Genomic map of Staphylococcus phage 3MRA (NC_028917)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028917
Definition
Staphylococcus phage 3MRA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
41931
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
35.41
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009209248.1 NC_028917_p5 hypothetical protein phrog_134 unknown function unknown function -1 4028 4210
YP_009209253.1 NC_028917_p10 tail protein phrog_28208 tail protein tail -1 10219 10575
YP_009209265.1 NC_028917_p22 portal protein phrog_64 portal protein head and packaging -1 19742 20758
YP_009209308.1 NC_028917_p65 integrase phrog_1 integrase integration and excision 1 38339 39385
YP_009209252.1 NC_028917_p9 minor structural protein phrog_663 minor head protein head and packaging -1 8322 10208
YP_009209267.1 NC_028917_p24 terminase phrog_2 terminase large subunit head and packaging -1 21162 22385
YP_009209301.1 NC_028917_p58 hypothetical protein phrog_1534 unknown function unknown function -1 35246 35425
YP_009209304.1 NC_028917_p61 toxin-antitoxin system phrog_87 metallo-protease other 1 36631 37101
YP_009209293.1 NC_028917_p50 hypothetical protein phrog_401 unknown function unknown function -1 32413 32739
YP_009209274.1 NC_028917_p31 dUTP phosphatase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism -1 24665 25201
YP_009209245.1 NC_028917_p2 tail fiber phrog_1125 tail fiber protein tail -1 611 1666
YP_009209283.1 NC_028917_p40 hypothetical protein phrog_433 unknown function unknown function -1 27562 27783
YP_009209259.1 NC_028917_p16 tail protein phrog_176 tail terminator connector -1 15519 15944
YP_009209291.1 NC_028917_p48 Gam-like protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism -1 31626 32159
YP_009209275.1 NC_028917_p32 hypothetical protein phrog_1235 unknown function unknown function -1 25194 25382
YP_009209280.1 NC_028917_p37 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism -1 26340 26957
YP_009209273.1 NC_028917_p30 hypothetical protein phrog_2027 unknown function unknown function -1 24383 24619
YP_009209294.1 NC_028917_p51 hypothetical protein phrog_983 unknown function unknown function -1 32678 32980
YP_009209269.1 NC_028917_p26 hypothetical protein phrog_1058 unknown function unknown function -1 23225 23626
YP_009209300.1 NC_028917_p57 hypothetical protein phrog_3240 unknown function unknown function 1 35017 35256
YP_009209255.1 NC_028917_p12 hypothetical protein phrog_31249 unknown function unknown function 1 11317 12036
YP_009209282.1 NC_028917_p39 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 27148 27552
YP_009209309.1 NC_028917_p66 endolysin phrog_635 endolysin lysis -1 40270 41742
YP_009209284.1 NC_028917_p41 hypothetical protein phrog_809 transcriptional regulator transcription regulation -1 27796 27954
YP_009209270.1 NC_028917_p27 RinB phrog_152 RinB-like transcriptional activator transcription regulation -1 23627 23800
YP_009209264.1 NC_028917_p21 minor head protein phrog_115 minor head protein head and packaging -1 18823 19788
YP_009209305.1 NC_028917_p62 hypothetical protein singleton unknown function unknown function -1 37082 37216
YP_009209254.1 NC_028917_p11 tapemeasure phrog_58 tail length tape measure protein tail -1 11175 14045
YP_009209261.1 NC_028917_p18 head-tail adaptor phrog_25 head closure Hc1 connector -1 16356 16574
YP_009209257.1 NC_028917_p14 hypothetical protein phrog_183 tail chaperone protein tail -1 14393 14758
YP_009209277.1 NC_028917_p34 hypothetical protein phrog_258 virulence associated other -1 25620 25868
YP_009209307.1 NC_028917_p64 hypothetical protein phrog_21734 unknown function unknown function 1 37799 38269
