Genomic map of Vibrio phage phi 3 (NC_028895)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028895
Definition
Vibrio phage phi 3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Ermolyevavirinae; Jesfedecavirus; Vibrio virus phi3.
DB of origin
REFSEQ
Length
116138
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
156
%GC
42.82
Number of singletons
7
Number of paralogs
13

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009207580.1 NC_028895_p115 hypothetical protein phrog_4258 unknown function unknown function 1 72656 73006
YP_009207615.1 NC_028895_p150 hypothetical protein phrog_26987 unknown function unknown function -1 111983 112279
YP_009207532.1 NC_028895_p67 hypothetical protein phrog_37428 unknown function unknown function -1 37844 38119
YP_009207517.1 NC_028895_p52 hypothetical protein phrog_464 unknown function unknown function -1 31590 31853
YP_009207602.1 NC_028895_p137 hypothetical protein phrog_442 head-tail adaptor connector -1 99447 99989
YP_009207560.1 NC_028895_p95 hypothetical protein phrog_38658 unknown function unknown function 1 54525 54854
YP_009207527.1 NC_028895_p62 hypothetical protein phrog_10957 unknown function unknown function -1 35604 35891
YP_009207593.1 NC_028895_p128 hypothetical protein phrog_1302 distal tail protein tail -1 90316 90936
YP_009207491.1 NC_028895_p26 hypothetical protein phrog_31841 unknown function unknown function -1 15633 15866
YP_009207588.1 NC_028895_p123 hypothetical protein phrog_35338 unknown function unknown function -1 78928 79995
YP_009207605.1 NC_028895_p140 hypothetical protein phrog_16166 unknown function unknown function -1 102051 102299
YP_009207523.1 NC_028895_p58 hypothetical protein phrog_37792 unknown function unknown function -1 34052 34204
YP_009207619.1 NC_028895_p154 hypothetical protein phrog_11598 unknown function unknown function 1 114525 114905
YP_009207562.1 NC_028895_p97 hypothetical protein phrog_36125 unknown function unknown function 1 58737 58979
YP_009207519.1 NC_028895_p54 hypothetical protein phrog_2586 unknown function unknown function -1 32022 32471
YP_009207476.1 NC_028895_p11 hypothetical protein phrog_15257 unknown function unknown function 1 6751 6996
YP_009207587.1 NC_028895_p122 deoxyUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 78433 78885
YP_009207566.1 NC_028895_p101 hypothetical protein phrog_3696 unknown function unknown function 1 60887 61201
YP_009207540.1 NC_028895_p75 hypothetical protein phrog_16144 unknown function unknown function -1 42263 42445
YP_009207582.1 NC_028895_p117 hypothetical protein phrog_15738 unknown function unknown function 1 73876 74244
YP_009207548.1 NC_028895_p83 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 45334 45810
YP_009207555.1 NC_028895_p90 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 50512 50742
YP_009207561.1 NC_028895_p96 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 55958 58750
YP_009207614.1 NC_028895_p149 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 111402 111893
YP_009207487.1 NC_028895_p22 hypothetical protein phrog_29327 unknown function unknown function -1 14012 14359
YP_009207470.1 NC_028895_p5 hypothetical protein phrog_26987 unknown function unknown function -1 3614 3910
YP_009207568.1 NC_028895_p103 hypothetical protein phrog_16618 unknown function unknown function 1 61523 61855
YP_009207572.1 NC_028895_p107 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 63347 63919
YP_009207571.1 NC_028895_p106 NAD-dependent DNA ligase subunit A phrog_13916 DNA ligase DNA, RNA and nucleotide metabolism 1 63087 63308
YP_009207490.1 NC_028895_p25 hypothetical protein singleton unknown function unknown function -1 15389 15652
YP_009207609.1 NC_028895_p144 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 105406 105882
YP_009207545.1 NC_028895_p80 hypothetical protein phrog_38644 unknown function unknown function -1 44402 44611
YP_009207534.1 NC_028895_p69 hypothetical protein phrog_17966 unknown function unknown function -1 38631 38822
YP_009207570.1 NC_028895_p105 hypothetical protein phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 62123 63085
YP_009207511.1 NC_028895_p46 holin phrog_860 holin lysis -1 27287 27955
YP_009207530.1 NC_028895_p65 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 36655 37518
YP_009207503.1 NC_028895_p38 hypothetical protein phrog_17052 unknown function unknown function -1 23417 23791
