Genomic map of Streptomyces phage Caliburn (NC_028892)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028892
Definition
Streptomyces phage Caliburn, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus.
DB of origin
REFSEQ
Length
49949
Host Name
Streptomyces griseus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
66.19
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009207106.1 NC_028892_p9 scaffold protein phrog_233 head scaffolding protein head and packaging 1 6616 7161
YP_009207117.1 NC_028892_p20 hypothetical protein phrog_538 minor tail protein tail 1 15834 17048
YP_009207145.1 NC_028892_p48 serine integrase phrog_95 integrase integration and excision 1 34183 35505
YP_009207116.1 NC_028892_p19 hypothetical protein phrog_33 distal tail protein Dit tail 1 14973 15830
YP_009207124.1 NC_028892_p27 hypothetical protein phrog_4092 unknown function unknown function 1 21914 22174
YP_009207111.1 NC_028892_p14 hypothetical protein phrog_123 tail terminator connector 1 9557 10060
YP_009207118.1 NC_028892_p21 hypothetical protein phrog_1276 unknown function unknown function 1 17052 17360
YP_009207134.1 NC_028892_p37 hypothetical protein phrog_4673 unknown function unknown function 1 27396 27548
YP_009207122.1 NC_028892_p25 hypothetical protein phrog_3534 unknown function unknown function 1 20574 20927
YP_009207148.1 NC_028892_p51 hypothetical protein phrog_5971 unknown function unknown function -1 36642 36779
YP_009207107.1 NC_028892_p10 major capsid protein phrog_283 major head protein head and packaging 1 7231 8304
YP_009207130.1 NC_028892_p33 hypothetical protein phrog_1288 unknown function unknown function 1 25175 25612
YP_009207115.1 NC_028892_p18 tapemeasure phrog_305 tail length tape measure protein tail 1 11649 14969
YP_009207163.1 NC_028892_p66 hypothetical protein phrog_4239 unknown function unknown function -1 45372 45791
YP_009207165.1 NC_028892_p68 hypothetical protein phrog_2355 unknown function unknown function -1 46249 46848
YP_009207112.1 NC_028892_p15 hypothetical protein phrog_117 major tail protein tail 1 10075 10818
YP_009207128.1 NC_028892_p31 exonuclease phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 23510 24487
YP_009207133.1 NC_028892_p36 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 27037 27399
YP_009207102.1 NC_028892_p5 hypothetical protein phrog_226 minor tail protein tail 1 1936 2361
YP_009207147.1 NC_028892_p50 hypothetical protein phrog_4071 unknown function unknown function -1 36364 36639
YP_009207144.1 NC_028892_p47 Lsr2 phrog_6509 Lsr2-like DNA bridging protein DNA, RNA and nucleotide metabolism 1 33908 34126
YP_009207127.1 NC_028892_p30 hypothetical protein phrog_5250 unknown function unknown function 1 23145 23513
YP_009207146.1 NC_028892_p49 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 35654 36367
YP_009207132.1 NC_028892_p35 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 26213 26968
YP_009207140.1 NC_028892_p43 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 29196 30386
YP_009207149.1 NC_028892_p52 DNA polymerase III subunit alpha phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 36861 40340
YP_009207143.1 NC_028892_p46 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 31771 33861
YP_009207110.1 NC_028892_p13 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 9159 9557
YP_009207109.1 NC_028892_p12 head-tail adaptor phrog_320 head closure Hc1 connector 1 8824 9159
YP_009207114.1 NC_028892_p17 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 10930 11253
YP_009207126.1 NC_028892_p29 immunity repressor phrog_3929 transcriptional repressor transcription regulation 1 22576 23028
YP_009207150.1 NC_028892_p53 hypothetical protein phrog_3424 unknown function unknown function -1 40337 40573
YP_009207162.1 NC_028892_p65 hypothetical protein phrog_3908 unknown function unknown function -1 45142 45369
YP_009207153.1 NC_028892_p56 dNMP kinase phrog_139 deoxynucleoside monophosphate kinase other -1 41514 42104
