Genomic map of Clostridium phage phiCD111 (NC_028905)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028905
Definition
Clostridium phage phiCD111, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41560
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
30.89
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009208380.1 NC_028905_p27 hypothetical protein phrog_6809 unknown function unknown function 1 26433 26939
YP_009208377.1 NC_028905_p24 Endolysine phrog_435 endolysin lysis 1 24278 25084
YP_009208403.1 NC_028905_p50 hypothetical protein phrog_1310 unknown function unknown function 1 38636 38998
YP_009208360.1 NC_028905_p7 Scaffolding protein phrog_194 head scaffolding protein head and packaging 1 5440 6012
YP_009208383.1 NC_028905_p30 hypothetical protein phrog_4741 unknown function unknown function -1 28087 28419
YP_009208404.1 NC_028905_p51 hypothetical protein phrog_7197 unknown function unknown function 1 38985 39155
YP_009208369.1 NC_028905_p16 hypothetical protein phrog_7974 unknown function unknown function 1 10552 11193
YP_009208367.1 NC_028905_p14 hypothetical protein phrog_4450 unknown function unknown function 1 9511 9873
YP_009208381.1 NC_028905_p28 hypothetical protein phrog_4337 unknown function unknown function 1 26959 27429
YP_009208362.1 NC_028905_p9 hypothetical protein phrog_541 head-tail adaptor connector 1 7100 7432
YP_009208391.1 NC_028905_p38 DNA-binding helix-turn-helix protein phrog_8 transcriptional regulator transcription regulation -1 34319 34705
YP_009208363.1 NC_028905_p10 hypothetical protein phrog_3366 unknown function unknown function 1 7434 7868
YP_009208397.1 NC_028905_p44 hypothetical protein phrog_5442 unknown function unknown function 1 36990 37301
YP_009208368.1 NC_028905_p15 hypothetical protein phrog_706 unknown function unknown function 1 9873 10478
YP_009208406.1 NC_028905_p53 Integrase phrog_216 integrase integration and excision 1 39918 40526
YP_009208408.1 NC_028905_p55 Recombinase/resolvase phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 40991 41560
YP_009208374.1 NC_028905_p21 Tail fiber protein phrog_9525 tail fiber protein tail 1 19810 22044
YP_009208399.1 NC_028905_p46 hypothetical protein phrog_3221 unknown function unknown function 1 37527 37700
YP_009208364.1 NC_028905_p11 hypothetical protein phrog_556 minor head protein head and packaging 1 7875 8222
YP_009208373.1 NC_028905_p20 hypothetical protein phrog_6130 unknown function unknown function 1 19553 19795
YP_009208388.1 NC_028905_p35 hypothetical protein phrog_738 unknown function unknown function -1 30541 30693
YP_009208359.1 NC_028905_p6 hypothetical protein phrog_419 unknown function unknown function 1 5027 5308
YP_009208366.1 NC_028905_p13 hypothetical protein phrog_3099 unknown function unknown function 1 8653 9453
YP_009208392.1 NC_028905_p39 hypothetical protein phrog_27690 unknown function unknown function 1 34793 35041
YP_009208398.1 NC_028905_p45 hypothetical protein phrog_2569 unknown function unknown function 1 37347 37496
YP_009208400.1 NC_028905_p47 hypothetical protein phrog_6827 unknown function unknown function 1 37700 37819
YP_009208389.1 NC_028905_p36 DNAse/helicase protein phrog_5173 unknown function unknown function 1 31212 33377
YP_009208375.1 NC_028905_p22 Tail fiber protein phrog_7809 tail fiber protein tail 1 22044 23927
YP_009208357.1 NC_028905_p4 Minor capsid protein phrog_581 minor head protein head and packaging 1 3459 4682
YP_009208376.1 NC_028905_p23 holin phrog_4884 holin lysis 1 24014 24277
YP_009208395.1 NC_028905_p42 hypothetical protein phrog_1029 unknown function unknown function 1 36058 36771
YP_009208407.1 NC_028905_p54 hypothetical protein phrog_27502 unknown function unknown function 1 40720 40842
YP_009208356.1 NC_028905_p3 Minor capsid protein phrog_533 portal protein head and packaging 1 2046 3458
YP_009208384.1 NC_028905_p31 para phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 28420 29229
YP_009208385.1 NC_028905_p32 hypothetical protein phrog_2329 unknown function unknown function -1 29540 29722
YP_009208371.1 NC_028905_p18 Tail component protein phrog_33 distal tail protein Dit tail 1 16656 17399
YP_009208390.1 NC_028905_p37 hypothetical protein phrog_6335 unknown function unknown function 1 33424 33771
YP_009208402.1 NC_028905_p49 hypothetical protein phrog_12058 unknown function unknown function 1 38235 38624
YP_009208382.1 NC_028905_p29 hypothetical protein phrog_4021 unknown function unknown function -1 27662 27943
YP_009208393.1 NC_028905_p40 hypothetical protein phrog_4206 unknown function unknown function 1 35127 35552
YP_009208401.1 NC_028905_p48 Single-stranded DNA-binding protein 2 phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 37812 38216
YP_009208365.1 NC_028905_p12 hypothetical protein phrog_3266 tail completion connector 1 8219 8650
YP_009208372.1 NC_028905_p19 Tail protein/endopeptidase phrog_8687 tail protein with peptidase activity other 1 17729 19528
YP_009208405.1 NC_028905_p52 Sigma70/sigmaF-like protein phrog_36 transcriptional regulator transcription regulation 1 39167 39739
YP_009208379.1 NC_028905_p26 hypothetical protein phrog_6775 unknown function unknown function 1 25524 26354
YP_009208358.1 NC_028905_p5 hypothetical protein phrog_1233 unknown function unknown function 1 4684 5010
YP_009208396.1 NC_028905_p43 hypothetical protein phrog_2065 unknown function unknown function 1 36829 36993
YP_009208355.1 NC_028905_p2 Terminase large subunit phrog_2 terminase large subunit head and packaging 1 723 2045
YP_009208354.1 NC_028905_p1 Terminase small subunit phrog_509 terminase small subunit head and packaging 1 29 736
YP_009208386.1 NC_028905_p33 hypothetical protein phrog_11497 membrane protein moron, auxiliary metabolic gene and host takeover -1 29726 29887
YP_009208394.1 NC_028905_p41 Replication terminator protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 35631 36035
YP_009208370.1 NC_028905_p17 Tail tape measure phrog_1272 tail length tape measure protein tail 1 11298 16601
YP_009208378.1 NC_028905_p25 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 25133 25345
YP_009208387.1 NC_028905_p34 hypothetical protein singleton unknown function unknown function 1 29998 30141
YP_009208361.1 NC_028905_p8 Phage coat protein phrog_247 major head protein head and packaging 1 6023 7096