Genomic map of Lactococcus virus Sl4 (NC_028900)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028900
Definition
Lactococcus phage SL4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
REFSEQ
Length
28144
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
34.96
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009208055.1 NC_028900_p21 holin phrog_1379 unknown function unknown function 1 15926 16279
YP_009208081.1 NC_028900_p47 hypothetical protein phrog_1656 unknown function unknown function -1 26137 26325
YP_009208044.1 NC_028900_p10 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6356 6853
YP_009208079.1 NC_028900_p45 hypothetical protein phrog_9199 unknown function unknown function -1 25081 25242
YP_009208042.1 NC_028900_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5782 6045
YP_009208083.1 NC_028900_p49 hypothetical protein phrog_1436 unknown function unknown function 1 26589 26720
YP_009208078.1 NC_028900_p44 DNA polymerase subunit phrog_1284 unknown function unknown function -1 24087 25037
YP_009208075.1 NC_028900_p41 hypothetical protein phrog_1632 unknown function unknown function -1 23110 23397
YP_009208084.1 NC_028900_p50 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 26717 27196
YP_009208038.1 NC_028900_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2637 2921
YP_009208057.1 NC_028900_p23 hypothetical protein phrog_3874 transglycosylase other -1 17057 17554
YP_009208071.1 NC_028900_p37 hypothetical protein phrog_1295 unknown function unknown function -1 21752 21967
YP_009208076.1 NC_028900_p42 hypothetical protein phrog_2228 unknown function unknown function -1 23394 23780
YP_009208050.1 NC_028900_p16 tape measure protein phrog_58 tail length tape measure protein tail 1 9302 12292
YP_009208067.1 NC_028900_p33 hypothetical protein phrog_1825 DNA methyltransferase other -1 20271 20513
YP_009208046.1 NC_028900_p12 hypothetical protein phrog_1440 virion structural protein head and packaging 1 7172 7537
YP_009208065.1 NC_028900_p31 hypothetical protein phrog_1225 unknown function unknown function -1 19787 20095
YP_009208069.1 NC_028900_p35 hypothetical protein phrog_11716 unknown function unknown function -1 20972 21163
YP_009208051.1 NC_028900_p17 hypothetical protein phrog_1424 tail protein tail 1 12292 13698
YP_009208040.1 NC_028900_p6 prohead protease phrog_80 head maturation protease head and packaging 1 4051 4587
YP_009208039.1 NC_028900_p5 portal protein phrog_12 portal protein head and packaging 1 2934 4070
YP_009208043.1 NC_028900_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6045 6359
YP_009208086.1 NC_028900_p52 hypothetical protein phrog_6252 unknown function unknown function 1 27901 28038
YP_009208080.1 NC_028900_p46 hypothetical protein phrog_2413 unknown function unknown function -1 25753 25881
YP_009208072.1 NC_028900_p38 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21983 22342
YP_009208053.1 NC_028900_p19 hypothetical protein phrog_1434 unknown function unknown function 1 14815 15108
YP_009208036.1 NC_028900_p2 hypothetical protein phrog_4501 unknown function unknown function 1 783 1013
YP_009208045.1 NC_028900_p11 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6843 7181
YP_009208085.1 NC_028900_p51 hypothetical protein phrog_1652 unknown function unknown function 1 27197 27364
YP_009208048.1 NC_028900_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 8495 8770
YP_009208074.1 NC_028900_p40 hypothetical protein phrog_1449 unknown function unknown function -1 22887 23153
YP_009208068.1 NC_028900_p34 hypothetical protein phrog_1919 unknown function unknown function -1 20658 20972
YP_009208041.1 NC_028900_p7 minor structural protein phrog_1393 minor head protein head and packaging 1 4580 5761
YP_009208082.1 NC_028900_p48 hypothetical protein phrog_1952 unknown function unknown function 1 26456 26584
YP_009208047.1 NC_028900_p13 major capsid protein phrog_1433 major tail protein tail 1 7551 8456
YP_009208063.1 NC_028900_p29 hypothetical protein phrog_2530 unknown function unknown function -1 19223 19414
YP_009208052.1 NC_028900_p18 hypothetical protein phrog_1432 tail associated lysin tail 1 13698 14825
YP_009208049.1 NC_028900_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 8790 9302
YP_009208070.1 NC_028900_p36 hypothetical protein phrog_1317 unknown function unknown function -1 21243 21755
YP_009208061.1 NC_028900_p27 hypothetical protein phrog_1441 unknown function unknown function -1 18878 19045
YP_009208058.1 NC_028900_p24 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 17608 18072
YP_009208077.1 NC_028900_p43 hypothetical protein phrog_1405 unknown function unknown function -1 23837 24094
YP_009208066.1 NC_028900_p32 hypothetical protein phrog_1508 unknown function unknown function -1 20095 20214
YP_009208037.1 NC_028900_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1025 2647
YP_009208059.1 NC_028900_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18092 18358
YP_009208054.1 NC_028900_p20 receptor binding protein phrog_1630 receptor binding tail protein tail 1 15098 15904
YP_009208064.1 NC_028900_p30 hypothetical protein phrog_1509 unknown function unknown function -1 19456 19713
YP_009208035.1 NC_028900_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 262 786
YP_009208060.1 NC_028900_p26 hypothetical protein phrog_1415 unknown function unknown function -1 18531 18878
YP_009208056.1 NC_028900_p22 endolysin phrog_670 endolysin lysis 1 16276 16980
YP_009208073.1 NC_028900_p39 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 22346 22900
YP_009208062.1 NC_028900_p28 hypothetical protein phrog_1820 unknown function unknown function -1 19045 19221