| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028915 |
Definition |
Staphylococcus phage B236, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
43228 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
35.55 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009209189.1 | NC_028915_p66 | amidase | phrog_489 | endolysin | lysis | 1 | 40479 | 41900 |
| YP_009209167.1 | NC_028915_p44 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 21400 | 21996 |
| YP_009209132.1 | NC_028915_p9 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 5387 | 5572 |
| YP_009209137.1 | NC_028915_p14 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 7043 | 7204 |
| YP_009209166.1 | NC_028915_p43 | head morphogenesis domain protein | phrog_115 | minor head protein | head and packaging | 1 | 20322 | 21302 |
| YP_009209129.1 | NC_028915_p6 | hypothetical protein | phrog_1796 | unknown function | unknown function | 1 | 3916 | 4140 |
| YP_009209130.1 | NC_028915_p7 | hypothetical protein | phrog_1534 | unknown function | unknown function | 1 | 4180 | 4359 |
| YP_009209170.1 | NC_028915_p47 | head-tail connector protein | phrog_1161 | head-tail adaptor | connector | 1 | 23184 | 23498 |
| YP_009209147.1 | NC_028915_p24 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 12116 | 12346 |
| YP_009209142.1 | NC_028915_p19 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8843 | 9538 |
| YP_009209183.1 | NC_028915_p60 | XkdX superfamily protein | phrog_134 | unknown function | unknown function | 1 | 35988 | 36170 |
| YP_009209185.1 | NC_028915_p62 | CHAP-domain tail tip cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36646 | 38520 |
| YP_009209144.1 | NC_028915_p21 | replicative helicase inhibitor-like protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10316 | 10672 |
| YP_009209141.1 | NC_028915_p18 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8404 | 8829 |
| YP_009209160.1 | NC_028915_p37 | hypothetical protein | phrog_555 | unknown function | unknown function | 1 | 16101 | 16337 |
| YP_009209179.1 | NC_028915_p56 | tail endopeptidase | phrog_663 | minor head protein | head and packaging | 1 | 29990 | 31876 |
| YP_009209139.1 | NC_028915_p16 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 7567 | 7788 |
| YP_009209150.1 | NC_028915_p27 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12951 | 13310 |
| YP_009209162.1 | NC_028915_p39 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 16504 | 16905 |
| YP_009209174.1 | NC_028915_p51 | major tail protein | phrog_238 | major tail protein | tail | 1 | 24663 | 25223 |
| YP_009209125.1 | NC_028915_p2 | PemK-like phage protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 1313 | 1993 |
| YP_009209172.1 | NC_028915_p49 | tail-component | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23813 | 24226 |
| YP_009209161.1 | NC_028915_p38 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16327 | 16503 |
| YP_009209173.1 | NC_028915_p50 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 24239 | 24676 |
| YP_009209145.1 | NC_028915_p22 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 10669 | 11910 |
| YP_009209134.1 | NC_028915_p11 | hypothetical protein | phrog_4309 | unknown function | unknown function | 1 | 6342 | 6557 |
| YP_009209165.1 | NC_028915_p42 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 18905 | 20383 |
| YP_009209146.1 | NC_028915_p23 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 11907 | 12122 |
| YP_009209177.1 | NC_028915_p54 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 26144 | 29029 |
| YP_009209131.1 | NC_028915_p8 | hypothetical protein | phrog_4989 | unknown function | unknown function | -1 | 4460 | 4942 |
| YP_009209159.1 | NC_028915_p36 | hypothetical protein | phrog_2334 | transcriptional regulator | transcription regulation | 1 | 15818 | 16108 |
| YP_009209187.1 | NC_028915_p64 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 39776 | 40171 |
| YP_009209181.1 | NC_028915_p58 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 33787 | 35610 |
| YP_009209157.1 | NC_028915_p34 | hypothetical protein | phrog_3521 | unknown function | unknown function | 1 | 15365 | 15538 |
| YP_009209186.1 | NC_028915_p63 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 38533 | 39771 |
| YP_009209180.1 | NC_028915_p57 | minor structural protein | phrog_287 | minor tail protein | tail | 1 | 31889 | 33787 |
| YP_009209153.1 | NC_028915_p30 | hypothetical protein | phrog_1235 | unknown function | unknown function | 1 | 13785 | 13985 |
| YP_009209188.1 | NC_028915_p65 | holin | phrog_263 | holin | lysis | 1 | 40226 | 40501 |
| YP_009209168.1 | NC_028915_p45 | capsid protein | phrog_544 | major head protein | head and packaging | 1 | 22017 | 22841 |
| YP_009209182.1 | NC_028915_p59 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 35610 | 35987 |
| YP_009209138.1 | NC_028915_p15 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 7261 | 7557 |
| YP_009209151.1 | NC_028915_p28 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 13311 | 13559 |
| YP_009209124.1 | NC_028915_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 53 | 1102 |
| YP_009209126.1 | NC_028915_p3 | cI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2029 | 2748 |
| YP_009209190.1 | NC_028915_p67 | exfoliative toxin A | phrog_13651 | unknown function | unknown function | 1 | 42026 | 42868 |
| YP_009209133.1 | NC_028915_p10 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 5574 | 6326 |
| YP_009209176.1 | NC_028915_p53 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 25824 | 26141 |
| YP_009209171.1 | NC_028915_p48 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 23491 | 23826 |
| YP_009209178.1 | NC_028915_p55 | Siphovirus-type tail component | phrog_33 | distal tail protein Dit | tail | 1 | 29044 | 29979 |
| YP_009209156.1 | NC_028915_p33 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14768 | 15328 |
| YP_009209128.1 | NC_028915_p5 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 3124 | 3915 |
| YP_009209152.1 | NC_028915_p29 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 13565 | 13828 |
| YP_009209164.1 | NC_028915_p41 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 17740 | 18951 |
| YP_009209184.1 | NC_028915_p61 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36211 | 36444 |
| YP_009209143.1 | NC_028915_p20 | replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9510 | 10316 |
| YP_009209149.1 | NC_028915_p26 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12765 | 12950 |
| YP_009209155.1 | NC_028915_p32 | HNH endonuclease domain protein | phrog_1891 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14214 | 14768 |
| YP_009209140.1 | NC_028915_p17 | single-strand annealing SAK3-like protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7781 | 8404 |
| YP_009209148.1 | NC_028915_p25 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 12356 | 12760 |
| YP_009209154.1 | NC_028915_p31 | hypothetical protein | phrog_2044 | RNA polymerase beta subunit | DNA, RNA and nucleotide metabolism | 1 | 13978 | 14217 |
| YP_009209163.1 | NC_028915_p40 | terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 17256 | 17750 |
| YP_009209135.1 | NC_028915_p12 | hypothetical protein | phrog_2222 | unknown function | unknown function | -1 | 6513 | 6767 |
| YP_009209158.1 | NC_028915_p35 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 15555 | 15821 |
| YP_009209136.1 | NC_028915_p13 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 6829 | 7050 |
| YP_009209169.1 | NC_028915_p46 | Rho termination factor domain protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 22858 | 23184 |
| YP_009209175.1 | NC_028915_p52 | tail protein | phrog_183 | tail chaperone protein | tail | 1 | 25285 | 25779 |
| YP_009209127.1 | NC_028915_p4 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2890 | 3108 |