| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028904 |
Definition |
Streptomyces phage Amela, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Camvirus. |
DB of origin |
REFSEQ |
Length |
49452 |
Host Name |
Streptomyces venezuelae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
65.61 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009208290.1 | NC_028904_p12 | head-tail adaptor | phrog_320 | head closure Hc1 | connector | 1 | 9021 | 9356 |
| YP_009208326.1 | NC_028904_p48 | hypothetical protein | phrog_15237 | unknown function | unknown function | 1 | 36312 | 36461 |
| YP_009208280.1 | NC_028904_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 787 | 1275 |
| YP_009208318.1 | NC_028904_p40 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 30514 | 31179 |
| YP_009208320.1 | NC_028904_p42 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 31517 | 31726 |
| YP_009208284.1 | NC_028904_p6 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2575 | 4221 |
| YP_009208315.1 | NC_028904_p37 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29758 | 30123 |
| YP_009208296.1 | NC_028904_p18 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 11854 | 15966 |
| YP_009208287.1 | NC_028904_p9 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6795 | 7334 |
| YP_009208321.1 | NC_028904_p43 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 31710 | 32897 |
| YP_009208329.1 | NC_028904_p51 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 37563 | 38975 |
| YP_009208301.1 | NC_028904_p23 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 20559 | 21089 |
| YP_009208323.1 | NC_028904_p45 | hypothetical protein | phrog_3512 | sigma factor | transcription regulation | 1 | 33275 | 33643 |
| YP_009208340.1 | NC_028904_p62 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 42974 | 43234 |
| YP_009208279.1 | NC_028904_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 91 | 369 |
| YP_009208300.1 | NC_028904_p22 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 18357 | 20531 |
| YP_009208306.1 | NC_028904_p28 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 24358 | 24642 |
| YP_009208351.1 | NC_028904_p73 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 47180 | 47992 |
| YP_009208283.1 | NC_028904_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2131 | 2559 |
| YP_009208333.1 | NC_028904_p55 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 40527 | 40778 |
| YP_009208324.1 | NC_028904_p46 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 33640 | 34035 |
| YP_009208295.1 | NC_028904_p17 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 11141 | 11464 |
| YP_009208316.1 | NC_028904_p38 | hypothetical protein | phrog_23527 | unknown function | unknown function | 1 | 30120 | 30242 |
| YP_009208338.1 | NC_028904_p60 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 41925 | 42314 |
| YP_009208330.1 | NC_028904_p52 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 39168 | 39806 |
| YP_009208314.1 | NC_028904_p36 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 28790 | 29680 |
| YP_009208294.1 | NC_028904_p16 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 11141 | 11850 |
| YP_009208325.1 | NC_028904_p47 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 34136 | 36250 |
| YP_009208349.1 | NC_028904_p71 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 46573 | 46935 |
| YP_009208319.1 | NC_028904_p41 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 31176 | 31517 |
| YP_009208298.1 | NC_028904_p20 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 16831 | 18048 |
| YP_009208299.1 | NC_028904_p21 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 18052 | 18357 |
| YP_009208345.1 | NC_028904_p67 | hypothetical protein | phrog_4867 | unknown function | unknown function | -1 | 44745 | 45149 |
| YP_009208342.1 | NC_028904_p64 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 43849 | 44073 |
| YP_009208352.1 | NC_028904_p74 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 48017 | 48160 |
| YP_009208346.1 | NC_028904_p68 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 45211 | 45690 |
| YP_009208304.1 | NC_028904_p26 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 22973 | 23320 |
| YP_009208317.1 | NC_028904_p39 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 30243 | 30680 |
| YP_009208350.1 | NC_028904_p72 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 46938 | 47090 |
| YP_009208281.1 | NC_028904_p3 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1492 | 1746 |
| YP_009208288.1 | NC_028904_p10 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7412 | 8494 |
| YP_009208336.1 | NC_028904_p58 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 41175 | 41420 |
| YP_009208307.1 | NC_028904_p29 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 24711 | 25001 |
| YP_009208331.1 | NC_028904_p53 | hypothetical protein | phrog_15428 | unknown function | unknown function | -1 | 39896 | 40390 |
| YP_009208309.1 | NC_028904_p31 | hypothetical protein | phrog_20792 | unknown function | unknown function | 1 | 25848 | 26276 |
| YP_009208328.1 | NC_028904_p50 | hypothetical protein | phrog_17008 | unknown function | unknown function | 1 | 36858 | 37358 |
| YP_009208339.1 | NC_028904_p61 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 42381 | 42977 |
| YP_009208285.1 | NC_028904_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 4252 | 5685 |
| YP_009208322.1 | NC_028904_p44 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 32894 | 33247 |
| YP_009208313.1 | NC_028904_p35 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 28386 | 28790 |
| YP_009208302.1 | NC_028904_p24 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 21138 | 21644 |
| YP_009208282.1 | NC_028904_p4 | nuclease-like protein | phrog_452 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1747 | 2115 |
| YP_009208334.1 | NC_028904_p56 | hypothetical protein | phrog_5971 | unknown function | unknown function | -1 | 40775 | 40933 |
| YP_009208289.1 | NC_028904_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8566 | 9024 |
| YP_009208291.1 | NC_028904_p13 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9353 | 9742 |
| YP_009208308.1 | NC_028904_p30 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 25135 | 25590 |
| YP_009208343.1 | NC_028904_p65 | hypothetical protein | phrog_4785 | unknown function | unknown function | -1 | 44145 | 44414 |
| YP_009208348.1 | NC_028904_p70 | hypothetical protein | phrog_6619 | unknown function | unknown function | -1 | 46243 | 46491 |
| YP_009208312.1 | NC_028904_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 27877 | 28311 |
| YP_009208335.1 | NC_028904_p57 | hypothetical protein | phrog_26679 | unknown function | unknown function | -1 | 40954 | 41178 |
| YP_009208292.1 | NC_028904_p14 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9742 | 10245 |
| YP_009208344.1 | NC_028904_p66 | hypothetical protein | phrog_18679 | unknown function | unknown function | -1 | 44518 | 44727 |
| YP_009208347.1 | NC_028904_p69 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 45775 | 46182 |
| YP_009208337.1 | NC_028904_p59 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 41434 | 41865 |
| YP_009208293.1 | NC_028904_p15 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 10262 | 11005 |
| YP_009208310.1 | NC_028904_p32 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 26230 | 27183 |
| YP_009208341.1 | NC_028904_p63 | HNH domain protein | phrog_4842 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 43234 | 43728 |
| YP_009208311.1 | NC_028904_p33 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 27315 | 27800 |
| YP_009208297.1 | NC_028904_p19 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 15969 | 16826 |
| YP_009208327.1 | NC_028904_p49 | Lsr2-like protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 36527 | 36853 |
| YP_009208332.1 | NC_028904_p54 | hypothetical protein | phrog_29306 | unknown function | unknown function | -1 | 40432 | 40530 |
| YP_009208353.1 | NC_028904_p75 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 48259 | 48630 |
| YP_009208286.1 | NC_028904_p8 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5682 | 6791 |
| YP_009208305.1 | NC_028904_p27 | endolysin | phrog_1493 | endolysin | lysis | 1 | 23390 | 24361 |
| YP_009208303.1 | NC_028904_p25 | hypothetical protein | phrog_988 | tail protein | tail | 1 | 21720 | 22976 |