YP_009207525.1 NC_028895_p60 hypothetical protein phrog_36667 unknown function unknown function -1 34963 35328
YP_009207564.1 NC_028895_p99 D2 protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 59570 60412
YP_009207479.1 NC_028895_p14 hypothetical protein singleton unknown function unknown function -1 10216 10716
YP_009207538.1 NC_028895_p73 hypothetical protein phrog_13267 unknown function unknown function -1 41449 41604
YP_009207502.1 NC_028895_p37 hypothetical protein singleton unknown function unknown function -1 22828 23337
YP_009207567.1 NC_028895_p102 hypothetical protein phrog_4053 transcriptional regulator transcription regulation 1 61185 61490
YP_009207469.1 NC_028895_p4 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 3033 3524
YP_009207563.1 NC_028895_p98 hypothetical protein phrog_31186 unknown function unknown function 1 59231 59524
YP_009207471.1 NC_028895_p6 hypothetical protein phrog_22349 unknown function unknown function 1 4746 5105
YP_009207546.1 NC_028895_p81 hypothetical protein phrog_15847 unknown function unknown function -1 44611 44886
YP_009207603.1 NC_028895_p138 major head protein precursor phrog_10 major head protein head and packaging -1 100040 101449
YP_009207477.1 NC_028895_p12 hypothetical protein phrog_16854 unknown function unknown function -1 8771 9133
YP_009207558.1 NC_028895_p93 hypothetical protein phrog_28742 unknown function unknown function -1 52418 52915
YP_009207486.1 NC_028895_p21 hypothetical protein phrog_2087 unknown function unknown function -1 12858 13973
YP_009207488.1 NC_028895_p23 hypothetical protein phrog_28076 unknown function unknown function -1 14356 14829
YP_009207506.1 NC_028895_p41 hypothetical protein phrog_19681 unknown function unknown function -1 24675 24896
YP_009207608.1 NC_028895_p143 terminase large subunit phrog_2 terminase large subunit head and packaging -1 104084 105406
YP_009207591.1 NC_028895_p126 tail protein phrog_3890 straight fibre tail protein tail -1 85239 87467
YP_009207529.1 NC_028895_p64 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 36190 36645
YP_009207598.1 NC_028895_p133 minor tail protein phrog_3889 base plate tail tube protein tail -1 95818 96702
YP_009207543.1 NC_028895_p78 hypothetical protein phrog_4586 unknown function unknown function -1 43722 43958
YP_009207536.1 NC_028895_p71 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 39329 39733
YP_009207553.1 NC_028895_p88 hypothetical protein phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 47789 49486
YP_009207616.1 NC_028895_p151 hypothetical protein phrog_22349 unknown function unknown function 1 113115 113474
YP_009207576.1 NC_028895_p111 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 67026 67916
YP_009207584.1 NC_028895_p119 exonuclease subunit 2 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 75210 77081
YP_009207595.1 NC_028895_p130 hypothetical protein phrog_15693 unknown function unknown function -1 94187 94942
YP_009207573.1 NC_028895_p108 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 64008 64799
YP_009207498.1 NC_028895_p33 hypothetical protein phrog_37195 unknown function unknown function -1 20344 20925
YP_009207499.1 NC_028895_p34 RNA ligase/tail attachment protein singleton unknown function unknown function -1 21016 21513
YP_009207472.1 NC_028895_p7 hypothetical protein phrog_23400 unknown function unknown function 1 5120 5560
YP_009207512.1 NC_028895_p47 hypothetical protein phrog_22216 unknown function unknown function -1 28155 29855
YP_009207495.1 NC_028895_p30 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other -1 18265 19170
YP_009207537.1 NC_028895_p72 hypothetical protein phrog_5032 unknown function unknown function -1 40756 41277
YP_009207589.1 NC_028895_p124 hypothetical protein phrog_745 unknown function unknown function -1 79995 84449
YP_009207611.1 NC_028895_p146 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 108502 109131
YP_009207607.1 NC_028895_p142 hypothetical protein phrog_3497 unknown function unknown function -1 103520 104002
YP_009207508.1 NC_028895_p43 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism -1 25245 26285
YP_009207494.1 NC_028895_p29 hypothetical protein phrog_335 phosphatase other -1 17791 18264
YP_009207474.1 NC_028895_p9 hypothetical protein phrog_11598 unknown function unknown function 1 6156 6536
