| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028917 |
Definition |
Staphylococcus phage 3MRA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
41931 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
35.41 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009209248.1 | NC_028917_p5 | hypothetical protein | phrog_134 | unknown function | unknown function | -1 | 4028 | 4210 |
| YP_009209253.1 | NC_028917_p10 | tail protein | phrog_28208 | tail protein | tail | -1 | 10219 | 10575 |
| YP_009209265.1 | NC_028917_p22 | portal protein | phrog_64 | portal protein | head and packaging | -1 | 19742 | 20758 |
| YP_009209308.1 | NC_028917_p65 | integrase | phrog_1 | integrase | integration and excision | 1 | 38339 | 39385 |
| YP_009209252.1 | NC_028917_p9 | minor structural protein | phrog_663 | minor head protein | head and packaging | -1 | 8322 | 10208 |
| YP_009209267.1 | NC_028917_p24 | terminase | phrog_2 | terminase large subunit | head and packaging | -1 | 21162 | 22385 |
| YP_009209301.1 | NC_028917_p58 | hypothetical protein | phrog_1534 | unknown function | unknown function | -1 | 35246 | 35425 |
| YP_009209304.1 | NC_028917_p61 | toxin-antitoxin system | phrog_87 | metallo-protease | other | 1 | 36631 | 37101 |
| YP_009209293.1 | NC_028917_p50 | hypothetical protein | phrog_401 | unknown function | unknown function | -1 | 32413 | 32739 |
| YP_009209274.1 | NC_028917_p31 | dUTP phosphatase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24665 | 25201 |
| YP_009209245.1 | NC_028917_p2 | tail fiber | phrog_1125 | tail fiber protein | tail | -1 | 611 | 1666 |
| YP_009209283.1 | NC_028917_p40 | hypothetical protein | phrog_433 | unknown function | unknown function | -1 | 27562 | 27783 |
| YP_009209259.1 | NC_028917_p16 | tail protein | phrog_176 | tail terminator | connector | -1 | 15519 | 15944 |
| YP_009209291.1 | NC_028917_p48 | Gam-like protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | -1 | 31626 | 32159 |
| YP_009209275.1 | NC_028917_p32 | hypothetical protein | phrog_1235 | unknown function | unknown function | -1 | 25194 | 25382 |
| YP_009209280.1 | NC_028917_p37 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | -1 | 26340 | 26957 |
| YP_009209273.1 | NC_028917_p30 | hypothetical protein | phrog_2027 | unknown function | unknown function | -1 | 24383 | 24619 |
| YP_009209294.1 | NC_028917_p51 | hypothetical protein | phrog_983 | unknown function | unknown function | -1 | 32678 | 32980 |
| YP_009209269.1 | NC_028917_p26 | hypothetical protein | phrog_1058 | unknown function | unknown function | -1 | 23225 | 23626 |
| YP_009209300.1 | NC_028917_p57 | hypothetical protein | phrog_3240 | unknown function | unknown function | 1 | 35017 | 35256 |
| YP_009209255.1 | NC_028917_p12 | hypothetical protein | phrog_31249 | unknown function | unknown function | 1 | 11317 | 12036 |
| YP_009209282.1 | NC_028917_p39 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 27148 | 27552 |
| YP_009209309.1 | NC_028917_p66 | endolysin | phrog_635 | endolysin | lysis | -1 | 40270 | 41742 |
| YP_009209284.1 | NC_028917_p41 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | -1 | 27796 | 27954 |
| YP_009209270.1 | NC_028917_p27 | RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | -1 | 23627 | 23800 |
| YP_009209264.1 | NC_028917_p21 | minor head protein | phrog_115 | minor head protein | head and packaging | -1 | 18823 | 19788 |
| YP_009209305.1 | NC_028917_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37082 | 37216 |
| YP_009209254.1 | NC_028917_p11 | tapemeasure | phrog_58 | tail length tape measure protein | tail | -1 | 11175 | 14045 |
| YP_009209261.1 | NC_028917_p18 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | -1 | 16356 | 16574 |
| YP_009209257.1 | NC_028917_p14 | hypothetical protein | phrog_183 | tail chaperone protein | tail | -1 | 14393 | 14758 |
| YP_009209277.1 | NC_028917_p34 | hypothetical protein | phrog_258 | virulence associated | other | -1 | 25620 | 25868 |
| YP_009209307.1 | NC_028917_p64 | hypothetical protein | phrog_21734 | unknown function | unknown function | 1 | 37799 | 38269 |
