| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028913 |
Definition |
Staphylococcus aureus phage phiNM2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43145 |
Host Name |
Staphylococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
34.58 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009209020.1 | NC_028913_p47 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 23164 | 23496 |
| YP_009209007.1 | NC_028913_p34 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15295 | 15483 |
| YP_009208988.1 | NC_028913_p15 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7482 | 8033 |
| YP_009208991.1 | NC_028913_p18 | hypothetical protein | phrog_2232 | unknown function | unknown function | -1 | 8823 | 9680 |
| YP_009209018.1 | NC_028913_p45 | head protein | phrog_10 | major head protein | head and packaging | 1 | 21872 | 22846 |
| YP_009209003.1 | NC_028913_p30 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13758 | 14207 |
| YP_009209039.1 | NC_028913_p66 | amidase | phrog_635 | endolysin | lysis | 1 | 41027 | 42472 |
| YP_009208976.1 | NC_028913_p3 | hypothetical protein | phrog_2039 | unknown function | unknown function | -1 | 1676 | 2608 |
| YP_009209001.1 | NC_028913_p28 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 13169 | 13570 |
| YP_009208980.1 | NC_028913_p7 | hypothetical protein | phrog_845 | unknown function | unknown function | 1 | 4544 | 4738 |
| YP_009208995.1 | NC_028913_p22 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11469 | 11690 |
| YP_009209016.1 | NC_028913_p43 | hypothetical protein | phrog_1431 | unknown function | unknown function | 1 | 20939 | 21109 |
| YP_009208993.1 | NC_028913_p20 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10525 | 11304 |
| YP_009209013.1 | NC_028913_p40 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 17041 | 18318 |
| YP_009208981.1 | NC_028913_p8 | hypothetical protein | phrog_2222 | unknown function | unknown function | -1 | 4942 | 5172 |
| YP_009209010.1 | NC_028913_p37 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 15835 | 15981 |
| YP_009209002.1 | NC_028913_p29 | hypothetical protein | phrog_2532 | unknown function | unknown function | 1 | 13567 | 13761 |
| YP_009209014.1 | NC_028913_p41 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 18329 | 19864 |
| YP_009209000.1 | NC_028913_p27 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12906 | 13154 |
| YP_009209012.1 | NC_028913_p39 | phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 16614 | 17054 |
| YP_009209032.1 | NC_028913_p59 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 36038 | 36415 |
| YP_009209028.1 | NC_028913_p55 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 29433 | 30380 |
| YP_009208975.1 | NC_028913_p2 | excisionase | phrog_2033 | excisionase | integration and excision | 1 | 1517 | 1696 |
| YP_009208985.1 | NC_028913_p12 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 5925 | 6185 |
| YP_009208977.1 | NC_028913_p4 | cI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2644 | 3363 |
| YP_009208997.1 | NC_028913_p24 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12107 | 12292 |
| YP_009208984.1 | NC_028913_p11 | hypothetical protein | phrog_2182 | unknown function | unknown function | 1 | 5603 | 5920 |
| YP_009209015.1 | NC_028913_p42 | phage head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 19871 | 20866 |
| YP_009209008.1 | NC_028913_p35 | hypothetical protein | phrog_3885 | unknown function | unknown function | 1 | 15458 | 15658 |
| YP_009209030.1 | NC_028913_p57 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 32305 | 34215 |
| YP_009208994.1 | NC_028913_p21 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 11298 | 11456 |
| YP_009209029.1 | NC_028913_p56 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 30389 | 32290 |
| YP_009209011.1 | NC_028913_p38 | phage transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 16005 | 16427 |
| YP_009208982.1 | NC_028913_p9 | hypothetical protein | phrog_3785 | unknown function | unknown function | 1 | 5231 | 5359 |
| YP_009209026.1 | NC_028913_p53 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 25595 | 25939 |
| YP_009208974.1 | NC_028913_p1 | site-specific recombinase | phrog_95 | integrase | integration and excision | -1 | 23 | 1408 |
| YP_009208979.1 | NC_028913_p6 | phage anti-repressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 3739 | 4527 |
| YP_009208983.1 | NC_028913_p10 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 5352 | 5513 |
| YP_009209021.1 | NC_028913_p48 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 23493 | 23795 |
| YP_009209025.1 | NC_028913_p52 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 25200 | 25565 |
| YP_009209035.1 | NC_028913_p62 | cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 37069 | 38967 |
| YP_009209023.1 | NC_028913_p50 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 24154 | 24537 |
| YP_009208992.1 | NC_028913_p19 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9745 | 10515 |
| YP_009209005.1 | NC_028913_p32 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14481 | 14729 |
| YP_009209031.1 | NC_028913_p58 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 34215 | 36038 |
| YP_009209017.1 | NC_028913_p44 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 21244 | 21858 |
| YP_009208987.1 | NC_028913_p14 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6679 | 7452 |
| YP_009209024.1 | NC_028913_p51 | major tail protein | phrog_238 | major tail protein | tail | 1 | 24556 | 25137 |
| YP_009209037.1 | NC_028913_p64 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 40158 | 40553 |
| YP_009209038.1 | NC_028913_p65 | holin | phrog_962 | holin | lysis | 1 | 40609 | 41046 |
| YP_009209004.1 | NC_028913_p31 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 14204 | 14488 |
| YP_009209036.1 | NC_028913_p63 | tail fiber | phrog_1125 | tail fiber protein | tail | 1 | 38980 | 40152 |
| YP_009208998.1 | NC_028913_p25 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12293 | 12652 |
| YP_009208986.1 | NC_028913_p13 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6200 | 6679 |
| YP_009209009.1 | NC_028913_p36 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 15658 | 15834 |
| YP_009209033.1 | NC_028913_p60 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36416 | 36592 |
| YP_009209006.1 | NC_028913_p33 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14722 | 15258 |
| YP_009208999.1 | NC_028913_p26 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 12652 | 12906 |
| YP_009208978.1 | NC_028913_p5 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3505 | 3723 |
| YP_009209022.1 | NC_028913_p49 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23795 | 24142 |
| YP_009208989.1 | NC_028913_p16 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8046 | 8717 |
| YP_009209034.1 | NC_028913_p61 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36633 | 36932 |
| YP_009209019.1 | NC_028913_p46 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 22868 | 23155 |
| YP_009208996.1 | NC_028913_p23 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11700 | 12107 |
| YP_009209027.1 | NC_028913_p54 | phage tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 25956 | 29420 |
| YP_009208990.1 | NC_028913_p17 | hypothetical protein | phrog_10049 | unknown function | unknown function | 1 | 8714 | 8830 |