Genomic map of Mycobacterium phage Sheen (NC_028914)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028914
Definition
Mycobacterium phage Sheen, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52927
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
63.38
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009209089.1 NC_028914_p50 hypothetical protein singleton unknown function unknown function -1 37713 37874
YP_009209122.1 NC_028914_p83 hypothetical protein phrog_3842 unknown function unknown function -1 51196 51786
YP_009209097.1 NC_028914_p58 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41725 42174
YP_009209116.1 NC_028914_p77 hypothetical protein phrog_865 HNH endonuclease DNA, RNA and nucleotide metabolism -1 49772 49954
YP_009209049.1 NC_028914_p10 lysin B phrog_102 endolysin lysis 1 7592 8332
YP_009209118.1 NC_028914_p79 hypothetical protein phrog_586 unknown function unknown function -1 50107 50508
YP_009209043.1 NC_028914_p4 tail protein phrog_819 tail protein tail 1 1566 2318
YP_009209078.1 NC_028914_p39 hypothetical protein phrog_383 unknown function unknown function -1 30590 30979
YP_009209068.1 NC_028914_p29 minor tail protein phrog_404 minor tail protein tail 1 25298 25588
YP_009209060.1 NC_028914_p21 head-tail connector phrog_123 tail terminator connector 1 15660 16109
YP_009209090.1 NC_028914_p51 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 37871 38761
YP_009209102.1 NC_028914_p63 hypothetical protein phrog_397 unknown function unknown function -1 43661 43903
YP_009209084.1 NC_028914_p45 HTH DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 33846 34109
YP_009209094.1 NC_028914_p55 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 40195 40842
YP_009209080.1 NC_028914_p41 hypothetical protein singleton unknown function unknown function -1 31169 31429
YP_009209098.1 NC_028914_p59 hypothetical protein singleton unknown function unknown function -1 42171 42251
YP_009209071.1 NC_028914_p32 integrase phrog_95 integrase integration and excision -1 27417 28925
YP_009209041.1 NC_028914_p2 hypothetical protein phrog_226 minor tail protein tail 1 732 1166
YP_009209117.1 NC_028914_p78 hypothetical protein phrog_855 unknown function unknown function -1 49956 50105
YP_009209077.1 NC_028914_p38 hypothetical protein phrog_6992 unknown function unknown function -1 30414 30590
YP_009209061.1 NC_028914_p22 major tail protein phrog_117 major tail protein tail 1 16124 16708
YP_009209121.1 NC_028914_p82 hypothetical protein phrog_2246 unknown function unknown function -1 50904 51110
YP_009209106.1 NC_028914_p67 hypothetical protein phrog_520 unknown function unknown function -1 45495 45854
YP_009209082.1 NC_028914_p43 hypothetical protein phrog_2094 unknown function unknown function -1 33302 33643
YP_009209092.1 NC_028914_p53 hypothetical protein phrog_1167 phosphofructokinase other -1 39528 40022
YP_009209046.1 NC_028914_p7 glycine-rich tail protein phrog_754 minor tail protein tail 1 4509 5477
YP_009209085.1 NC_028914_p46 hypothetical protein phrog_690 unknown function unknown function -1 34093 34305
YP_009209120.1 NC_028914_p81 hypothetical protein phrog_828 unknown function unknown function -1 50715 50900
YP_009209095.1 NC_028914_p56 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 40658 41062
YP_009209073.1 NC_028914_p34 deoxycytidylate deaminase phrog_2369 dCMP deaminase DNA, RNA and nucleotide metabolism -1 29311 29802
YP_009209042.1 NC_028914_p3 hypothetical protein phrog_1126 unknown function unknown function 1 1259 1576
YP_009209114.1 NC_028914_p75 hypothetical protein phrog_5664 unknown function unknown function -1 48753 49112
YP_009209062.1 NC_028914_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16821 17614
YP_009209048.1 NC_028914_p9 holin phrog_526 holin lysis 1 7152 7595
YP_009209108.1 NC_028914_p69 hypothetical protein singleton unknown function unknown function -1 46043 46240
YP_009209107.1 NC_028914_p68 hypothetical protein phrog_666 unknown function unknown function -1 45851 46024
YP_009209083.1 NC_028914_p44 hypothetical protein phrog_18021 unknown function unknown function -1 33652 33849
YP_009209074.1 NC_028914_p35 hypothetical protein phrog_38286 unknown function unknown function -1 29799 29936
YP_009209109.1 NC_028914_p70 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 46276 47073
YP_009209064.1 NC_028914_p25 tape measure protein phrog_305 tail length tape measure protein tail 1 17618 20998
