| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028905 |
Definition |
Clostridium phage phiCD111, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41560 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
30.89 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009208380.1 | NC_028905_p27 | hypothetical protein | phrog_6809 | unknown function | unknown function | 1 | 26433 | 26939 |
| YP_009208377.1 | NC_028905_p24 | Endolysine | phrog_435 | endolysin | lysis | 1 | 24278 | 25084 |
| YP_009208403.1 | NC_028905_p50 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 38636 | 38998 |
| YP_009208360.1 | NC_028905_p7 | Scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5440 | 6012 |
| YP_009208383.1 | NC_028905_p30 | hypothetical protein | phrog_4741 | unknown function | unknown function | -1 | 28087 | 28419 |
| YP_009208404.1 | NC_028905_p51 | hypothetical protein | phrog_7197 | unknown function | unknown function | 1 | 38985 | 39155 |
| YP_009208369.1 | NC_028905_p16 | hypothetical protein | phrog_7974 | unknown function | unknown function | 1 | 10552 | 11193 |
| YP_009208367.1 | NC_028905_p14 | hypothetical protein | phrog_4450 | unknown function | unknown function | 1 | 9511 | 9873 |
| YP_009208381.1 | NC_028905_p28 | hypothetical protein | phrog_4337 | unknown function | unknown function | 1 | 26959 | 27429 |
| YP_009208362.1 | NC_028905_p9 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 7100 | 7432 |
| YP_009208391.1 | NC_028905_p38 | DNA-binding helix-turn-helix protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 34319 | 34705 |
| YP_009208363.1 | NC_028905_p10 | hypothetical protein | phrog_3366 | unknown function | unknown function | 1 | 7434 | 7868 |
| YP_009208397.1 | NC_028905_p44 | hypothetical protein | phrog_5442 | unknown function | unknown function | 1 | 36990 | 37301 |
| YP_009208368.1 | NC_028905_p15 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 9873 | 10478 |
| YP_009208406.1 | NC_028905_p53 | Integrase | phrog_216 | integrase | integration and excision | 1 | 39918 | 40526 |
| YP_009208408.1 | NC_028905_p55 | Recombinase/resolvase | phrog_125 | DNA invertase | DNA, RNA and nucleotide metabolism | 1 | 40991 | 41560 |
| YP_009208374.1 | NC_028905_p21 | Tail fiber protein | phrog_9525 | tail fiber protein | tail | 1 | 19810 | 22044 |
| YP_009208399.1 | NC_028905_p46 | hypothetical protein | phrog_3221 | unknown function | unknown function | 1 | 37527 | 37700 |
| YP_009208364.1 | NC_028905_p11 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 7875 | 8222 |
| YP_009208373.1 | NC_028905_p20 | hypothetical protein | phrog_6130 | unknown function | unknown function | 1 | 19553 | 19795 |
| YP_009208388.1 | NC_028905_p35 | hypothetical protein | phrog_738 | unknown function | unknown function | -1 | 30541 | 30693 |
| YP_009208359.1 | NC_028905_p6 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 5027 | 5308 |
| YP_009208366.1 | NC_028905_p13 | hypothetical protein | phrog_3099 | unknown function | unknown function | 1 | 8653 | 9453 |
| YP_009208392.1 | NC_028905_p39 | hypothetical protein | phrog_27690 | unknown function | unknown function | 1 | 34793 | 35041 |
| YP_009208398.1 | NC_028905_p45 | hypothetical protein | phrog_2569 | unknown function | unknown function | 1 | 37347 | 37496 |
| YP_009208400.1 | NC_028905_p47 | hypothetical protein | phrog_6827 | unknown function | unknown function | 1 | 37700 | 37819 |
| YP_009208389.1 | NC_028905_p36 | DNAse/helicase protein | phrog_5173 | unknown function | unknown function | 1 | 31212 | 33377 |
| YP_009208375.1 | NC_028905_p22 | Tail fiber protein | phrog_7809 | tail fiber protein | tail | 1 | 22044 | 23927 |
| YP_009208357.1 | NC_028905_p4 | Minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 3459 | 4682 |
| YP_009208376.1 | NC_028905_p23 | holin | phrog_4884 | holin | lysis | 1 | 24014 | 24277 |
| YP_009208395.1 | NC_028905_p42 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 36058 | 36771 |
| YP_009208407.1 | NC_028905_p54 | hypothetical protein | phrog_27502 | unknown function | unknown function | 1 | 40720 | 40842 |
| YP_009208356.1 | NC_028905_p3 | Minor capsid protein | phrog_533 | portal protein | head and packaging | 1 | 2046 | 3458 |
| YP_009208384.1 | NC_028905_p31 | para | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 28420 | 29229 |
| YP_009208385.1 | NC_028905_p32 | hypothetical protein | phrog_2329 | unknown function | unknown function | -1 | 29540 | 29722 |
| YP_009208371.1 | NC_028905_p18 | Tail component protein | phrog_33 | distal tail protein Dit | tail | 1 | 16656 | 17399 |
| YP_009208390.1 | NC_028905_p37 | hypothetical protein | phrog_6335 | unknown function | unknown function | 1 | 33424 | 33771 |
| YP_009208402.1 | NC_028905_p49 | hypothetical protein | phrog_12058 | unknown function | unknown function | 1 | 38235 | 38624 |
| YP_009208382.1 | NC_028905_p29 | hypothetical protein | phrog_4021 | unknown function | unknown function | -1 | 27662 | 27943 |
| YP_009208393.1 | NC_028905_p40 | hypothetical protein | phrog_4206 | unknown function | unknown function | 1 | 35127 | 35552 |
| YP_009208401.1 | NC_028905_p48 | Single-stranded DNA-binding protein 2 | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37812 | 38216 |
| YP_009208365.1 | NC_028905_p12 | hypothetical protein | phrog_3266 | tail completion | connector | 1 | 8219 | 8650 |
| YP_009208372.1 | NC_028905_p19 | Tail protein/endopeptidase | phrog_8687 | tail protein with peptidase activity | other | 1 | 17729 | 19528 |
| YP_009208405.1 | NC_028905_p52 | Sigma70/sigmaF-like protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 39167 | 39739 |
| YP_009208379.1 | NC_028905_p26 | hypothetical protein | phrog_6775 | unknown function | unknown function | 1 | 25524 | 26354 |
| YP_009208358.1 | NC_028905_p5 | hypothetical protein | phrog_1233 | unknown function | unknown function | 1 | 4684 | 5010 |
| YP_009208396.1 | NC_028905_p43 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 36829 | 36993 |
| YP_009208355.1 | NC_028905_p2 | Terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 723 | 2045 |
| YP_009208354.1 | NC_028905_p1 | Terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 29 | 736 |
| YP_009208386.1 | NC_028905_p33 | hypothetical protein | phrog_11497 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 29726 | 29887 |
| YP_009208394.1 | NC_028905_p41 | Replication terminator protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 35631 | 36035 |
| YP_009208370.1 | NC_028905_p17 | Tail tape measure | phrog_1272 | tail length tape measure protein | tail | 1 | 11298 | 16601 |
| YP_009208378.1 | NC_028905_p25 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 25133 | 25345 |
| YP_009208387.1 | NC_028905_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29998 | 30141 |
| YP_009208361.1 | NC_028905_p8 | Phage coat protein | phrog_247 | major head protein | head and packaging | 1 | 6023 | 7096 |