YP_009207569.1 NC_028895_p104 hypothetical protein singleton unknown function unknown function 1 61857 62105
YP_009207496.1 NC_028895_p31 hypothetical protein phrog_3600 antimicrobial peptide resistance and lipid A acylation protein PagP moron, auxiliary metabolic gene and host takeover -1 19244 19705
YP_009207610.1 NC_028895_p145 hypothetical protein phrog_16456 unknown function unknown function 1 106029 107903
YP_009207577.1 NC_028895_p112 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 68005 70587
YP_009207482.1 NC_028895_p17 hypothetical protein phrog_19721 unknown function unknown function -1 11339 11536
YP_009207522.1 NC_028895_p57 hypothetical protein phrog_36953 unknown function unknown function -1 33521 33898
YP_009207586.1 NC_028895_p121 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 77550 78446
YP_009207559.1 NC_028895_p94 hypothetical protein phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 53103 54263
YP_009207484.1 NC_028895_p19 hypothetical protein phrog_7819 tail length tape measure protein tail -1 11771 12226
YP_009207466.1 NC_028895_p1 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 133 762
YP_009207505.1 NC_028895_p40 hypothetical protein phrog_4215 unknown function unknown function -1 24307 24687
YP_009207478.1 NC_028895_p13 hypothetical protein phrog_28145 unknown function unknown function -1 9146 10204
YP_009207524.1 NC_028895_p59 hypothetical protein phrog_28053 unknown function unknown function -1 34215 34487
YP_009207515.1 NC_028895_p50 hypothetical protein phrog_812 Rz-like spanin lysis -1 30966 31250
YP_009207489.1 NC_028895_p24 hypothetical protein phrog_36064 unknown function unknown function -1 14826 15314
YP_009207528.1 NC_028895_p63 hypothetical protein phrog_33265 unknown function unknown function -1 35888 36127
YP_009207613.1 NC_028895_p148 A1 protein phrog_1745 DNA transfer protein other -1 109553 111265
YP_009207504.1 NC_028895_p39 hypothetical protein phrog_18966 unknown function unknown function -1 23975 24199
YP_009207510.1 NC_028895_p45 peptidase M15 family protein phrog_894 endolysin lysis -1 26904 27287
YP_009207620.1 NC_028895_p155 hypothetical protein phrog_23543 unknown function unknown function 1 114905 115117
YP_009207592.1 NC_028895_p127 tail-3 protein phrog_31 central tail fiber J tail -1 87464 90319
YP_009207597.1 NC_028895_p132 hypothetical protein phrog_313 Tail assembly chaperone tail -1 95387 95821
YP_009207606.1 NC_028895_p141 portal protein phrog_12 portal protein head and packaging -1 102296 103516
YP_009207468.1 NC_028895_p3 A1 protein phrog_1745 DNA transfer protein other -1 1184 2896
YP_009207475.1 NC_028895_p10 hypothetical protein phrog_23543 unknown function unknown function 1 6536 6748
YP_009207513.1 NC_028895_p48 tail protein phrog_16185 tail protein tail -1 29866 30195
YP_009207518.1 NC_028895_p53 hypothetical protein phrog_34366 unknown function unknown function -1 31843 32025
YP_009207480.1 NC_028895_p15 hypothetical protein singleton unknown function unknown function -1 10835 10999
YP_009207604.1 NC_028895_p139 prohead protease phrog_80 head maturation protease head and packaging -1 101453 102064
YP_009207547.1 NC_028895_p82 hypothetical protein phrog_30352 unknown function unknown function -1 44980 45252
YP_009207594.1 NC_028895_p129 pore-forming tail tip protein phrog_3779 tail length tape measure protein tail -1 91100 94174
YP_009207520.1 NC_028895_p55 hypothetical protein phrog_37007 unknown function unknown function -1 32615 32947
YP_009207590.1 NC_028895_p125 hypothetical protein phrog_15373 L-shaped tail fiber protein assembly tail -1 84450 85232
YP_009207533.1 NC_028895_p68 hypothetical protein phrog_23579 unknown function unknown function -1 38125 38349
YP_009207596.1 NC_028895_p131 hypothetical protein phrog_3914 tail assembly chaperone tail -1 95026 95328
YP_009207500.1 NC_028895_p35 calcineurin-like phosphoesterase family protein phrog_246 NinI-like serine-threonine phosphatase other -1 21588 22331
YP_009207554.1 NC_028895_p89 hypothetical protein phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 49479 50522
YP_009207497.1 NC_028895_p32 hypothetical protein phrog_19575 unknown function unknown function -1 19716 20327
YP_009207557.1 NC_028895_p92 hypothetical protein phrog_4218 anaerobic ribonucleoside reductase large subunit DNA, RNA and nucleotide metabolism -1 51246 52292
