Genomic map of Mycobacterium phage XFactor (NC_028910)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028910
Definition
Mycobacterium phage XFactor, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
55617
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
95
%GC
61.71
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009208824.1 NC_028910_p83 hypothetical protein phrog_4126 unknown function unknown function 1 49935 50054
YP_009208811.1 NC_028910_p70 hypothetical protein phrog_3171 replication initiation protein DNA, RNA and nucleotide metabolism 1 45621 46583
YP_009208781.1 NC_028910_p40 hypothetical protein singleton unknown function unknown function -1 31747 31893
YP_009208799.1 NC_028910_p58 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39256 39621
YP_009208764.1 NC_028910_p23 minor tail protein phrog_2012 minor tail protein tail 1 23636 24274
YP_009208823.1 NC_028910_p82 hypothetical protein phrog_7643 unknown function unknown function 1 49600 49938
YP_009208751.1 NC_028910_p10 head-to-tail connector phrog_813 head-tail adaptor connector 1 7097 7504
YP_009208749.1 NC_028910_p8 head-to-tail connector phrog_763 head-tail adaptor connector 1 6446 6778
YP_009208774.1 NC_028910_p33 hypothetical protein phrog_404 minor tail protein tail 1 28942 29316
YP_009208795.1 NC_028910_p54 hypothetical protein phrog_7605 unknown function unknown function 1 37834 38022
YP_009208808.1 NC_028910_p67 hypothetical protein phrog_1008 DNA methyltransferase other 1 44212 44940
YP_009208757.1 NC_028910_p16 minor tail protein phrog_110 minor tail protein tail 1 14812 16521
YP_009208805.1 NC_028910_p64 hypothetical protein phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 41191 43710
YP_009208773.1 NC_028910_p32 hypothetical protein phrog_443 holin lysis 1 28712 28945
YP_009208830.1 NC_028910_p89 hypothetical protein phrog_1186 unknown function unknown function 1 51585 51998
YP_009208803.1 NC_028910_p62 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 40257 40835
YP_009208744.1 NC_028910_p3 portal protein phrog_104 portal protein head and packaging 1 2255 3625
YP_009208771.1 NC_028910_p30 hypothetical protein phrog_700 endolysin lysis 1 26489 27697
YP_009208797.1 NC_028910_p56 hypothetical protein phrog_1333 unknown function unknown function 1 38361 38762
YP_009208758.1 NC_028910_p17 minor tail protein phrog_732 minor tail protein tail 1 16576 17406
YP_009208834.1 NC_028910_p93 serine/threonine kinase phrog_3297 kinase other 1 53847 54320
YP_009208791.1 NC_028910_p50 hypothetical protein phrog_780 unknown function unknown function 1 36012 36242
YP_009208784.1 NC_028910_p43 hypothetical protein singleton unknown function unknown function 1 34084 34296
YP_009208785.1 NC_028910_p44 immunity repressor phrog_2838 transcriptional repressor transcription regulation -1 34177 34845
YP_009208833.1 NC_028910_p92 hypothetical protein phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 52408 53844
YP_009208763.1 NC_028910_p22 minor tail protein phrog_2005 minor tail protein tail 1 23368 23622
YP_009208807.1 NC_028910_p66 hypothetical protein phrog_2704 unknown function unknown function 1 43924 44073
YP_009208789.1 NC_028910_p48 hypothetical protein phrog_1840 excisionase integration and excision 1 35606 35869
YP_009208819.1 NC_028910_p78 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 48679 49011
YP_009208818.1 NC_028910_p77 hypothetical protein phrog_647 unknown function unknown function 1 48229 48513
YP_009208816.1 NC_028910_p75 hypothetical protein phrog_2591 unknown function unknown function 1 47775 47960
YP_009208769.1 NC_028910_p28 hypothetical protein phrog_1172 unknown function unknown function 1 26030 26182
YP_009208827.1 NC_028910_p86 hypothetical protein phrog_1869 unknown function unknown function 1 51008 51175
YP_009208770.1 NC_028910_p29 hypothetical protein phrog_747 unknown function unknown function 1 26256 26492
YP_009208777.1 NC_028910_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30466 30687
YP_009208761.1 NC_028910_p20 minor tail protein phrog_2106 minor tail protein tail 1 21826 22986
YP_009208813.1 NC_028910_p72 hypothetical protein phrog_6275 unknown function unknown function 1 46840 47232
YP_009208788.1 NC_028910_p47 hypothetical protein phrog_5563 unknown function unknown function 1 35487 35609
YP_009208831.1 NC_028910_p90 hypothetical protein phrog_1385 unknown function unknown function 1 51995 52237
YP_009208775.1 NC_028910_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29341 29574
YP_009208779.1 NC_028910_p38 hypothetical protein phrog_357 transcriptional repressor transcription regulation -1 30822 31358
YP_009208748.1 NC_028910_p7 head-to-tail connector phrog_2377 head-tail adaptor Ad1 connector 1 5883 6449
YP_009208835.1 NC_028910_p94 hypothetical protein phrog_1693 unknown function unknown function 1 54317 54529
YP_009208825.1 NC_028910_p84 hypothetical protein phrog_1467 unknown function unknown function 1 50051 50677
YP_009208814.1 NC_028910_p73 hypothetical protein phrog_1943 unknown function unknown function 1 47232 47426
