| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028906 |
Definition |
Mycobacterium phage Toto, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus. |
DB of origin |
REFSEQ |
Length |
75933 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
140 |
%GC |
63.01 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009208500.1 | NC_028906_p92 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57371 | 57529 |
| YP_009208427.1 | NC_028906_p19 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 11379 | 12350 |
| YP_009208414.1 | NC_028906_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| YP_009208468.1 | NC_028906_p60 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43168 | 43473 |
| YP_009208530.1 | NC_028906_p122 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 69138 | 69269 |
| YP_009208415.1 | NC_028906_p7 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 1511 | 1855 |
| YP_009208517.1 | NC_028906_p109 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 64738 | 65331 |
| YP_009208447.1 | NC_028906_p39 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34252 | 34638 |
| YP_009208442.1 | NC_028906_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31523 | 31861 |
| YP_009208456.1 | NC_028906_p48 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36984 | 37130 |
| YP_009208429.1 | NC_028906_p21 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 13063 | 13341 |
| YP_009208443.1 | NC_028906_p35 | LysB | phrog_102 | endolysin | lysis | 1 | 31858 | 32715 |
| YP_009208487.1 | NC_028906_p79 | DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50536 | 51744 |
| YP_009208436.1 | NC_028906_p28 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27524 | 28468 |
| YP_009208426.1 | NC_028906_p18 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10948 | 11352 |
| YP_009208483.1 | NC_028906_p75 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48970 | 49287 |
| YP_009208455.1 | NC_028906_p47 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36750 | 36965 |
| YP_009208423.1 | NC_028906_p15 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9679 | 10245 |
| YP_009208461.1 | NC_028906_p53 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39602 | 40351 |
| YP_009208412.1 | NC_028906_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| YP_009208523.1 | NC_028906_p115 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67623 | 67835 |
| YP_009208473.1 | NC_028906_p65 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44548 | 45516 |
| YP_009208508.1 | NC_028906_p100 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 61530 | 61727 |
| YP_009208482.1 | NC_028906_p74 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48560 | 48973 |
| YP_009208459.1 | NC_028906_p51 | integrase (Tyr) | phrog_1 | integrase | integration and excision | 1 | 38365 | 39246 |
| YP_009208451.1 | NC_028906_p43 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 35825 | 36121 |
| YP_009208466.1 | NC_028906_p58 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42203 | 42349 |
| YP_009208544.1 | NC_028906_p136 | hypothetical protein | phrog_7581 | unknown function | unknown function | -1 | 74080 | 74292 |
| YP_009208490.1 | NC_028906_p82 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52161 | 52382 |
| YP_009208460.1 | NC_028906_p52 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39385 | 39624 |
| YP_009208510.1 | NC_028906_p102 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62081 | 62329 |
| YP_009208417.1 | NC_028906_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2303 | 4966 |
| YP_009208516.1 | NC_028906_p108 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 64431 | 64748 |
| YP_009208428.1 | NC_028906_p20 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12470 | 12931 |
| YP_009208528.1 | NC_028906_p120 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68825 | 68962 |
| YP_009208524.1 | NC_028906_p116 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67816 | 68070 |
| YP_009208534.1 | NC_028906_p126 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70562 | 70816 |
| YP_009208422.1 | NC_028906_p14 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 9488 | 9679 |
| YP_009208465.1 | NC_028906_p57 | hypothetical protein | phrog_923 | unknown function | unknown function | 1 | 41356 | 42201 |
| YP_009208536.1 | NC_028906_p128 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 71249 | 71707 |
| YP_009208503.1 | NC_028906_p95 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58106 | 58441 |
| YP_009208526.1 | NC_028906_p118 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68477 | 68644 |
| YP_009208497.1 | NC_028906_p89 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54914 | 56239 |
| YP_009208430.1 | NC_028906_p22 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 13334 | 18067 |
| YP_009208444.1 | NC_028906_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32712 | 33128 |
