| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028897 |
Definition |
Mycobacterium phage Chadwick, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
49421 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
59.78 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009207687.1 | NC_028897_p22 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15059 | 17872 |
| YP_009207667.1 | NC_028897_p2 | tail subunit | phrog_226 | minor tail protein | tail | 1 | 838 | 1287 |
| YP_009207693.1 | NC_028897_p28 | hypothetical protein | phrog_2683 | minor tail protein | tail | 1 | 21832 | 23214 |
| YP_009207694.1 | NC_028897_p29 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 23222 | 23548 |
| YP_009207753.1 | NC_028897_p88 | hypothetical protein | phrog_3471 | unknown function | unknown function | -1 | 47786 | 48037 |
| YP_009207677.1 | NC_028897_p12 | capsid scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10059 | 10571 |
| YP_009207717.1 | NC_028897_p52 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 36268 | 36756 |
| YP_009207700.1 | NC_028897_p35 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 26717 | 26926 |
| YP_009207668.1 | NC_028897_p3 | tail subunit | phrog_1260 | minor tail protein | tail | 1 | 1394 | 2356 |
| YP_009207674.1 | NC_028897_p9 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 5983 | 7734 |
| YP_009207716.1 | NC_028897_p51 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35501 | 36271 |
| YP_009207691.1 | NC_028897_p26 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 21216 | 21518 |
| YP_009207697.1 | NC_028897_p32 | DNA binding domain protein | phrog_733 | excisionase | integration and excision | 1 | 25547 | 25975 |
| YP_009207706.1 | NC_028897_p41 | hypothetical protein | phrog_19744 | unknown function | unknown function | -1 | 30219 | 30335 |
| YP_009207734.1 | NC_028897_p69 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 41905 | 42207 |
| YP_009207682.1 | NC_028897_p17 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 12481 | 12894 |
| YP_009207727.1 | NC_028897_p62 | hypothetical protein | phrog_6893 | unknown function | unknown function | -1 | 39862 | 39945 |
| YP_009207708.1 | NC_028897_p43 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30712 | 30975 |
| YP_009207749.1 | NC_028897_p84 | ArdA-like antirestriction protein | phrog_2059 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | -1 | 46644 | 47186 |
| YP_009207685.1 | NC_028897_p20 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14258 | 15054 |
| YP_009207725.1 | NC_028897_p60 | resolvase | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39317 | 39781 |
| YP_009207704.1 | NC_028897_p39 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28191 | 30056 |
| YP_009207684.1 | NC_028897_p19 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 13318 | 14148 |
| YP_009207702.1 | NC_028897_p37 | hypothetical protein | phrog_5282 | unknown function | unknown function | -1 | 27419 | 27703 |
| YP_009207701.1 | NC_028897_p36 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26983 | 27429 |
| YP_009207726.1 | NC_028897_p61 | hypothetical protein | phrog_4539 | unknown function | unknown function | -1 | 39771 | 39869 |
| YP_009207688.1 | NC_028897_p23 | tail subunit | phrog_106 | minor tail protein | tail | 1 | 17936 | 18949 |
| YP_009207742.1 | NC_028897_p77 | hypothetical protein | phrog_6322 | unknown function | unknown function | -1 | 45054 | 45206 |
| YP_009207735.1 | NC_028897_p70 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42211 | 43026 |
| YP_009207690.1 | NC_028897_p25 | tail subunit | phrog_352 | minor tail protein | tail | 1 | 20759 | 21223 |
| YP_009207752.1 | NC_028897_p87 | hypothetical protein | phrog_9783 | unknown function | unknown function | -1 | 47641 | 47727 |
| YP_009207739.1 | NC_028897_p74 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 44401 | 44643 |
| YP_009207728.1 | NC_028897_p63 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 39942 | 40094 |
| YP_009207713.1 | NC_028897_p48 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 34527 | 34763 |
| YP_009207669.1 | NC_028897_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2353 | 3402 |
| YP_009207724.1 | NC_028897_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38952 | 39218 |
| YP_009207731.1 | NC_028897_p66 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40659 | 41465 |
| YP_009207675.1 | NC_028897_p10 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 7734 | 9167 |
| YP_009207680.1 | NC_028897_p15 | hypothetical protein | phrog_2348 | unknown function | unknown function | 1 | 11979 | 12122 |
| YP_009207750.1 | NC_028897_p85 | hypothetical protein | phrog_5927 | unknown function | unknown function | -1 | 47208 | 47420 |
| YP_009207707.1 | NC_028897_p42 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 30335 | 30715 |
| YP_009207721.1 | NC_028897_p56 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37701 | 38363 |
| YP_009207710.1 | NC_028897_p45 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 31728 | 32252 |