YP_009209247.1 NC_028917_p4 hypothetical protein phrog_276 unknown function unknown function -1 3787 3987
YP_009209246.1 NC_028917_p3 cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other -1 1679 3553
YP_009209299.1 NC_028917_p56 anti-repressor phrog_130 anti-repressor Ant transcription regulation -1 34169 34960
YP_009209271.1 NC_028917_p28 hypothetical protein phrog_301 secreted protein other -1 23797 24183
YP_009209278.1 NC_028917_p35 hypothetical protein phrog_987 unknown function unknown function -1 25877 26077
YP_009209296.1 NC_028917_p53 hypothetical protein phrog_989 unknown function unknown function -1 33226 33441
YP_009209250.1 NC_028917_p7 hypothetical protein phrog_257 minor tail protein tail -1 4588 6411
YP_009209260.1 NC_028917_p17 tail protein phrog_5 tail completion or Neck1 protein connector -1 15947 16405
YP_009209287.1 NC_028917_p44 hypothetical protein phrog_398 unknown function unknown function -1 29554 30066
YP_009209286.1 NC_028917_p43 replication initiation phrog_1163 unknown function unknown function -1 28749 29582
YP_009209256.1 NC_028917_p13 hypothetical protein phrog_12040 unknown function unknown function -1 14064 14213
YP_009209258.1 NC_028917_p15 major tail protein phrog_238 major tail protein tail -1 14962 15357
YP_009209298.1 NC_028917_p55 superantigen-encoding pathogenicity island protein phrog_1796 unknown function unknown function -1 33944 34168
YP_009209281.1 NC_028917_p38 hypothetical protein phrog_299 unknown function unknown function -1 26958 27143
YP_009209263.1 NC_028917_p20 major capsid protein phrog_10 major head protein head and packaging -1 17213 18127
YP_009209251.1 NC_028917_p8 major teichoic acid biosynthesis phrog_287 minor tail protein tail -1 6411 8309
YP_009209288.1 NC_028917_p45 hypothetical protein phrog_9093 unknown function unknown function -1 30051 30245
YP_009209266.1 NC_028917_p23 portal protein singleton unknown function unknown function -1 20824 21165
YP_009209285.1 NC_028917_p42 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism -1 27951 28583
YP_009209249.1 NC_028917_p6 hypothetical protein phrog_300 tail fiber protein tail -1 4211 4588
YP_009209272.1 NC_028917_p29 hypothetical protein phrog_278 transcriptional regulator transcription regulation -1 24180 24386
YP_009209289.1 NC_028917_p46 single-stranded DNA-binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 30258 30812
YP_009209244.1 NC_028917_p1 hypothetical protein phrog_1262 unknown function unknown function -1 29 424
YP_009209297.1 NC_028917_p54 hypothetical protein phrog_2305 unknown function unknown function -1 33455 33904
YP_009209290.1 NC_028917_p47 dnaA domain protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 30843 31622
YP_009209302.1 NC_028917_p59 hypothetical protein phrog_847 anti-repressor Ant transcription regulation -1 35440 35883
YP_009209262.1 NC_028917_p19 head completion protein phrog_1161 head-tail adaptor connector -1 16703 17053
YP_009209276.1 NC_028917_p33 hypothetical protein phrog_266 unknown function unknown function -1 25351 25614
YP_009209306.1 NC_028917_p63 hypothetical protein phrog_24881 unknown function unknown function 1 37285 37806
YP_009209279.1 NC_028917_p36 hypothetical protein phrog_236 nucleotide kinase other -1 26080 26340
YP_009209295.1 NC_028917_p52 hypothetical protein phrog_13915 unknown function unknown function 1 33103 33213
YP_009209303.1 NC_028917_p60 repressor phrog_8 transcriptional regulator transcription regulation 1 36304 36627
YP_009209292.1 NC_028917_p49 hypothetical protein phrog_3119 unknown function unknown function -1 32152 32403
YP_009209268.1 NC_028917_p25 terminase small subunit singleton unknown function unknown function -1 22378 22545