phrog_102 endolysin lysis 1 27520 28521
YP_009206756.1 NC_028889_p38 hypothetical protein phrog_1839 unknown function unknown function 1 30500 30595
YP_009206775.1 NC_028889_p57 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 36157 36951
YP_009206755.1 NC_028889_p37 hypothetical protein phrog_1791 unknown function unknown function 1 30277 30510
YP_009206732.1 NC_028889_p14 tapemeasure phrog_1942 tail length tape measure protein tail 1 9513 13037
YP_009206720.1 NC_028889_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 584 2221
YP_009206821.1 NC_028889_p103 hypothetical protein phrog_10123 unknown function unknown function 1 53577 53855
YP_009206826.1 NC_028889_p108 hypothetical protein phrog_1694 unknown function unknown function 1 55253 55408
YP_009206811.1 NC_028889_p93 hypothetical protein phrog_7842 unknown function unknown function 1 51421 51594
YP_009206782.1 NC_028889_p64 hypothetical protein phrog_1816 unknown function unknown function 1 39732 39890
YP_009206807.1 NC_028889_p89 hypothetical protein phrog_2730 unknown function unknown function 1 50468 50671
YP_009206810.1 NC_028889_p92 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 51063 51434
YP_009206786.1 NC_028889_p68 hypothetical protein phrog_658 unknown function unknown function 1 41148 41495
YP_009206833.1 NC_028889_p115 hypothetical protein phrog_2864 unknown function unknown function 1 58161 58328
YP_009206766.1 NC_028889_p48 hypothetical protein phrog_5254 unknown function unknown function -1 32209 32451
YP_009206803.1 NC_028889_p85 DNA methylase phrog_67 DNA methyltransferase other 1 47777 49225
YP_009206788.1 NC_028889_p70 hypothetical protein phrog_2096 unknown function unknown function 1 41899 42399
YP_009206764.1 NC_028889_p46 hypothetical protein phrog_12593 unknown function unknown function -1 31740 31910
YP_009206734.1 NC_028889_p16 hypothetical protein phrog_110 minor tail protein tail 1 14828 16537
YP_009206753.1 NC_028889_p35 DnaQ-like protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29383 30204
YP_009206746.1 NC_028889_p28 hypothetical protein phrog_1172 unknown function unknown function 1 25889 26032
YP_009206769.1 NC_028889_p51 integrase phrog_1 integrase integration and excision 1 33021 34310
YP_009206834.1 NC_028889_p116 glycosyltransferase domain protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 58325 58948
YP_009206835.1 NC_028889_p117 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 58948 59274
YP_009206776.1 NC_028889_p58 hypothetical protein phrog_18246 unknown function unknown function 1 36954 37469
YP_009206799.1 NC_028889_p81 hypothetical protein phrog_6506 Arc-like repressor transcription regulation -1 46705 46866
YP_009206827.1 NC_028889_p109 hypothetical protein phrog_3813 unknown function unknown function 1 55405 55662
YP_009206793.1 NC_028889_p75 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 43399 43977
YP_009206777.1 NC_028889_p59 hypothetical protein singleton unknown function unknown function 1 37512 37754
YP_009206802.1 NC_028889_p84 hypothetical protein phrog_2001 unknown function unknown function 1 47608 47730
YP_009206794.1 NC_028889_p76 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43974 44336
YP_009206730.1 NC_028889_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8559 9495
YP_009206752.1 NC_028889_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29136 29396
YP_009206781.1 NC_028889_p63 hypothetical protein phrog_2021 unknown function unknown function 1 39217 39705
YP_009206722.1 NC_028889_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3615 4370
YP_009206822.1 NC_028889_p104 hypothetical protein phrog_2247 unknown function unknown function 1 53858 54109
YP_009206823.1 NC_028889_p105 hypothetical protein phrog_1467 unknown function unknown function 1 54106 54750
YP_009206742.1 NC_028889_p24 hypothetical protein phrog_754 minor tail protein tail 1 24279 25103
YP_009206759.1 NC_028889_p41 hypothetical protein phrog_7977 unknown function unknown function -1 30952 31206
YP_009206741.1 NC_028889_p23 hypothetical protein phrog_2012 minor tail protein tail 1 23644 24282
YP_009206754.1 NC_028889_p36 hypothetical protein phrog_8186 unknown function unknown function 1 30206 30292
YP_009206738.1 NC_028889_p20 hypothetical protein phrog_2106 minor tail protein tail 1 21836 22999
YP_009206787.1 NC_028889_p69 WhiB phrog_1333 unknown function unknown function 1 41495 41902
YP_009206768.1 NC_028889_p50 hypothetical protein phrog_10321 unknown function unknown function -1 32634 32762
YP_009206767.1 NC_028889_p49 hypothetical protein phrog_25963 unknown function unknown function -1 32465 32593
YP_009206757.1 NC_028889_p39 hypothetical protein singleton unknown function unknown function 1 30606 30719
