Genomic map of Staphylococcus phage B236 (NC_028915)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028915
Definition
Staphylococcus phage B236, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
43228
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
35.55
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009209189.1 NC_028915_p66 amidase phrog_489 endolysin lysis 1 40479 41900
YP_009209167.1 NC_028915_p44 minor structural protein phrog_194 head scaffolding protein head and packaging 1 21400 21996
YP_009209132.1 NC_028915_p9 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 5387 5572
YP_009209137.1 NC_028915_p14 hypothetical protein phrog_369 unknown function unknown function 1 7043 7204
YP_009209166.1 NC_028915_p43 head morphogenesis domain protein phrog_115 minor head protein head and packaging 1 20322 21302
YP_009209129.1 NC_028915_p6 hypothetical protein phrog_1796 unknown function unknown function 1 3916 4140
YP_009209130.1 NC_028915_p7 hypothetical protein phrog_1534 unknown function unknown function 1 4180 4359
YP_009209170.1 NC_028915_p47 head-tail connector protein phrog_1161 head-tail adaptor connector 1 23184 23498
YP_009209147.1 NC_028915_p24 hypothetical protein phrog_433 unknown function unknown function 1 12116 12346
YP_009209142.1 NC_028915_p19 hypothetical protein phrog_398 unknown function unknown function 1 8843 9538
YP_009209183.1 NC_028915_p60 XkdX superfamily protein phrog_134 unknown function unknown function 1 35988 36170
YP_009209185.1 NC_028915_p62 CHAP-domain tail tip cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other 1 36646 38520
YP_009209144.1 NC_028915_p21 replicative helicase inhibitor-like protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 10316 10672
YP_009209141.1 NC_028915_p18 ssDNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8404 8829
YP_009209160.1 NC_028915_p37 hypothetical protein phrog_555 unknown function unknown function 1 16101 16337
YP_009209179.1 NC_028915_p56 tail endopeptidase phrog_663 minor head protein head and packaging 1 29990 31876
YP_009209139.1 NC_028915_p16 hypothetical protein phrog_946 unknown function unknown function 1 7567 7788
YP_009209150.1 NC_028915_p27 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12951 13310
YP_009209162.1 NC_028915_p39 hypothetical protein phrog_1058 unknown function unknown function 1 16504 16905
YP_009209174.1 NC_028915_p51 major tail protein phrog_238 major tail protein tail 1 24663 25223
YP_009209125.1 NC_028915_p2 PemK-like phage protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 1313 1993
YP_009209172.1 NC_028915_p49 tail-component phrog_5 tail completion or Neck1 protein connector 1 23813 24226
YP_009209161.1 NC_028915_p38 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 16327 16503
YP_009209173.1 NC_028915_p50 hypothetical protein phrog_176 tail terminator connector 1 24239 24676
YP_009209145.1 NC_028915_p22 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 10669 11910
YP_009209134.1 NC_028915_p11 hypothetical protein phrog_4309 unknown function unknown function 1 6342 6557
YP_009209165.1 NC_028915_p42 portal protein phrog_64 portal protein head and packaging 1 18905 20383
YP_009209146.1 NC_028915_p23 hypothetical protein phrog_3161 unknown function unknown function 1 11907 12122
YP_009209177.1 NC_028915_p54 tape measure protein phrog_58 tail length tape measure protein tail 1 26144 29029
YP_009209131.1 NC_028915_p8 hypothetical protein phrog_4989 unknown function unknown function -1 4460 4942
YP_009209159.1 NC_028915_p36 hypothetical protein phrog_2334 transcriptional regulator transcription regulation 1 15818 16108
YP_009209187.1 NC_028915_p64 hypothetical protein phrog_1262 unknown function unknown function 1 39776 40171
YP_009209181.1 NC_028915_p58 hypothetical protein phrog_257 minor tail protein tail 1 33787 35610
YP_009209157.1 NC_028915_p34 hypothetical protein phrog_3521 unknown function unknown function 1 15365 15538
YP_009209186.1 NC_028915_p63 tail fiber protein phrog_1125 tail fiber protein tail 1 38533 39771
YP_009209180.1 NC_028915_p57 minor structural protein phrog_287 minor tail protein tail 1 31889 33787
YP_009209153.1 NC_028915_p30 hypothetical protein phrog_1235 unknown function unknown function 1 13785 13985
YP_009209188.1 NC_028915_p65 holin phrog_263 holin lysis 1 40226 40501
YP_009209168.1 NC_028915_p45 capsid protein phrog_544 major head protein head and packaging 1 22017 22841
YP_009209182.1 NC_028915_p59 hypothetical protein phrog_300 tail fiber protein tail 1 35610 35987
YP_009209138.1 NC_028915_p15 hypothetical protein phrog_401 unknown function unknown function 1 7261 7557
YP_009209151.1 NC_028915_p28 hypothetical protein phrog_258 virulence associated other 1 13311 13559
YP_009209124.1 NC_028915_p1 integrase phrog_1 integrase integration and excision -1 53 1102
YP_009209126.1 NC_028915_p3 cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 2029 2748
YP_009209190.1 NC_028915_p67 exfoliative toxin A phrog_13651 unknown function unknown function 1 42026 42868
YP_009209133.1 NC_028915_p10 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 5574 6326
YP_009209176.1 NC_028915_p53 hypothetical protein phrog_1404 tail protein tail 1 25824 26141
YP_009209171.1 NC_028915_p48 head-tail adaptor phrog_25 head closure Hc1 connector 1 23491 23826
YP_009209178.1 NC_028915_p55 Siphovirus-type tail component phrog_33 distal tail protein Dit tail 1 29044 29979
YP_009209156.1 NC_028915_p33 dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14768 15328
YP_009209128.1 NC_028915_p5 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 3124 3915
YP_009209152.1 NC_028915_p29 hypothetical protein phrog_266 unknown function unknown function 1 13565 13828
YP_009209164.1 NC_028915_p41 terminase large subunit phrog_2 terminase large subunit head and packaging 1 17740 18951
YP_009209184.1 NC_028915_p61 hypothetical protein phrog_276 unknown function unknown function 1 36211 36444
YP_009209143.1 NC_028915_p20 replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 9510 10316
YP_009209149.1 NC_028915_p26 hypothetical protein phrog_299 unknown function unknown function 1 12765 12950
YP_009209155.1 NC_028915_p32 HNH endonuclease domain protein phrog_1891 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14214 14768
YP_009209140.1 NC_028915_p17 single-strand annealing SAK3-like protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7781 8404
YP_009209148.1 NC_028915_p25 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 12356 12760
YP_009209154.1 NC_028915_p31 hypothetical protein phrog_2044 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 13978 14217
YP_009209163.1 NC_028915_p40 terminase small subunit phrog_1595 terminase small subunit head and packaging 1 17256 17750
YP_009209135.1 NC_028915_p12 hypothetical protein phrog_2222 unknown function unknown function -1 6513 6767
YP_009209158.1 NC_028915_p35 hypothetical protein phrog_419 unknown function unknown function 1 15555 15821
YP_009209136.1 NC_028915_p13 hypothetical protein phrog_989 unknown function unknown function 1 6829 7050
YP_009209169.1 NC_028915_p46 Rho termination factor domain protein phrog_390 Arc-like repressor transcription regulation 1 22858 23184
YP_009209175.1 NC_028915_p52 tail protein phrog_183 tail chaperone protein tail 1 25285 25779
YP_009209127.1 NC_028915_p4 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 2890 3108