| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028889 |
Definition |
Mycobacterium phage Florinda, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
59416 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
117 |
%GC |
61.74 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009206783.1 | NC_028889_p65 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 39887 | 40492 |
| YP_009206798.1 | NC_028889_p80 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 44991 | 46736 |
| YP_009206736.1 | NC_028889_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17419 | 19956 |
| YP_009206750.1 | NC_028889_p32 | holin | phrog_443 | holin | lysis | 1 | 28535 | 28768 |
| YP_009206830.1 | NC_028889_p112 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56324 | 56485 |
| YP_009206748.1 | NC_028889_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26327 | 27520 |
| YP_009206801.1 | NC_028889_p83 | hypothetical protein | phrog_8611 | unknown function | unknown function | -1 | 47243 | 47575 |
| YP_009206809.1 | NC_028889_p91 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 50859 | 51017 |
| YP_009206723.1 | NC_028889_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4455 | 5048 |
| YP_009206744.1 | NC_028889_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25455 | 25739 |
| YP_009206774.1 | NC_028889_p56 | HTH DNA-binding domain protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 35758 | 36090 |
| YP_009206825.1 | NC_028889_p107 | hypothetical protein | phrog_35039 | unknown function | unknown function | 1 | 55142 | 55246 |
| YP_009206727.1 | NC_028889_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6799 | 7125 |
| YP_009206737.1 | NC_028889_p19 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19953 | 21839 |
| YP_009206792.1 | NC_028889_p74 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 43140 | 43385 |
| YP_009206779.1 | NC_028889_p61 | hypothetical protein | phrog_15946 | unknown function | unknown function | 1 | 38480 | 38935 |
| YP_009206818.1 | NC_028889_p100 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 52791 | 52964 |
| YP_009206815.1 | NC_028889_p97 | hypothetical protein | phrog_6540 | unknown function | unknown function | 1 | 52185 | 52481 |
| YP_009206780.1 | NC_028889_p62 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38976 | 39173 |
| YP_009206724.1 | NC_028889_p6 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5067 | 5888 |
| YP_009206733.1 | NC_028889_p15 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 13038 | 14747 |
| YP_009206762.1 | NC_028889_p44 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31512 | 31679 |
| YP_009206770.1 | NC_028889_p52 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34387 | 34836 |
| YP_009206800.1 | NC_028889_p82 | hypothetical protein | phrog_8485 | unknown function | unknown function | -1 | 46859 | 47236 |
| YP_009206785.1 | NC_028889_p67 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40870 | 41151 |
| YP_009206795.1 | NC_028889_p77 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44348 | 44518 |
| YP_009206749.1 | NC_028889_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27520 | 28521 |
| YP_009206756.1 | NC_028889_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30500 | 30595 |
| YP_009206775.1 | NC_028889_p57 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 36157 | 36951 |
| YP_009206755.1 | NC_028889_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30277 | 30510 |
| YP_009206732.1 | NC_028889_p14 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9513 | 13037 |
| YP_009206720.1 | NC_028889_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 584 | 2221 |
| YP_009206821.1 | NC_028889_p103 | hypothetical protein | phrog_10123 | unknown function | unknown function | 1 | 53577 | 53855 |
| YP_009206826.1 | NC_028889_p108 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 55253 | 55408 |
| YP_009206811.1 | NC_028889_p93 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 51421 | 51594 |
| YP_009206782.1 | NC_028889_p64 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 39732 | 39890 |
| YP_009206807.1 | NC_028889_p89 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 50468 | 50671 |
| YP_009206810.1 | NC_028889_p92 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 51063 | 51434 |
| YP_009206786.1 | NC_028889_p68 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 41148 | 41495 |
| YP_009206833.1 | NC_028889_p115 | hypothetical protein | phrog_2864 | unknown function | unknown function | 1 | 58161 | 58328 |
| YP_009206766.1 | NC_028889_p48 | hypothetical protein | phrog_5254 | unknown function | unknown function | -1 | 32209 | 32451 |
| YP_009206803.1 | NC_028889_p85 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 47777 | 49225 |
| YP_009206788.1 | NC_028889_p70 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 41899 | 42399 |
| YP_009206764.1 | NC_028889_p46 | hypothetical protein | phrog_12593 | unknown function | unknown function | -1 | 31740 | 31910 |
| YP_009206734.1 | NC_028889_p16 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14828 | 16537 |
| YP_009206753.1 | NC_028889_p35 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29383 | 30204 |
| YP_009206746.1 | NC_028889_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25889 | 26032 |
| YP_009206769.1 | NC_028889_p51 | integrase | phrog_1 | integrase | integration and excision | 1 | 33021 | 34310 |
| YP_009206834.1 | NC_028889_p116 | glycosyltransferase domain protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 58325 | 58948 |
| YP_009206835.1 | NC_028889_p117 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58948 | 59274 |
| YP_009206776.1 | NC_028889_p58 | hypothetical protein | phrog_18246 | unknown function | unknown function | 1 | 36954 | 37469 |
| YP_009206799.1 | NC_028889_p81 | hypothetical protein | phrog_6506 | Arc-like repressor | transcription regulation | -1 | 46705 | 46866 |
| YP_009206827.1 | NC_028889_p109 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 55405 | 55662 |
| YP_009206793.1 | NC_028889_p75 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43399 | 43977 |
| YP_009206777.1 | NC_028889_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37512 | 37754 |
| YP_009206802.1 | NC_028889_p84 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 47608 | 47730 |
| YP_009206794.1 | NC_028889_p76 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43974 | 44336 |
