| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028910 |
Definition |
Mycobacterium phage XFactor, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
55617 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
61.71 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009208824.1 | NC_028910_p83 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 49935 | 50054 |
| YP_009208811.1 | NC_028910_p70 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45621 | 46583 |
| YP_009208781.1 | NC_028910_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31747 | 31893 |
| YP_009208799.1 | NC_028910_p58 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39256 | 39621 |
| YP_009208764.1 | NC_028910_p23 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 23636 | 24274 |
| YP_009208823.1 | NC_028910_p82 | hypothetical protein | phrog_7643 | unknown function | unknown function | 1 | 49600 | 49938 |
| YP_009208751.1 | NC_028910_p10 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| YP_009208749.1 | NC_028910_p8 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| YP_009208774.1 | NC_028910_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28942 | 29316 |
| YP_009208795.1 | NC_028910_p54 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 37834 | 38022 |
| YP_009208808.1 | NC_028910_p67 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | 1 | 44212 | 44940 |
| YP_009208757.1 | NC_028910_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14812 | 16521 |
| YP_009208805.1 | NC_028910_p64 | hypothetical protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 41191 | 43710 |
| YP_009208773.1 | NC_028910_p32 | hypothetical protein | phrog_443 | holin | lysis | 1 | 28712 | 28945 |
| YP_009208830.1 | NC_028910_p89 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 51585 | 51998 |
| YP_009208803.1 | NC_028910_p62 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40257 | 40835 |
| YP_009208744.1 | NC_028910_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_009208771.1 | NC_028910_p30 | hypothetical protein | phrog_700 | endolysin | lysis | 1 | 26489 | 27697 |
| YP_009208797.1 | NC_028910_p56 | hypothetical protein | phrog_1333 | unknown function | unknown function | 1 | 38361 | 38762 |
| YP_009208758.1 | NC_028910_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16576 | 17406 |
| YP_009208834.1 | NC_028910_p93 | serine/threonine kinase | phrog_3297 | kinase | other | 1 | 53847 | 54320 |
| YP_009208791.1 | NC_028910_p50 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 36012 | 36242 |
| YP_009208784.1 | NC_028910_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34084 | 34296 |
| YP_009208785.1 | NC_028910_p44 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 34177 | 34845 |
| YP_009208833.1 | NC_028910_p92 | hypothetical protein | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 52408 | 53844 |
| YP_009208763.1 | NC_028910_p22 | minor tail protein | phrog_2005 | minor tail protein | tail | 1 | 23368 | 23622 |
| YP_009208807.1 | NC_028910_p66 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 43924 | 44073 |
| YP_009208789.1 | NC_028910_p48 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35606 | 35869 |
| YP_009208819.1 | NC_028910_p78 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48679 | 49011 |
| YP_009208818.1 | NC_028910_p77 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48229 | 48513 |
| YP_009208816.1 | NC_028910_p75 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 47775 | 47960 |
| YP_009208769.1 | NC_028910_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26030 | 26182 |
| YP_009208827.1 | NC_028910_p86 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 51008 | 51175 |
| YP_009208770.1 | NC_028910_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26256 | 26492 |
| YP_009208777.1 | NC_028910_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30466 | 30687 |
| YP_009208761.1 | NC_028910_p20 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 21826 | 22986 |
| YP_009208813.1 | NC_028910_p72 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 46840 | 47232 |
| YP_009208788.1 | NC_028910_p47 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 35487 | 35609 |
| YP_009208831.1 | NC_028910_p90 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 51995 | 52237 |
| YP_009208775.1 | NC_028910_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29341 | 29574 |
| YP_009208779.1 | NC_028910_p38 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 30822 | 31358 |
| YP_009208748.1 | NC_028910_p7 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| YP_009208835.1 | NC_028910_p94 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 54317 | 54529 |
| YP_009208825.1 | NC_028910_p84 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 50051 | 50677 |
| YP_009208814.1 | NC_028910_p73 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47232 | 47426 |
| YP_009208822.1 | NC_028910_p81 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 49448 | 49603 |
