Genomic map of Mycobacterium phage Chadwick (NC_028897)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028897
Definition
Mycobacterium phage Chadwick, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
49421
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
88
%GC
59.78
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009207687.1 NC_028897_p22 tape measure protein phrog_305 tail length tape measure protein tail 1 15059 17872
YP_009207667.1 NC_028897_p2 tail subunit phrog_226 minor tail protein tail 1 838 1287
YP_009207693.1 NC_028897_p28 hypothetical protein phrog_2683 minor tail protein tail 1 21832 23214
YP_009207694.1 NC_028897_p29 hypothetical protein phrog_2235 minor tail protein tail 1 23222 23548
YP_009207753.1 NC_028897_p88 hypothetical protein phrog_3471 unknown function unknown function -1 47786 48037
YP_009207677.1 NC_028897_p12 capsid scaffold protein phrog_233 head scaffolding protein head and packaging 1 10059 10571
YP_009207717.1 NC_028897_p52 hypothetical protein phrog_1167 phosphofructokinase other -1 36268 36756
YP_009207700.1 NC_028897_p35 hypothetical protein phrog_980 unknown function unknown function -1 26717 26926
YP_009207668.1 NC_028897_p3 tail subunit phrog_1260 minor tail protein tail 1 1394 2356
YP_009207674.1 NC_028897_p9 hypothetical protein phrog_9 terminase large subunit head and packaging 1 5983 7734
YP_009207716.1 NC_028897_p51 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 35501 36271
YP_009207691.1 NC_028897_p26 hypothetical protein phrog_981 minor tail protein tail 1 21216 21518
YP_009207697.1 NC_028897_p32 DNA binding domain protein phrog_733 excisionase integration and excision 1 25547 25975
YP_009207706.1 NC_028897_p41 hypothetical protein phrog_19744 unknown function unknown function -1 30219 30335
YP_009207734.1 NC_028897_p69 hypothetical protein phrog_642 unknown function unknown function -1 41905 42207
YP_009207682.1 NC_028897_p17 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 12481 12894
YP_009207727.1 NC_028897_p62 hypothetical protein phrog_6893 unknown function unknown function -1 39862 39945
YP_009207708.1 NC_028897_p43 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30712 30975
YP_009207749.1 NC_028897_p84 ArdA-like antirestriction protein phrog_2059 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 46644 47186
YP_009207685.1 NC_028897_p20 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 14258 15054
YP_009207725.1 NC_028897_p60 resolvase phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39317 39781
YP_009207704.1 NC_028897_p39 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28191 30056
YP_009207684.1 NC_028897_p19 major tail subunit phrog_117 major tail protein tail 1 13318 14148
YP_009207702.1 NC_028897_p37 hypothetical protein phrog_5282 unknown function unknown function -1 27419 27703
YP_009207701.1 NC_028897_p36 hypothetical protein phrog_383 unknown function unknown function -1 26983 27429
YP_009207726.1 NC_028897_p61 hypothetical protein phrog_4539 unknown function unknown function -1 39771 39869
YP_009207688.1 NC_028897_p23 tail subunit phrog_106 minor tail protein tail 1 17936 18949
YP_009207742.1 NC_028897_p77 hypothetical protein phrog_6322 unknown function unknown function -1 45054 45206
YP_009207735.1 NC_028897_p70 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42211 43026
YP_009207690.1 NC_028897_p25 tail subunit phrog_352 minor tail protein tail 1 20759 21223
YP_009207752.1 NC_028897_p87 hypothetical protein phrog_9783 unknown function unknown function -1 47641 47727
YP_009207739.1 NC_028897_p74 hypothetical protein phrog_1178 unknown function unknown function -1 44401 44643
YP_009207728.1 NC_028897_p63 hypothetical protein phrog_1498 unknown function unknown function -1 39942 40094
YP_009207713.1 NC_028897_p48 hypothetical protein phrog_1454 unknown function unknown function -1 34527 34763
YP_009207669.1 NC_028897_p4 hypothetical protein phrog_1197 tail protein tail 1 2353 3402
YP_009207724.1 NC_028897_p59 hypothetical protein phrog_397 unknown function unknown function -1 38952 39218
YP_009207731.1 NC_028897_p66 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40659 41465
YP_009207675.1 NC_028897_p10 portal protein phrog_104 portal protein head and packaging 1 7734 9167
YP_009207680.1 NC_028897_p15 hypothetical protein phrog_2348 unknown function unknown function 1 11979 12122
YP_009207750.1 NC_028897_p85 hypothetical protein phrog_5927 unknown function unknown function -1 47208 47420
YP_009207707.1 NC_028897_p42 hypothetical protein phrog_762 unknown function unknown function -1 30335 30715
YP_009207721.1 NC_028897_p56 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37701 38363