YP_009207509.1 NC_028895_p44 hypothetical protein phrog_990 metal-dependent phosphohydrolase other -1 26352 26816
YP_009207581.1 NC_028895_p116 D11 protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 73017 73820
YP_009207575.1 NC_028895_p110 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 65615 67039
YP_009207485.1 NC_028895_p20 hypothetical protein phrog_1383 virion structural protein head and packaging -1 12298 12861
YP_009207552.1 NC_028895_p87 hypothetical protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism -1 47195 47671
YP_009207481.1 NC_028895_p16 hypothetical protein phrog_35509 unknown function unknown function -1 11091 11330
YP_009207473.1 NC_028895_p8 hypothetical protein phrog_11691 unknown function unknown function 1 5662 6159
YP_009207601.1 NC_028895_p136 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 98684 99445
YP_009207617.1 NC_028895_p152 hypothetical protein phrog_23400 unknown function unknown function 1 113489 113929
YP_009207612.1 NC_028895_p147 hypothetical protein phrog_22145 unknown function unknown function -1 109206 109481
YP_009207578.1 NC_028895_p113 hypothetical protein phrog_4386 unknown function unknown function 1 70667 71176
YP_009207492.1 NC_028895_p27 hypothetical protein phrog_31841 unknown function unknown function -1 15871 16107
YP_009207600.1 NC_028895_p135 hypothetical protein phrog_3907 tail terminator connector -1 98196 98681
YP_009207507.1 NC_028895_p42 hypothetical protein phrog_3880 unknown function unknown function -1 24874 25176
YP_009207565.1 NC_028895_p100 D3 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 60426 60848
YP_009207549.1 NC_028895_p84 hypothetical protein phrog_37814 unknown function unknown function -1 45803 46018
YP_009207535.1 NC_028895_p70 hypothetical protein phrog_4852 unknown function unknown function -1 39196 39342
YP_009207544.1 NC_028895_p79 hypothetical protein phrog_16554 unknown function unknown function -1 44140 44424
YP_009207551.1 NC_028895_p86 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other -1 46523 47176
YP_009207467.1 NC_028895_p2 hypothetical protein phrog_22145 unknown function unknown function -1 837 1112
YP_009207556.1 NC_028895_p91 hypothetical protein phrog_111 DNA methyltransferase other -1 50746 51249
YP_009207493.1 NC_028895_p28 nicotinate phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other -1 16112 17725
YP_009207574.1 NC_028895_p109 D5 protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 64792 65559
YP_009207579.1 NC_028895_p114 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 71173 72531
YP_009207621.1 NC_028895_p156 hypothetical protein phrog_15257 unknown function unknown function 1 115120 115365
YP_009207550.1 NC_028895_p85 hypothetical protein phrog_1017 unknown function unknown function -1 45993 46433
YP_009207539.1 NC_028895_p74 hypothetical protein phrog_15472 unknown function unknown function -1 41956 42249
YP_009207483.1 NC_028895_p18 hypothetical protein phrog_33362 unknown function unknown function -1 11542 11781
YP_009207585.1 NC_028895_p120 D14 protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 77074 77553
YP_009207618.1 NC_028895_p153 hypothetical protein phrog_11691 unknown function unknown function 1 114031 114528
YP_009207521.1 NC_028895_p56 hypothetical protein phrog_34870 unknown function unknown function -1 32940 33143
YP_009207501.1 NC_028895_p36 hypothetical protein singleton unknown function unknown function -1 22415 22819
YP_009207516.1 NC_028895_p51 hypothetical protein phrog_739 Rz-like spanin lysis -1 31247 31597
YP_009207541.1 NC_028895_p76 hypothetical protein phrog_1040 peptidase HslV family other -1 42518 43039
YP_009207583.1 NC_028895_p118 recombination endonuclease subunit D12 phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 74237 75220
YP_009207599.1 NC_028895_p134 major tail protein phrog_3575 major tail protein tail -1 96709 98172
YP_009207526.1 NC_028895_p61 hypothetical protein phrog_12809 unknown function unknown function -1 35330 35632
YP_009207542.1 NC_028895_p77 exodeoxyribonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 43036 43728
YP_009207531.1 NC_028895_p66 hypothetical protein phrog_21860 unknown function unknown function -1 37544 37750
YP_009207514.1 NC_028895_p49 hydrolase phrog_139 deoxynucleoside monophosphate kinase other -1 30316 30969