| YP_009208471.1 | NC_028906_p63 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43840 | 44001 |
| YP_009208486.1 | NC_028906_p78 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50157 | 50489 |
| YP_009208478.1 | NC_028906_p70 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47412 | 47780 |
| YP_009208440.1 | NC_028906_p32 | LysA | phrog_317 | endolysin | lysis | 1 | 29710 | 31143 |
| YP_009208531.1 | NC_028906_p123 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 69253 | 69414 |
| YP_009208413.1 | NC_028906_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 813 | 1064 |
| YP_009208434.1 | NC_028906_p26 | minor tail | phrog_346 | minor tail protein | tail | 1 | 22284 | 24680 |
| YP_009208410.1 | NC_028906_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_009208499.1 | NC_028906_p91 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57094 | 57354 |
| YP_009208485.1 | NC_028906_p77 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49510 | 50160 |
| YP_009208489.1 | NC_028906_p81 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51911 | 52186 |
| YP_009208446.1 | NC_028906_p38 | HNH endonuclease domain | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33542 | 34063 |
| YP_009208454.1 | NC_028906_p46 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36521 | 36691 |
| YP_009208418.1 | NC_028906_p10 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4978 | 5199 |
| YP_009208525.1 | NC_028906_p117 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 68019 | 68480 |
| YP_009208532.1 | NC_028906_p124 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69794 | 70057 |
| YP_009208425.1 | NC_028906_p17 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10590 | 10970 |
| YP_009208494.1 | NC_028906_p86 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 53406 | 54347 |
| YP_009208476.1 | NC_028906_p68 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46631 | 46942 |
| YP_009208493.1 | NC_028906_p85 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53057 | 53251 |
| YP_009208529.1 | NC_028906_p121 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68959 | 69138 |
| YP_009208453.1 | NC_028906_p45 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36357 | 36524 |
| YP_009208518.1 | NC_028906_p110 | DnaQ-like | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 65342 | 66127 |
| YP_009208477.1 | NC_028906_p69 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46942 | 47412 |
| YP_009208488.1 | NC_028906_p80 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51741 | 51929 |
| YP_009208512.1 | NC_028906_p104 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62698 | 62988 |
| YP_009208539.1 | NC_028906_p131 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72491 | 72727 |
| YP_009208501.1 | NC_028906_p93 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57526 | 57978 |
| YP_009208433.1 | NC_028906_p25 | minor tail | phrog_732 | minor tail protein | tail | 1 | 21446 | 22267 |
| YP_009208513.1 | NC_028906_p105 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 63562 | 63786 |
| YP_009208449.1 | NC_028906_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34880 | 35347 |
| YP_009208479.1 | NC_028906_p71 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47777 | 48154 |
| YP_009208546.1 | NC_028906_p138 | hypothetical protein | phrog_8479 | unknown function | unknown function | -1 | 74490 | 74690 |
| YP_009208491.1 | NC_028906_p83 | hypothetical protein | phrog_9963 | unknown function | unknown function | 1 | 52375 | 52701 |
| YP_009208511.1 | NC_028906_p103 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 62334 | 62645 |
| YP_009208547.1 | NC_028906_p139 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74719 | 75066 |
| YP_009208475.1 | NC_028906_p67 | Erf | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45916 | 46638 |
| YP_009208502.1 | NC_028906_p94 | hypothetical protein | phrog_7833 | unknown function | unknown function | 1 | 57982 | 58104 |
| YP_009208470.1 | NC_028906_p62 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43607 | 43840 |
| YP_009208507.1 | NC_028906_p99 | ClpP protease | phrog_94 | head maturation protease | head and packaging | 1 | 60749 | 61528 |
| YP_009208439.1 | NC_028906_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29283 | 29567 |
| YP_009208509.1 | NC_028906_p101 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61724 | 62080 |
| YP_009208535.1 | NC_028906_p127 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70884 | 71252 |
| YP_009208474.1 | NC_028906_p66 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45513 | 45923 |
| YP_009208457.1 | NC_028906_p49 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37130 | 37525 |
| YP_009208505.1 | NC_028906_p97 | methyltransferase | phrog_67 | DNA methyltransferase | other | 1 | 58977 | 60200 |
| YP_009208538.1 | NC_028906_p130 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 72053 | 72370 |