| YP_009207670.1 | NC_028897_p5 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 3406 | 4047 |
| YP_009207714.1 | NC_028897_p49 | hypothetical protein | phrog_5897 | unknown function | unknown function | -1 | 34750 | 34851 |
| YP_009207740.1 | NC_028897_p75 | hypothetical protein | phrog_5066 | unknown function | unknown function | -1 | 44640 | 44906 |
| YP_009207705.1 | NC_028897_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30064 | 30219 |
| YP_009207751.1 | NC_028897_p86 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 47460 | 47540 |
| YP_009207709.1 | NC_028897_p44 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30968 | 31672 |
| YP_009207748.1 | NC_028897_p83 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 46487 | 46627 |
| YP_009207696.1 | NC_028897_p31 | integrase | phrog_95 | integrase | integration and excision | -1 | 23830 | 25311 |
| YP_009207712.1 | NC_028897_p47 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34357 | 34527 |
| YP_009207743.1 | NC_028897_p78 | hypothetical protein | phrog_5561 | unknown function | unknown function | -1 | 45219 | 45398 |
| YP_009207744.1 | NC_028897_p79 | hypothetical protein | phrog_24757 | unknown function | unknown function | -1 | 45395 | 45568 |
| YP_009207723.1 | NC_028897_p58 | hypothetical protein | phrog_5993 | unknown function | unknown function | -1 | 38585 | 38932 |
| YP_009207673.1 | NC_028897_p8 | lysin B | phrog_102 | endolysin | lysis | 1 | 5150 | 5959 |
| YP_009207738.1 | NC_028897_p73 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 44120 | 44404 |
| YP_009207698.1 | NC_028897_p33 | cytidine deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 26075 | 26587 |
| YP_009207681.1 | NC_028897_p16 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 12119 | 12481 |
| YP_009207683.1 | NC_028897_p18 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 12895 | 13302 |
| YP_009207715.1 | NC_028897_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 34851 | 35516 |
| YP_009207672.1 | NC_028897_p7 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 4941 | 5153 |
| YP_009207676.1 | NC_028897_p11 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9164 | 10003 |
| YP_009207678.1 | NC_028897_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 10598 | 11539 |
| YP_009207689.1 | NC_028897_p24 | tail subunit | phrog_110 | minor tail protein | tail | 1 | 18946 | 20745 |
| YP_009207729.1 | NC_028897_p64 | hypothetical protein | phrog_8372 | unknown function | unknown function | -1 | 40091 | 40264 |
| YP_009207732.1 | NC_028897_p67 | hypothetical protein | phrog_2903 | unknown function | unknown function | -1 | 41452 | 41682 |
| YP_009207686.1 | NC_028897_p21 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14258 | 14638 |
| YP_009207671.1 | NC_028897_p6 | lysin A | phrog_1512 | endolysin | lysis | 1 | 4240 | 4944 |
| YP_009207730.1 | NC_028897_p65 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40261 | 40650 |
| YP_009207722.1 | NC_028897_p57 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38173 | 38583 |
| YP_009207719.1 | NC_028897_p54 | hypothetical protein | phrog_5242 | unknown function | unknown function | -1 | 37151 | 37420 |
| YP_009207720.1 | NC_028897_p55 | hypothetical protein | phrog_5270 | unknown function | unknown function | -1 | 37417 | 37704 |
| YP_009207711.1 | NC_028897_p46 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32278 | 34305 |
| YP_009207741.1 | NC_028897_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44903 | 45052 |
| YP_009207718.1 | NC_028897_p53 | hypothetical protein | phrog_4195 | unknown function | unknown function | -1 | 36753 | 37154 |
| YP_009207745.1 | NC_028897_p80 | hypothetical protein | phrog_5476 | unknown function | unknown function | -1 | 45570 | 45911 |
| YP_009207679.1 | NC_028897_p14 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 11608 | 11982 |
| YP_009207692.1 | NC_028897_p27 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 21515 | 21835 |
| YP_009207747.1 | NC_028897_p82 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 46234 | 46383 |
| YP_009207666.1 | NC_028897_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 501 | 800 |
| YP_009207746.1 | NC_028897_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45908 | 46012 |
| YP_009207733.1 | NC_028897_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41679 | 41930 |
| YP_009207703.1 | NC_028897_p38 | hypothetical protein | phrog_2650 | unknown function | unknown function | -1 | 27700 | 28143 |
| YP_009207737.1 | NC_028897_p72 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43326 | 43856 |
| YP_009207695.1 | NC_028897_p30 | hypothetical protein | phrog_2697 | unknown function | unknown function | -1 | 23600 | 23833 |
| YP_009207736.1 | NC_028897_p71 | hypothetical protein | phrog_5957 | unknown function | unknown function | -1 | 43023 | 43310 |
| YP_009207699.1 | NC_028897_p34 | hypothetical protein | phrog_15643 | unknown function | unknown function | -1 | 26574 | 26717 |