YP_009207120.1 NC_028892_p23 hypothetical protein phrog_4817 unknown function unknown function 1 18713 19222
YP_009207121.1 NC_028892_p24 hypothetical protein phrog_988 tail protein tail 1 19297 20574
YP_009207129.1 NC_028892_p32 hypothetical protein phrog_3912 unknown function unknown function 1 24615 25115
YP_009207160.1 NC_028892_p63 hypothetical protein phrog_4867 unknown function unknown function -1 44110 44475
YP_009207142.1 NC_028892_p45 hypothetical protein phrog_4123 unknown function unknown function 1 31291 31668
YP_009207138.1 NC_028892_p41 hypothetical protein phrog_6217 unknown function unknown function 1 28806 28979
YP_009207137.1 NC_028892_p40 hypothetical protein phrog_4022 unknown function unknown function 1 28462 28809
YP_009207166.1 NC_028892_p69 hypothetical protein phrog_4313 unknown function unknown function -1 46923 47741
YP_009207125.1 NC_028892_p28 hypothetical protein phrog_4061 unknown function unknown function -1 22230 22490
YP_009207108.1 NC_028892_p11 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 8375 8827
YP_009207098.1 NC_028892_p1 hypothetical protein phrog_4207 unknown function unknown function -1 91 297
YP_009207136.1 NC_028892_p39 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 27959 28465
YP_009207131.1 NC_028892_p34 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 25785 26156
YP_009207139.1 NC_028892_p42 hypothetical protein phrog_3979 unknown function unknown function 1 29015 29203
YP_009207158.1 NC_028892_p61 hypothetical protein phrog_4785 unknown function unknown function -1 43429 43704
YP_009207164.1 NC_028892_p67 hypothetical protein phrog_6619 unknown function unknown function -1 45909 46166
YP_009207099.1 NC_028892_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 739 1053
YP_009207159.1 NC_028892_p62 hypothetical protein phrog_21379 unknown function unknown function -1 43760 43990
YP_009207154.1 NC_028892_p57 hypothetical protein phrog_5209 unknown function unknown function -1 42101 42412
YP_009207113.1 NC_028892_p16 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 10930 11645
YP_009207104.1 NC_028892_p7 portal protein phrog_104 portal protein head and packaging 1 4055 5503
YP_009207103.1 NC_028892_p6 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2382 4028
YP_009207152.1 NC_028892_p55 hypothetical protein phrog_4024 unknown function unknown function -1 41092 41469
YP_009207169.1 NC_028892_p72 hypothetical protein phrog_2563 unknown function unknown function -1 48615 49001
YP_009207156.1 NC_028892_p59 hypothetical protein phrog_11825 unknown function unknown function -1 42683 42871
YP_009207100.1 NC_028892_p3 hypothetical protein phrog_3555 unknown function unknown function 1 1437 1667
YP_009207119.1 NC_028892_p22 hypothetical protein phrog_4013 unknown function unknown function 1 17360 18700
YP_009207168.1 NC_028892_p71 hypothetical protein phrog_4485 unknown function unknown function -1 48372 48518
YP_009207155.1 NC_028892_p58 hypothetical protein phrog_3991 unknown function unknown function -1 42409 42690
YP_009207141.1 NC_028892_p44 hypothetical protein phrog_351 RNA polymerase sigma factor transcription regulation 1 30419 31294
YP_009207123.1 NC_028892_p26 endolysin phrog_1493 endolysin lysis 1 20958 21911
YP_009207151.1 NC_028892_p54 hypothetical protein phrog_3965 unknown function unknown function -1 40587 41018
YP_009207105.1 NC_028892_p8 hypothetical protein phrog_193 head maturation protease head and packaging 1 5500 6612
YP_009207135.1 NC_028892_p38 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism 1 27535 27966
YP_009207161.1 NC_028892_p64 HNH domain protein phrog_4842 HNH endonuclease DNA, RNA and nucleotide metabolism -1 44569 45033
YP_009207157.1 NC_028892_p60 hypothetical protein phrog_2650 unknown function unknown function -1 42885 43337
YP_009207167.1 NC_028892_p70 hypothetical protein phrog_3994 unknown function unknown function -1 47855 48280
YP_009207101.1 NC_028892_p4 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 1673 1921