| YP_009206730.1 | NC_028889_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8559 | 9495 |
| YP_009206752.1 | NC_028889_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29136 | 29396 |
| YP_009206781.1 | NC_028889_p63 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 39217 | 39705 |
| YP_009206722.1 | NC_028889_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3615 | 4370 |
| YP_009206822.1 | NC_028889_p104 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 53858 | 54109 |
| YP_009206823.1 | NC_028889_p105 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 54106 | 54750 |
| YP_009206742.1 | NC_028889_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24279 | 25103 |
| YP_009206759.1 | NC_028889_p41 | hypothetical protein | phrog_7977 | unknown function | unknown function | -1 | 30952 | 31206 |
| YP_009206741.1 | NC_028889_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23644 | 24282 |
| YP_009206754.1 | NC_028889_p36 | hypothetical protein | phrog_8186 | unknown function | unknown function | 1 | 30206 | 30292 |
| YP_009206738.1 | NC_028889_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21836 | 22999 |
| YP_009206787.1 | NC_028889_p69 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 41495 | 41902 |
| YP_009206768.1 | NC_028889_p50 | hypothetical protein | phrog_10321 | unknown function | unknown function | -1 | 32634 | 32762 |
| YP_009206767.1 | NC_028889_p49 | hypothetical protein | phrog_25963 | unknown function | unknown function | -1 | 32465 | 32593 |
| YP_009206757.1 | NC_028889_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30606 | 30719 |
| YP_009206745.1 | NC_028889_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25746 | 25892 |
| YP_009206816.1 | NC_028889_p98 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52463 | 52657 |
| YP_009206773.1 | NC_028889_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35346 | 35633 |
| YP_009206808.1 | NC_028889_p90 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 50668 | 50862 |
| YP_009206772.1 | NC_028889_p54 | immunity repressor | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 35102 | 35452 |
| YP_009206751.1 | NC_028889_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28765 | 29139 |
| YP_009206760.1 | NC_028889_p42 | hypothetical protein | phrog_10332 | unknown function | unknown function | -1 | 31199 | 31393 |
| YP_009206771.1 | NC_028889_p53 | hypothetical protein | phrog_7613 | unknown function | unknown function | -1 | 34953 | 35078 |
| YP_009206731.1 | NC_028889_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8559 | 9110 |
| YP_009206784.1 | NC_028889_p66 | hypothetical protein | phrog_8015 | unknown function | unknown function | 1 | 40510 | 40791 |
| YP_009206778.1 | NC_028889_p60 | hypothetical protein | phrog_4652 | unknown function | unknown function | 1 | 37866 | 38465 |
| YP_009206761.1 | NC_028889_p43 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31393 | 31512 |
| YP_009206739.1 | NC_028889_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23013 | 23354 |
| YP_009206832.1 | NC_028889_p114 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57944 | 58153 |
| YP_009206813.1 | NC_028889_p95 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 51872 | 52000 |
| YP_009206817.1 | NC_028889_p99 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52657 | 52794 |
| YP_009206797.1 | NC_028889_p79 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 44644 | 44994 |
| YP_009206814.1 | NC_028889_p96 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51997 | 52188 |
| YP_009206805.1 | NC_028889_p87 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 49360 | 50211 |
| YP_009206789.1 | NC_028889_p71 | HTH DNA-binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42396 | 42761 |
| YP_009206790.1 | NC_028889_p72 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 42761 | 42916 |
| YP_009206763.1 | NC_028889_p45 | hypothetical protein | phrog_32925 | unknown function | unknown function | -1 | 31679 | 31774 |
| YP_009206804.1 | NC_028889_p86 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 49222 | 49356 |
| YP_009206728.1 | NC_028889_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7115 | 7519 |
| YP_009206806.1 | NC_028889_p88 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 50208 | 50471 |
| YP_009206819.1 | NC_028889_p101 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 53017 | 53307 |
| YP_009206719.1 | NC_028889_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 106 | 561 |
| YP_009206820.1 | NC_028889_p102 | hypothetical protein | phrog_10901 | unknown function | unknown function | 1 | 53347 | 53580 |
| YP_009206725.1 | NC_028889_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5897 | 6466 |
| YP_009206758.1 | NC_028889_p40 | hypothetical protein | phrog_26953 | unknown function | unknown function | -1 | 30846 | 30962 |
| YP_009206831.1 | NC_028889_p113 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56502 | 57938 |
| YP_009206726.1 | NC_028889_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6463 | 6792 |
| YP_009206740.1 | NC_028889_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23377 | 23631 |
| YP_009206735.1 | NC_028889_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16592 | 17422 |
| YP_009206829.1 | NC_028889_p111 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 56089 | 56331 |
| YP_009206743.1 | NC_028889_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25109 | 25306 |
| YP_009206729.1 | NC_028889_p11 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7631 | 8440 |
| YP_009206828.1 | NC_028889_p110 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 55688 | 56092 |
| YP_009206796.1 | NC_028889_p78 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44511 | 44651 |
| YP_009206721.1 | NC_028889_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2258 | 3628 |
| YP_009206812.1 | NC_028889_p94 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51591 | 51875 |
| YP_009206747.1 | NC_028889_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26097 | 26330 |
| YP_009206765.1 | NC_028889_p47 | HTH binding domain | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32011 | 32208 |
| YP_009206824.1 | NC_028889_p106 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 54860 | 55084 |
| YP_009206791.1 | NC_028889_p73 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 42913 | 43143 |