| YP_009209247.1 | NC_028917_p4 | hypothetical protein | phrog_276 | unknown function | unknown function | -1 | 3787 | 3987 |
| YP_009209246.1 | NC_028917_p3 | cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | -1 | 1679 | 3553 |
| YP_009209299.1 | NC_028917_p56 | anti-repressor | phrog_130 | anti-repressor Ant | transcription regulation | -1 | 34169 | 34960 |
| YP_009209271.1 | NC_028917_p28 | hypothetical protein | phrog_301 | secreted protein | other | -1 | 23797 | 24183 |
| YP_009209278.1 | NC_028917_p35 | hypothetical protein | phrog_987 | unknown function | unknown function | -1 | 25877 | 26077 |
| YP_009209296.1 | NC_028917_p53 | hypothetical protein | phrog_989 | unknown function | unknown function | -1 | 33226 | 33441 |
| YP_009209250.1 | NC_028917_p7 | hypothetical protein | phrog_257 | minor tail protein | tail | -1 | 4588 | 6411 |
| YP_009209260.1 | NC_028917_p17 | tail protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 15947 | 16405 |
| YP_009209287.1 | NC_028917_p44 | hypothetical protein | phrog_398 | unknown function | unknown function | -1 | 29554 | 30066 |
| YP_009209286.1 | NC_028917_p43 | replication initiation | phrog_1163 | unknown function | unknown function | -1 | 28749 | 29582 |
| YP_009209256.1 | NC_028917_p13 | hypothetical protein | phrog_12040 | unknown function | unknown function | -1 | 14064 | 14213 |
| YP_009209258.1 | NC_028917_p15 | major tail protein | phrog_238 | major tail protein | tail | -1 | 14962 | 15357 |
| YP_009209298.1 | NC_028917_p55 | superantigen-encoding pathogenicity island protein | phrog_1796 | unknown function | unknown function | -1 | 33944 | 34168 |
| YP_009209281.1 | NC_028917_p38 | hypothetical protein | phrog_299 | unknown function | unknown function | -1 | 26958 | 27143 |
| YP_009209263.1 | NC_028917_p20 | major capsid protein | phrog_10 | major head protein | head and packaging | -1 | 17213 | 18127 |
| YP_009209251.1 | NC_028917_p8 | major teichoic acid biosynthesis | phrog_287 | minor tail protein | tail | -1 | 6411 | 8309 |
| YP_009209288.1 | NC_028917_p45 | hypothetical protein | phrog_9093 | unknown function | unknown function | -1 | 30051 | 30245 |
| YP_009209266.1 | NC_028917_p23 | portal protein | singleton | unknown function | unknown function | -1 | 20824 | 21165 |
| YP_009209285.1 | NC_028917_p42 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 27951 | 28583 |
| YP_009209249.1 | NC_028917_p6 | hypothetical protein | phrog_300 | tail fiber protein | tail | -1 | 4211 | 4588 |
| YP_009209272.1 | NC_028917_p29 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | -1 | 24180 | 24386 |
| YP_009209289.1 | NC_028917_p46 | single-stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30258 | 30812 |
| YP_009209244.1 | NC_028917_p1 | hypothetical protein | phrog_1262 | unknown function | unknown function | -1 | 29 | 424 |
| YP_009209297.1 | NC_028917_p54 | hypothetical protein | phrog_2305 | unknown function | unknown function | -1 | 33455 | 33904 |
| YP_009209290.1 | NC_028917_p47 | dnaA domain protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 30843 | 31622 |
| YP_009209302.1 | NC_028917_p59 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | -1 | 35440 | 35883 |
| YP_009209262.1 | NC_028917_p19 | head completion protein | phrog_1161 | head-tail adaptor | connector | -1 | 16703 | 17053 |
| YP_009209276.1 | NC_028917_p33 | hypothetical protein | phrog_266 | unknown function | unknown function | -1 | 25351 | 25614 |
| YP_009209306.1 | NC_028917_p63 | hypothetical protein | phrog_24881 | unknown function | unknown function | 1 | 37285 | 37806 |
| YP_009209279.1 | NC_028917_p36 | hypothetical protein | phrog_236 | nucleotide kinase | other | -1 | 26080 | 26340 |
| YP_009209295.1 | NC_028917_p52 | hypothetical protein | phrog_13915 | unknown function | unknown function | 1 | 33103 | 33213 |
| YP_009209303.1 | NC_028917_p60 | repressor | phrog_8 | transcriptional regulator | transcription regulation | 1 | 36304 | 36627 |
| YP_009209292.1 | NC_028917_p49 | hypothetical protein | phrog_3119 | unknown function | unknown function | -1 | 32152 | 32403 |
| YP_009209268.1 | NC_028917_p25 | terminase small subunit | singleton | unknown function | unknown function | -1 | 22378 | 22545 |