YP_009209040.1 NC_028914_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 397 693
YP_009209063.1 NC_028914_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16821 17186
YP_009209050.1 NC_028914_p11 terminase large subunit phrog_9 terminase large subunit head and packaging 1 8359 10059
YP_009209053.1 NC_028914_p14 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12621 13130
YP_009209058.1 NC_028914_p19 head-tail connector phrog_320 head closure Hc1 connector 1 14917 15300
YP_009209115.1 NC_028914_p76 SprT-like protein phrog_1006 unknown function unknown function -1 49302 49775
YP_009209056.1 NC_028914_p17 head-tail connector phrog_137 head-tail adaptor Ad1 connector 1 14394 14768
YP_009209123.1 NC_028914_p84 hypothetical protein phrog_1438 unknown function unknown function -1 51824 51991
YP_009209069.1 NC_028914_p30 minor tail protein phrog_2683 minor tail protein tail 1 25593 27047
YP_009209101.1 NC_028914_p62 hypothetical protein phrog_27222 unknown function unknown function -1 43518 43664
YP_009209052.1 NC_028914_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11549 12562
YP_009209066.1 NC_028914_p27 minor tail protein phrog_110 minor tail protein tail 1 22979 24781
YP_009209072.1 NC_028914_p33 hypothetical protein phrog_2697 unknown function unknown function -1 29071 29301
YP_009209065.1 NC_028914_p26 minor tail protein phrog_106 minor tail protein tail 1 21003 22982
YP_009209076.1 NC_028914_p37 hypothetical protein phrog_2046 unknown function unknown function -1 30229 30417
YP_009209110.1 NC_028914_p71 hypothetical protein phrog_1439 unknown function unknown function -1 47070 47483
YP_009209111.1 NC_028914_p72 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 47566 48075
YP_009209087.1 NC_028914_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35081 35605
YP_009209100.1 NC_028914_p61 hypothetical protein phrog_289 GTP-binding domain other -1 43072 43521
YP_009209047.1 NC_028914_p8 lysin A phrog_317 endolysin lysis 1 5731 7155
YP_009209086.1 NC_028914_p47 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 34317 35012
YP_009209119.1 NC_028914_p80 hypothetical protein phrog_15203 unknown function unknown function -1 50588 50698
YP_009209044.1 NC_028914_p5 tail protein phrog_382 minor tail protein with lysin activity tail 1 2347 3570
YP_009209054.1 NC_028914_p15 capsid protein phrog_10 major head protein head and packaging 1 13160 14149
YP_009209113.1 NC_028914_p74 hypothetical protein phrog_519 unknown function unknown function -1 48551 48721
YP_009209099.1 NC_028914_p60 esterase/lipase phrog_789 esterase/lipase other -1 42248 43075
YP_009209104.1 NC_028914_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 44615 45412
YP_009209093.1 NC_028914_p54 hypothetical protein singleton unknown function unknown function -1 40019 40198
YP_009209112.1 NC_028914_p73 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 48285 48554
YP_009209105.1 NC_028914_p66 hypothetical protein singleton unknown function unknown function -1 45421 45498
YP_009209067.1 NC_028914_p28 minor tail protein phrog_352 minor tail protein tail 1 24798 25265
YP_009209051.1 NC_028914_p12 portal protein phrog_104 portal protein head and packaging 1 10056 11552
YP_009209059.1 NC_028914_p20 head-tail connector phrog_321 tail completion or Neck1 protein connector 1 15303 15647
YP_009209103.1 NC_028914_p64 phosphoribosyltransferase phrog_2068 phosphoribosyl transferase other -1 43936 44592
YP_009209055.1 NC_028914_p16 head-tail connector phrog_748 head-tail connector protein connector 1 14229 14390
YP_009209057.1 NC_028914_p18 head-tail connector phrog_2348 unknown function unknown function 1 14765 14920
YP_009209081.1 NC_028914_p42 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 31466 33301
YP_009209075.1 NC_028914_p36 hypothetical protein phrog_980 unknown function unknown function -1 29933 30232
YP_009209088.1 NC_028914_p49 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 35663 37720
YP_009209045.1 NC_028914_p6 tail protein phrog_819 tail protein tail 1 3589 4512
YP_009209070.1 NC_028914_p31 minor tail protein phrog_2235 minor tail protein tail 1 27051 27377
YP_009209096.1 NC_028914_p57 DNA methylase phrog_363 DNA methyltransferase other -1 41055 41732
YP_009209079.1 NC_028914_p40 hypothetical protein phrog_3643 unknown function unknown function -1 30966 31172
YP_009209091.1 NC_028914_p52 phosphoesterase phrog_221 metallo-phosphoesterase other -1 38758 39531