Genomic map of Staphylococcus virus phiNM2 (NC_028913)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028913
Definition
Staphylococcus aureus phage phiNM2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43145
Host Name
Staphylococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
34.58
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009209020.1 NC_028913_p47 hypothetical protein phrog_132 head-tail adaptor connector 1 23164 23496
YP_009209007.1 NC_028913_p34 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 15295 15483
YP_009208988.1 NC_028913_p15 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7482 8033
YP_009208991.1 NC_028913_p18 hypothetical protein phrog_2232 unknown function unknown function -1 8823 9680
YP_009209018.1 NC_028913_p45 head protein phrog_10 major head protein head and packaging 1 21872 22846
YP_009209003.1 NC_028913_p30 hypothetical protein phrog_98 unknown function unknown function 1 13758 14207
YP_009209039.1 NC_028913_p66 amidase phrog_635 endolysin lysis 1 41027 42472
YP_009208976.1 NC_028913_p3 hypothetical protein phrog_2039 unknown function unknown function -1 1676 2608
YP_009209001.1 NC_028913_p28 hypothetical protein phrog_467 unknown function unknown function 1 13169 13570
YP_009208980.1 NC_028913_p7 hypothetical protein phrog_845 unknown function unknown function 1 4544 4738
YP_009208995.1 NC_028913_p22 hypothetical protein phrog_433 unknown function unknown function 1 11469 11690
YP_009209016.1 NC_028913_p43 hypothetical protein phrog_1431 unknown function unknown function 1 20939 21109
YP_009208993.1 NC_028913_p20 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10525 11304
YP_009209013.1 NC_028913_p40 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 17041 18318
YP_009208981.1 NC_028913_p8 hypothetical protein phrog_2222 unknown function unknown function -1 4942 5172
YP_009209010.1 NC_028913_p37 hypothetical protein phrog_1367 unknown function unknown function 1 15835 15981
YP_009209002.1 NC_028913_p29 hypothetical protein phrog_2532 unknown function unknown function 1 13567 13761
YP_009209014.1 NC_028913_p41 phage portal protein phrog_64 portal protein head and packaging 1 18329 19864
YP_009209000.1 NC_028913_p27 hypothetical protein phrog_258 virulence associated other 1 12906 13154
YP_009209012.1 NC_028913_p39 phage terminase small subunit phrog_51 terminase small subunit head and packaging 1 16614 17054
YP_009209032.1 NC_028913_p59 hypothetical protein phrog_300 tail fiber protein tail 1 36038 36415
YP_009209028.1 NC_028913_p55 hypothetical protein phrog_33 distal tail protein Dit tail 1 29433 30380
YP_009208975.1 NC_028913_p2 excisionase phrog_2033 excisionase integration and excision 1 1517 1696
YP_009208985.1 NC_028913_p12 hypothetical protein phrog_401 unknown function unknown function 1 5925 6185
YP_009208977.1 NC_028913_p4 cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 2644 3363
YP_009208997.1 NC_028913_p24 hypothetical protein phrog_299 unknown function unknown function 1 12107 12292
YP_009208984.1 NC_028913_p11 hypothetical protein phrog_2182 unknown function unknown function 1 5603 5920
YP_009209015.1 NC_028913_p42 phage head morphogenesis protein phrog_115 minor head protein head and packaging 1 19871 20866
YP_009209008.1 NC_028913_p35 hypothetical protein phrog_3885 unknown function unknown function 1 15458 15658
YP_009209030.1 NC_028913_p57 hypothetical protein phrog_287 minor tail protein tail 1 32305 34215
YP_009208994.1 NC_028913_p21 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 11298 11456
YP_009209029.1 NC_028913_p56 hypothetical protein phrog_663 minor head protein head and packaging 1 30389 32290
YP_009209011.1 NC_028913_p38 phage transcriptional activator RinA phrog_36 transcriptional regulator transcription regulation 1 16005 16427
YP_009208982.1 NC_028913_p9 hypothetical protein phrog_3785 unknown function unknown function 1 5231 5359
YP_009209026.1 NC_028913_p53 hypothetical protein phrog_441 tail assembly chaperone tail 1 25595 25939
YP_009208974.1 NC_028913_p1 site-specific recombinase phrog_95 integrase integration and excision -1 23 1408
YP_009208979.1 NC_028913_p6 phage anti-repressor phrog_130 anti-repressor Ant transcription regulation 1 3739 4527
YP_009208983.1 NC_028913_p10 hypothetical protein phrog_369 unknown function unknown function 1 5352 5513
YP_009209021.1 NC_028913_p48 hypothetical protein phrog_348 minor head protein head and packaging 1 23493 23795
YP_009209025.1 NC_028913_p52 hypothetical protein phrog_183 tail chaperone protein tail 1 25200 25565
YP_009209035.1 NC_028913_p62 cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other 1 37069 38967
YP_009209023.1 NC_028913_p50 hypothetical protein phrog_176 tail terminator connector 1 24154 24537
YP_009208992.1 NC_028913_p19 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9745 10515
YP_009209005.1 NC_028913_p32 hypothetical protein phrog_266 unknown function unknown function 1 14481 14729
YP_009209031.1 NC_028913_p58 hypothetical protein phrog_257 minor tail protein tail 1 34215 36038
YP_009209017.1 NC_028913_p44 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 21244 21858
YP_009208987.1 NC_028913_p14 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6679 7452
YP_009209024.1 NC_028913_p51 major tail protein phrog_238 major tail protein tail 1 24556 25137
YP_009209037.1 NC_028913_p64 hypothetical protein phrog_1262 unknown function unknown function 1 40158 40553
YP_009209038.1 NC_028913_p65 holin phrog_962 holin lysis 1 40609 41046
YP_009209004.1 NC_028913_p31 hypothetical protein phrog_1034 unknown function unknown function 1 14204 14488
YP_009209036.1 NC_028913_p63 tail fiber phrog_1125 tail fiber protein tail 1 38980 40152
YP_009208998.1 NC_028913_p25 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12293 12652
YP_009208986.1 NC_028913_p13 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6200 6679
YP_009209009.1 NC_028913_p36 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 15658 15834
YP_009209033.1 NC_028913_p60 hypothetical protein phrog_134 unknown function unknown function 1 36416 36592
YP_009209006.1 NC_028913_p33 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14722 15258
YP_009208999.1 NC_028913_p26 hypothetical protein phrog_236 nucleotide kinase other 1 12652 12906
YP_009208978.1 NC_028913_p5 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 3505 3723
YP_009209022.1 NC_028913_p49 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23795 24142
YP_009208989.1 NC_028913_p16 hypothetical protein phrog_398 unknown function unknown function 1 8046 8717
YP_009209034.1 NC_028913_p61 hypothetical protein phrog_276 unknown function unknown function 1 36633 36932
YP_009209019.1 NC_028913_p46 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 22868 23155
YP_009208996.1 NC_028913_p23 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11700 12107
YP_009209027.1 NC_028913_p54 phage tape measure protein phrog_58 tail length tape measure protein tail 1 25956 29420
YP_009208990.1 NC_028913_p17 hypothetical protein phrog_10049 unknown function unknown function 1 8714 8830