YP_009208822.1 NC_028910_p81 hypothetical protein phrog_1545 unknown function unknown function 1 49448 49603
YP_009208793.1 NC_028910_p52 hypothetical protein phrog_3416 unknown function unknown function 1 36735 37475
YP_009208747.1 NC_028910_p6 major capsid protein phrog_267 major head protein head and packaging 1 5062 5883
YP_009208821.1 NC_028910_p80 hypothetical protein phrog_1091 unknown function unknown function 1 49287 49466
YP_009208778.1 NC_028910_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30680 30772
YP_009208798.1 NC_028910_p57 hypothetical protein phrog_2096 unknown function unknown function 1 38759 39259
YP_009208804.1 NC_028910_p63 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40832 41194
YP_009208832.1 NC_028910_p91 hypothetical protein phrog_2057 unknown function unknown function 1 52230 52391
YP_009208836.1 NC_028910_p95 hypothetical protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 54526 55149
YP_009208767.1 NC_028910_p26 hypothetical protein phrog_411 unknown function unknown function 1 25596 25880
YP_009208792.1 NC_028910_p51 hypothetical protein phrog_1797 unknown function unknown function 1 36239 36700
YP_009208746.1 NC_028910_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4393 5043
YP_009208800.1 NC_028910_p59 hypothetical protein phrog_2078 unknown function unknown function 1 39621 39776
YP_009208809.1 NC_028910_p68 hypothetical protein phrog_1311 unknown function unknown function 1 44921 45067
YP_009208745.1 NC_028910_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3612 4367
YP_009208810.1 NC_028910_p69 hypothetical protein phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 45067 45621
YP_009208794.1 NC_028910_p53 hypothetical protein phrog_1849 unknown function unknown function 1 37556 37837
YP_009208801.1 NC_028910_p60 hypothetical protein phrog_1834 unknown function unknown function 1 39773 40003
YP_009208780.1 NC_028910_p39 hypothetical protein phrog_6842 unknown function unknown function -1 31403 31705
YP_009208815.1 NC_028910_p74 hypothetical protein phrog_1546 unknown function unknown function 1 47423 47782
YP_009208783.1 NC_028910_p42 hypothetical protein phrog_1948 unknown function unknown function -1 33459 33911
YP_009208828.1 NC_028910_p87 hypothetical protein phrog_6481 unknown function unknown function 1 51182 51391
YP_009208772.1 NC_028910_p31 hypothetical protein phrog_102 endolysin lysis 1 27697 28698
YP_009208776.1 NC_028910_p35 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29561 30382
YP_009208768.1 NC_028910_p27 hypothetical protein phrog_932 unknown function unknown function 1 25887 26033
YP_009208826.1 NC_028910_p85 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 50787 51011
YP_009208756.1 NC_028910_p15 minor tail protein phrog_106 minor tail protein tail 1 13017 14726
YP_009208787.1 NC_028910_p46 hypothetical protein phrog_2025 unknown function unknown function 1 35203 35490
YP_009208812.1 NC_028910_p71 hypothetical protein phrog_2080 unknown function unknown function 1 46580 46843
YP_009208759.1 NC_028910_p18 hypothetical protein phrog_346 minor tail protein tail 1 17403 19940
YP_009208752.1 NC_028910_p11 major tail protein phrog_476 major tail protein tail 1 7631 8440
YP_009208760.1 NC_028910_p19 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 19937 21823
YP_009208782.1 NC_028910_p41 integrase phrog_1 integrase integration and excision 1 32278 33396
YP_009208829.1 NC_028910_p88 hypothetical protein phrog_1694 unknown function unknown function 1 51391 51588
YP_009208820.1 NC_028910_p79 hypothetical protein phrog_1901 unknown function unknown function 1 49027 49290
YP_009208765.1 NC_028910_p24 hypothetical protein phrog_754 minor tail protein tail 1 24271 25251
YP_009208802.1 NC_028910_p61 hypothetical protein phrog_2632 unknown function unknown function 1 40000 40260
YP_009208786.1 NC_028910_p45 CRO protein phrog_3 transcriptional repressor transcription regulation 1 34913 35146
YP_009208753.1 NC_028910_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8577 9513
YP_009208754.1 NC_028910_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8577 9128
YP_009208796.1 NC_028910_p55 hypothetical protein phrog_658 unknown function unknown function 1 38026 38361
YP_009208755.1 NC_028910_p14 tape measure protein phrog_1942 tail length tape measure protein tail 1 9531 13016
YP_009208743.1 NC_028910_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 587 2224
YP_009208806.1 NC_028910_p65 hypothetical protein phrog_10510 unknown function unknown function 1 43727 43927
YP_009208766.1 NC_028910_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25255 25386
YP_009208762.1 NC_028910_p21 minor tail protein phrog_240 head protein head and packaging 1 23004 23345
YP_009208817.1 NC_028910_p76 hypothetical protein phrog_722 unknown function unknown function 1 47957 48232
YP_009208790.1 NC_028910_p49 hypothetical protein phrog_1816 unknown function unknown function 1 35866 36015
YP_009208742.1 NC_028910_p1 hypothetical protein phrog_226 minor tail protein tail 1 109 564
YP_009208750.1 NC_028910_p9 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6781 7110