| YP_009208520.1 | NC_028906_p112 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 66374 | 67336 |
| YP_009208448.1 | NC_028906_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34686 | 34877 |
| YP_009208543.1 | NC_028906_p135 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73841 | 74077 |
| YP_009208437.1 | NC_028906_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28549 | 28977 |
| YP_009208542.1 | NC_028906_p134 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73671 | 73844 |
| YP_009208515.1 | NC_028906_p107 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64057 | 64431 |
| YP_009208537.1 | NC_028906_p129 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71722 | 72051 |
| YP_009208411.1 | NC_028906_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| YP_009208496.1 | NC_028906_p88 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54795 | 54917 |
| YP_009208495.1 | NC_028906_p87 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 54454 | 54822 |
| YP_009208480.1 | NC_028906_p72 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48154 | 48327 |
| YP_009208519.1 | NC_028906_p111 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 66124 | 66366 |
| YP_009208492.1 | NC_028906_p84 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52677 | 53060 |
| YP_009208541.1 | NC_028906_p133 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73283 | 73666 |
| YP_009208419.1 | NC_028906_p11 | portal | phrog_12 | portal protein | head and packaging | 1 | 5183 | 6742 |
| YP_009208462.1 | NC_028906_p54 | hypothetical protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40470 | 40901 |
| YP_009208527.1 | NC_028906_p119 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68628 | 68828 |
| YP_009208441.1 | NC_028906_p33 | holin | phrog_526 | holin | lysis | 1 | 31147 | 31530 |
| YP_009208435.1 | NC_028906_p27 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24677 | 27523 |
| YP_009208424.1 | NC_028906_p16 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 10258 | 10593 |
| YP_009208469.1 | NC_028906_p61 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43492 | 43599 |
| YP_009208498.1 | NC_028906_p90 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 56276 | 57097 |
| YP_009208458.1 | NC_028906_p50 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37812 | 38114 |
| YP_009208521.1 | NC_028906_p113 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 67333 | 67470 |
| YP_009208431.1 | NC_028906_p23 | minor tail | phrog_106 | minor tail protein | tail | 1 | 18097 | 19758 |
| YP_009208445.1 | NC_028906_p37 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33135 | 33380 |
| YP_009208481.1 | NC_028906_p73 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48330 | 48563 |
| YP_009208409.1 | NC_028906_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
| YP_009208522.1 | NC_028906_p114 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67457 | 67630 |
| YP_009208416.1 | NC_028906_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1956 | 2267 |
| YP_009208484.1 | NC_028906_p76 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49277 | 49513 |
| YP_009208467.1 | NC_028906_p59 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42346 | 42624 |
| YP_009208450.1 | NC_028906_p42 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35344 | 35820 |
| YP_009208533.1 | NC_028906_p125 | ParBc domain | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 70054 | 70443 |
| YP_009208472.1 | NC_028906_p64 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44222 | 44551 |
| YP_009208463.1 | NC_028906_p55 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41127 | 41225 |
| YP_009208452.1 | NC_028906_p44 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 36229 | 36357 |
| YP_009208438.1 | NC_028906_p30 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28974 | 29150 |
| YP_009208420.1 | NC_028906_p12 | hypothetical protein | phrog_2753 | head maturation protease | head and packaging | 1 | 6745 | 7839 |
| YP_009208464.1 | NC_028906_p56 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41222 | 41359 |
| YP_009208540.1 | NC_028906_p132 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72743 | 73279 |
| YP_009208432.1 | NC_028906_p24 | minor tail | phrog_110 | minor tail protein | tail | 1 | 19830 | 21425 |
| YP_009208548.1 | NC_028906_p140 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75141 | 75362 |
| YP_009208504.1 | NC_028906_p96 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58438 | 58980 |
| YP_009208506.1 | NC_028906_p98 | ssDNA binding | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60193 | 60633 |
| YP_009208545.1 | NC_028906_p137 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74289 | 74486 |
| YP_009208514.1 | NC_028906_p106 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63783 | 64046 |
| YP_009208421.1 | NC_028906_p13 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 7927 | 9420 |