YP_009206745.1 NC_028889_p27 hypothetical protein phrog_932 unknown function unknown function 1 25746 25892
YP_009206816.1 NC_028889_p98 hypothetical protein phrog_1091 unknown function unknown function 1 52463 52657
YP_009206773.1 NC_028889_p55 hypothetical protein singleton unknown function unknown function -1 35346 35633
YP_009206808.1 NC_028889_p90 hypothetical protein phrog_1943 unknown function unknown function 1 50668 50862
YP_009206772.1 NC_028889_p54 immunity repressor phrog_3949 transcriptional repressor transcription regulation -1 35102 35452
YP_009206751.1 NC_028889_p33 hypothetical protein phrog_404 minor tail protein tail 1 28765 29139
YP_009206760.1 NC_028889_p42 hypothetical protein phrog_10332 unknown function unknown function -1 31199 31393
YP_009206771.1 NC_028889_p53 hypothetical protein phrog_7613 unknown function unknown function -1 34953 35078
YP_009206731.1 NC_028889_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8559 9110
YP_009206784.1 NC_028889_p66 hypothetical protein phrog_8015 unknown function unknown function 1 40510 40791
YP_009206778.1 NC_028889_p60 hypothetical protein phrog_4652 unknown function unknown function 1 37866 38465
YP_009206761.1 NC_028889_p43 hypothetical protein phrog_3693 unknown function unknown function -1 31393 31512
YP_009206739.1 NC_028889_p21 hypothetical protein phrog_240 head protein head and packaging 1 23013 23354
YP_009206832.1 NC_028889_p114 hypothetical protein phrog_1693 unknown function unknown function 1 57944 58153
YP_009206813.1 NC_028889_p95 hypothetical protein phrog_4152 unknown function unknown function 1 51872 52000
YP_009206817.1 NC_028889_p99 hypothetical protein phrog_1545 unknown function unknown function 1 52657 52794
YP_009206797.1 NC_028889_p79 hypothetical protein phrog_3821 unknown function unknown function 1 44644 44994
YP_009206814.1 NC_028889_p96 hypothetical protein phrog_1901 unknown function unknown function 1 51997 52188
YP_009206805.1 NC_028889_p87 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 49360 50211
YP_009206789.1 NC_028889_p71 HTH DNA-binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 42396 42761
YP_009206790.1 NC_028889_p72 hypothetical protein phrog_2078 unknown function unknown function 1 42761 42916
YP_009206763.1 NC_028889_p45 hypothetical protein phrog_32925 unknown function unknown function -1 31679 31774
YP_009206804.1 NC_028889_p86 hypothetical protein phrog_2451 unknown function unknown function 1 49222 49356
YP_009206728.1 NC_028889_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7115 7519
YP_009206806.1 NC_028889_p88 hypothetical protein phrog_2080 unknown function unknown function 1 50208 50471
YP_009206819.1 NC_028889_p101 hypothetical protein phrog_2278 unknown function unknown function 1 53017 53307
YP_009206719.1 NC_028889_p1 hypothetical protein phrog_226 minor tail protein tail 1 106 561
YP_009206820.1 NC_028889_p102 hypothetical protein phrog_10901 unknown function unknown function 1 53347 53580
YP_009206725.1 NC_028889_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5897 6466
YP_009206758.1 NC_028889_p40 hypothetical protein phrog_26953 unknown function unknown function -1 30846 30962
YP_009206831.1 NC_028889_p113 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 56502 57938
YP_009206726.1 NC_028889_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6463 6792
YP_009206740.1 NC_028889_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23377 23631
YP_009206735.1 NC_028889_p17 minor tail protein phrog_732 minor tail protein tail 1 16592 17422
YP_009206829.1 NC_028889_p111 hypothetical protein phrog_1385 unknown function unknown function 1 56089 56331
YP_009206743.1 NC_028889_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25109 25306
YP_009206729.1 NC_028889_p11 major tail protein phrog_476 major tail protein tail 1 7631 8440
YP_009206828.1 NC_028889_p110 hypothetical protein phrog_1186 unknown function unknown function 1 55688 56092
YP_009206796.1 NC_028889_p78 hypothetical protein phrog_1311 unknown function unknown function 1 44511 44651
YP_009206721.1 NC_028889_p3 portal protein phrog_104 portal protein head and packaging 1 2258 3628
YP_009206812.1 NC_028889_p94 hypothetical protein phrog_647 unknown function unknown function 1 51591 51875
YP_009206747.1 NC_028889_p29 hypothetical protein phrog_747 unknown function unknown function 1 26097 26330
YP_009206765.1 NC_028889_p47 HTH binding domain phrog_5497 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32011 32208
YP_009206824.1 NC_028889_p106 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 54860 55084
YP_009206791.1 NC_028889_p73 hypothetical protein phrog_1834 unknown function unknown function 1 42913 43143