| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028900 |
Definition |
Lactococcus phage SL4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
28144 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
34.96 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009208055.1 | NC_028900_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 15926 | 16279 |
| YP_009208081.1 | NC_028900_p47 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 26137 | 26325 |
| YP_009208044.1 | NC_028900_p10 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6356 | 6853 |
| YP_009208079.1 | NC_028900_p45 | hypothetical protein | phrog_9199 | unknown function | unknown function | -1 | 25081 | 25242 |
| YP_009208042.1 | NC_028900_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5782 | 6045 |
| YP_009208083.1 | NC_028900_p49 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 26589 | 26720 |
| YP_009208078.1 | NC_028900_p44 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 24087 | 25037 |
| YP_009208075.1 | NC_028900_p41 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 23110 | 23397 |
| YP_009208084.1 | NC_028900_p50 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 26717 | 27196 |
| YP_009208038.1 | NC_028900_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2637 | 2921 |
| YP_009208057.1 | NC_028900_p23 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 17057 | 17554 |
| YP_009208071.1 | NC_028900_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 21752 | 21967 |
| YP_009208076.1 | NC_028900_p42 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 23394 | 23780 |
| YP_009208050.1 | NC_028900_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9302 | 12292 |
| YP_009208067.1 | NC_028900_p33 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 20271 | 20513 |
| YP_009208046.1 | NC_028900_p12 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 7172 | 7537 |
| YP_009208065.1 | NC_028900_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19787 | 20095 |
| YP_009208069.1 | NC_028900_p35 | hypothetical protein | phrog_11716 | unknown function | unknown function | -1 | 20972 | 21163 |
| YP_009208051.1 | NC_028900_p17 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 12292 | 13698 |
| YP_009208040.1 | NC_028900_p6 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 4051 | 4587 |
| YP_009208039.1 | NC_028900_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2934 | 4070 |
| YP_009208043.1 | NC_028900_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6045 | 6359 |
| YP_009208086.1 | NC_028900_p52 | hypothetical protein | phrog_6252 | unknown function | unknown function | 1 | 27901 | 28038 |
| YP_009208080.1 | NC_028900_p46 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 25753 | 25881 |
| YP_009208072.1 | NC_028900_p38 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 21983 | 22342 |
| YP_009208053.1 | NC_028900_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 14815 | 15108 |
| YP_009208036.1 | NC_028900_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 783 | 1013 |
| YP_009208045.1 | NC_028900_p11 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6843 | 7181 |
| YP_009208085.1 | NC_028900_p51 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 27197 | 27364 |
| YP_009208048.1 | NC_028900_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 8495 | 8770 |
| YP_009208074.1 | NC_028900_p40 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 22887 | 23153 |
| YP_009208068.1 | NC_028900_p34 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 20658 | 20972 |
| YP_009208041.1 | NC_028900_p7 | minor structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4580 | 5761 |
| YP_009208082.1 | NC_028900_p48 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 26456 | 26584 |
| YP_009208047.1 | NC_028900_p13 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 7551 | 8456 |
| YP_009208063.1 | NC_028900_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19223 | 19414 |
| YP_009208052.1 | NC_028900_p18 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 13698 | 14825 |
| YP_009208049.1 | NC_028900_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 8790 | 9302 |
| YP_009208070.1 | NC_028900_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 21243 | 21755 |
| YP_009208061.1 | NC_028900_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 18878 | 19045 |
| YP_009208058.1 | NC_028900_p24 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 17608 | 18072 |
| YP_009208077.1 | NC_028900_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 23837 | 24094 |
| YP_009208066.1 | NC_028900_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20095 | 20214 |
| YP_009208037.1 | NC_028900_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1025 | 2647 |
| YP_009208059.1 | NC_028900_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18092 | 18358 |
| YP_009208054.1 | NC_028900_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 15098 | 15904 |
| YP_009208064.1 | NC_028900_p30 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19456 | 19713 |
| YP_009208035.1 | NC_028900_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |
| YP_009208060.1 | NC_028900_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18531 | 18878 |
| YP_009208056.1 | NC_028900_p22 | endolysin | phrog_670 | endolysin | lysis | 1 | 16276 | 16980 |
| YP_009208073.1 | NC_028900_p39 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 22346 | 22900 |
| YP_009208062.1 | NC_028900_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19045 | 19221 |