Genomic map of Lactococcus virus Sl4 (NC_028900)

functional categories (each PHROG annotation is associated to a category)             Notes   
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG

More about this genome

Lactococcus phage SL4, complete genome.
Molecule type
Genome structure
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
Host Name
Lactococcus lactis
Host domain
Is prophage?
Number of proteins
Number of singletons
Number of paralogs

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009208055.1 NC_028900_p21 holin phrog_1379 unknown function unknown function 1 15926 16279
YP_009208081.1 NC_028900_p47 hypothetical protein phrog_1656 unknown function unknown function -1 26137 26325
YP_009208044.1 NC_028900_p10 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6356 6853
YP_009208079.1 NC_028900_p45 hypothetical protein phrog_9199 unknown function unknown function -1 25081 25242
YP_009208042.1 NC_028900_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5782 6045
YP_009208083.1 NC_028900_p49 hypothetical protein phrog_1436 unknown function unknown function 1 26589 26720
YP_009208078.1 NC_028900_p44 DNA polymerase subunit phrog_1284 unknown function unknown function -1 24087 25037
YP_009208075.1 NC_028900_p41 hypothetical protein phrog_1632 unknown function unknown function -1 23110 23397
YP_009208084.1 NC_028900_p50 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 26717 27196
YP_009208038.1 NC_028900_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2637 2921
YP_009208057.1 NC_028900_p23 hypothetical protein phrog_3874 transglycosylase other -1 17057 17554
YP_009208071.1 NC_028900_p37 hypothetical protein phrog_1295 unknown function unknown function -1 21752 21967
YP_009208076.1 NC_028900_p42 hypothetical protein phrog_2228 unknown function unknown function -1 23394 23780
YP_009208050.1 NC_028900_p16 tape measure protein phrog_58 tail length tape measure protein tail 1 9302 12292
YP_009208067.1 NC_028900_p33 hypothetical protein phrog_1825 DNA methyltransferase other -1 20271 20513
YP_009208046.1 NC_028900_p12 hypothetical protein phrog_1440 virion structural protein head and packaging 1 7172 7537
YP_009208065.1 NC_028900_p31 hypothetical protein phrog_1225 unknown function unknown function -1 19787 20095
YP_009208069.1 NC_028900_p35 hypothetical protein phrog_11716 unknown function unknown function -1 20972 21163
YP_009208051.1 NC_028900_p17 hypothetical protein phrog_1424 tail protein tail 1 12292 13698
YP_009208040.1 NC_028900_p6 prohead protease phrog_80 head maturation protease head and packaging 1 4051 4587
YP_009208039.1 NC_028900_p5 portal protein phrog_12 portal protein head and packaging 1 2934 4070
YP_009208043.1 NC_028900_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6045 6359
YP_009208086.1 NC_028900_p52 hypothetical protein phrog_6252 unknown function unknown function 1 27901 28038
YP_009208080.1 NC_028900_p46 hypothetical protein phrog_2413 unknown function unknown function -1 25753 25881
YP_009208072.1 NC_028900_p38 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21983 22342
YP_009208053.1 NC_028900_p19 hypothetical protein phrog_1434 unknown function unknown function 1 14815 15108
YP_009208036.1 NC_028900_p2 hypothetical protein phrog_4501 unknown function unknown function 1 783 1013
YP_009208045.1 NC_028900_p11 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6843 7181
YP_009208085.1 NC_028900_p51 hypothetical protein phrog_1652 unknown function unknown function 1 27197 27364
YP_009208048.1 NC_028900_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 8495 8770
YP_009208074.1 NC_028900_p40 hypothetical protein phrog_1449 unknown function unknown function -1 22887 23153
YP_009208068.1 NC_028900_p34 hypothetical protein phrog_1919 unknown function unknown function -1 20658 20972
YP_009208041.1 NC_028900_p7 minor structural protein phrog_1393 minor head protein head and packaging 1 4580 5761
YP_009208082.1 NC_028900_p48 hypothetical protein phrog_1952 unknown function unknown function 1 26456 26584
YP_009208047.1 NC_028900_p13 major capsid protein phrog_1433 major tail protein tail 1 7551 8456
YP_009208063.1 NC_028900_p29 hypothetical protein phrog_2530 unknown function unknown function -1 19223 19414
YP_009208052.1 NC_028900_p18 hypothetical protein phrog_1432 tail associated lysin tail 1 13698 14825
YP_009208049.1 NC_028900_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 8790 9302
YP_009208070.1 NC_028900_p36 hypothetical protein phrog_1317 unknown function unknown function -1 21243 21755
YP_009208061.1 NC_028900_p27 hypothetical protein phrog_1441 unknown function unknown function -1 18878 19045
YP_009208058.1 NC_028900_p24 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 17608 18072
YP_009208077.1 NC_028900_p43 hypothetical protein phrog_1405 unknown function unknown function -1 23837 24094
YP_009208066.1 NC_028900_p32 hypothetical protein phrog_1508 unknown function unknown function -1 20095 20214
YP_009208037.1 NC_028900_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1025 2647
YP_009208059.1 NC_028900_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18092 18358
YP_009208054.1 NC_028900_p20 receptor binding protein phrog_1630 receptor binding tail protein tail 1 15098 15904
YP_009208064.1 NC_028900_p30 hypothetical protein phrog_1509 unknown function unknown function -1 19456 19713
YP_009208035.1 NC_028900_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 262 786
YP_009208060.1 NC_028900_p26 hypothetical protein phrog_1415 unknown function unknown function -1 18531 18878
YP_009208056.1 NC_028900_p22 endolysin phrog_670 endolysin lysis 1 16276 16980
YP_009208073.1 NC_028900_p39 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 22346 22900
YP_009208062.1 NC_028900_p28 hypothetical protein phrog_1820 unknown function unknown function -1 19045 19221