YP_009207710.1 NC_028897_p45 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 31728 32252
YP_009207670.1 NC_028897_p5 hypothetical protein phrog_356 minor tail protein tail 1 3406 4047
YP_009207714.1 NC_028897_p49 hypothetical protein phrog_5897 unknown function unknown function -1 34750 34851
YP_009207740.1 NC_028897_p75 hypothetical protein phrog_5066 unknown function unknown function -1 44640 44906
YP_009207705.1 NC_028897_p40 hypothetical protein singleton unknown function unknown function -1 30064 30219
YP_009207751.1 NC_028897_p86 hypothetical protein phrog_1445 unknown function unknown function -1 47460 47540
YP_009207709.1 NC_028897_p44 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 30968 31672
YP_009207748.1 NC_028897_p83 hypothetical protein phrog_2124 unknown function unknown function -1 46487 46627
YP_009207696.1 NC_028897_p31 integrase phrog_95 integrase integration and excision -1 23830 25311
YP_009207712.1 NC_028897_p47 hypothetical protein phrog_499 unknown function unknown function -1 34357 34527
YP_009207743.1 NC_028897_p78 hypothetical protein phrog_5561 unknown function unknown function -1 45219 45398
YP_009207744.1 NC_028897_p79 hypothetical protein phrog_24757 unknown function unknown function -1 45395 45568
YP_009207723.1 NC_028897_p58 hypothetical protein phrog_5993 unknown function unknown function -1 38585 38932
YP_009207673.1 NC_028897_p8 lysin B phrog_102 endolysin lysis 1 5150 5959
YP_009207738.1 NC_028897_p73 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 44120 44404
YP_009207698.1 NC_028897_p33 cytidine deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 26075 26587
YP_009207681.1 NC_028897_p16 hypothetical protein phrog_320 head closure Hc1 connector 1 12119 12481
YP_009207683.1 NC_028897_p18 hypothetical protein phrog_123 tail terminator connector 1 12895 13302
YP_009207715.1 NC_028897_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 34851 35516
YP_009207672.1 NC_028897_p7 hypothetical protein phrog_774 unknown function unknown function 1 4941 5153
YP_009207676.1 NC_028897_p11 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9164 10003
YP_009207678.1 NC_028897_p13 major capsid protein phrog_10 major head protein head and packaging 1 10598 11539
YP_009207689.1 NC_028897_p24 tail subunit phrog_110 minor tail protein tail 1 18946 20745
YP_009207729.1 NC_028897_p64 hypothetical protein phrog_8372 unknown function unknown function -1 40091 40264
YP_009207732.1 NC_028897_p67 hypothetical protein phrog_2903 unknown function unknown function -1 41452 41682
YP_009207686.1 NC_028897_p21 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 14258 14638
YP_009207671.1 NC_028897_p6 lysin A phrog_1512 endolysin lysis 1 4240 4944
YP_009207730.1 NC_028897_p65 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40261 40650
YP_009207722.1 NC_028897_p57 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38173 38583
YP_009207719.1 NC_028897_p54 hypothetical protein phrog_5242 unknown function unknown function -1 37151 37420
YP_009207720.1 NC_028897_p55 hypothetical protein phrog_5270 unknown function unknown function -1 37417 37704
YP_009207711.1 NC_028897_p46 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32278 34305
YP_009207741.1 NC_028897_p76 hypothetical protein singleton unknown function unknown function -1 44903 45052
YP_009207718.1 NC_028897_p53 hypothetical protein phrog_4195 unknown function unknown function -1 36753 37154
YP_009207745.1 NC_028897_p80 hypothetical protein phrog_5476 unknown function unknown function -1 45570 45911
YP_009207679.1 NC_028897_p14 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 11608 11982
YP_009207692.1 NC_028897_p27 hypothetical protein phrog_404 minor tail protein tail 1 21515 21835
YP_009207747.1 NC_028897_p82 hypothetical protein phrog_2124 unknown function unknown function -1 46234 46383
YP_009207666.1 NC_028897_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 501 800
YP_009207746.1 NC_028897_p81 hypothetical protein singleton unknown function unknown function -1 45908 46012
YP_009207733.1 NC_028897_p68 hypothetical protein phrog_520 unknown function unknown function -1 41679 41930
YP_009207703.1 NC_028897_p38 hypothetical protein phrog_2650 unknown function unknown function -1 27700 28143
YP_009207737.1 NC_028897_p72 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 43326 43856
YP_009207695.1 NC_028897_p30 hypothetical protein phrog_2697 unknown function unknown function -1 23600 23833
YP_009207736.1 NC_028897_p71 hypothetical protein phrog_5957 unknown function unknown function -1 43023 43310
YP_009207699.1 NC_028897_p34 hypothetical protein phrog_15643 unknown function unknown function -1 26574 26717