| YP_009208793.1 | NC_028910_p52 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 36735 | 37475 |
| YP_009208747.1 | NC_028910_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| YP_009208821.1 | NC_028910_p80 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 49287 | 49466 |
| YP_009208778.1 | NC_028910_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30680 | 30772 |
| YP_009208798.1 | NC_028910_p57 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38759 | 39259 |
| YP_009208804.1 | NC_028910_p63 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40832 | 41194 |
| YP_009208832.1 | NC_028910_p91 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 52230 | 52391 |
| YP_009208836.1 | NC_028910_p95 | hypothetical protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54526 | 55149 |
| YP_009208767.1 | NC_028910_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25596 | 25880 |
| YP_009208792.1 | NC_028910_p51 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36239 | 36700 |
| YP_009208746.1 | NC_028910_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4393 | 5043 |
| YP_009208800.1 | NC_028910_p59 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 39621 | 39776 |
| YP_009208809.1 | NC_028910_p68 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44921 | 45067 |
| YP_009208745.1 | NC_028910_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_009208810.1 | NC_028910_p69 | hypothetical protein | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45067 | 45621 |
| YP_009208794.1 | NC_028910_p53 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37556 | 37837 |
| YP_009208801.1 | NC_028910_p60 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 39773 | 40003 |
| YP_009208780.1 | NC_028910_p39 | hypothetical protein | phrog_6842 | unknown function | unknown function | -1 | 31403 | 31705 |
| YP_009208815.1 | NC_028910_p74 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 47423 | 47782 |
| YP_009208783.1 | NC_028910_p42 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33459 | 33911 |
| YP_009208828.1 | NC_028910_p87 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 51182 | 51391 |
| YP_009208772.1 | NC_028910_p31 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 27697 | 28698 |
| YP_009208776.1 | NC_028910_p35 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29561 | 30382 |
| YP_009208768.1 | NC_028910_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25887 | 26033 |
| YP_009208826.1 | NC_028910_p85 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 50787 | 51011 |
| YP_009208756.1 | NC_028910_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13017 | 14726 |
| YP_009208787.1 | NC_028910_p46 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35203 | 35490 |
| YP_009208812.1 | NC_028910_p71 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46580 | 46843 |
| YP_009208759.1 | NC_028910_p18 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 17403 | 19940 |
| YP_009208752.1 | NC_028910_p11 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7631 | 8440 |
| YP_009208760.1 | NC_028910_p19 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19937 | 21823 |
| YP_009208782.1 | NC_028910_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 32278 | 33396 |
| YP_009208829.1 | NC_028910_p88 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 51391 | 51588 |
| YP_009208820.1 | NC_028910_p79 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 49027 | 49290 |
| YP_009208765.1 | NC_028910_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24271 | 25251 |
| YP_009208802.1 | NC_028910_p61 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40000 | 40260 |
| YP_009208786.1 | NC_028910_p45 | CRO protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34913 | 35146 |
| YP_009208753.1 | NC_028910_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8577 | 9513 |
| YP_009208754.1 | NC_028910_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8577 | 9128 |
| YP_009208796.1 | NC_028910_p55 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38026 | 38361 |
| YP_009208755.1 | NC_028910_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9531 | 13016 |
| YP_009208743.1 | NC_028910_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_009208806.1 | NC_028910_p65 | hypothetical protein | phrog_10510 | unknown function | unknown function | 1 | 43727 | 43927 |
| YP_009208766.1 | NC_028910_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25255 | 25386 |
| YP_009208762.1 | NC_028910_p21 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 23004 | 23345 |
| YP_009208817.1 | NC_028910_p76 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 47957 | 48232 |
| YP_009208790.1 | NC_028910_p49 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 35866 | 36015 |
| YP_009208742.1 | NC_028910_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009208750.1 | NC_028910_p9 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7110 |