| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028919 |
Definition |
Pseudomonas phage DL54, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Bruynoghevirus; unclassified Bruynoghevirus. |
DB of origin |
REFSEQ |
Length |
45673 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
52.39 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009209380.1 | NC_028919_p62 | hypothetical protein | phrog_10516 | unknown function | unknown function | -1 | 42146 | 42391 |
| YP_009209387.1 | NC_028919_p69 | hypothetical protein | phrog_9596 | unknown function | unknown function | -1 | 43840 | 44028 |
| YP_009209347.1 | NC_028919_p29 | homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23609 | 24058 |
| YP_009209321.1 | NC_028919_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2035 | 3483 |
| YP_009209323.1 | NC_028919_p5 | hypothetical protein | phrog_8161 | unknown function | unknown function | 1 | 5633 | 5848 |
| YP_009209368.1 | NC_028919_p50 | hypothetical protein | phrog_3815 | COOH.NH2 ligase | other | -1 | 36465 | 37265 |
| YP_009209386.1 | NC_028919_p68 | hypothetical protein | phrog_10887 | unknown function | unknown function | -1 | 43703 | 43843 |
| YP_009209322.1 | NC_028919_p4 | portal (connector) protein | phrog_1216 | portal protein | head and packaging | 1 | 3483 | 5603 |
| YP_009209370.1 | NC_028919_p52 | hypothetical protein | phrog_9504 | unknown function | unknown function | -1 | 38237 | 39199 |
| YP_009209385.1 | NC_028919_p67 | hypothetical protein | phrog_12073 | unknown function | unknown function | -1 | 43341 | 43523 |
| YP_009209338.1 | NC_028919_p20 | hypothetical protein | phrog_8295 | virion structural protein | head and packaging | 1 | 18700 | 19587 |
| YP_009209337.1 | NC_028919_p19 | hypothetical protein | phrog_6958 | virion structural protein | head and packaging | 1 | 15521 | 18688 |
| YP_009209383.1 | NC_028919_p65 | hypothetical protein | phrog_14185 | unknown function | unknown function | -1 | 42699 | 42974 |
| YP_009209369.1 | NC_028919_p51 | hypothetical protein | phrog_7973 | unknown function | unknown function | -1 | 37262 | 38218 |
| YP_009209342.1 | NC_028919_p24 | hypothetical protein | phrog_9960 | unknown function | unknown function | -1 | 20571 | 20789 |
| YP_009209381.1 | NC_028919_p63 | hypothetical protein | phrog_11682 | unknown function | unknown function | -1 | 42400 | 42546 |
| YP_009209349.1 | NC_028919_p31 | hypothetical protein | phrog_5033 | endolysin; inhibits RNA polymerase | lysis | -1 | 24314 | 24724 |
| YP_009209325.1 | NC_028919_p7 | capsid and scaffold protein | phrog_1328 | major head protein | head and packaging | 1 | 6859 | 7812 |
| YP_009209333.1 | NC_028919_p15 | hypothetical protein | phrog_7642 | unknown function | unknown function | 1 | 12115 | 12549 |
| YP_009209355.1 | NC_028919_p37 | hypothetical protein | phrog_9555 | unknown function | unknown function | -1 | 28114 | 28275 |
| YP_009209326.1 | NC_028919_p8 | hypothetical protein | phrog_3982 | unknown function | unknown function | 1 | 7861 | 8181 |
| YP_009209377.1 | NC_028919_p59 | hypothetical protein | phrog_4955 | unknown function | unknown function | -1 | 41457 | 41708 |
| YP_009209367.1 | NC_028919_p49 | hypothetical protein | phrog_4877 | unknown function | unknown function | -1 | 35903 | 36472 |
| YP_009209335.1 | NC_028919_p17 | hypothetical protein | phrog_27875 | unknown function | unknown function | 1 | 13601 | 13831 |
| YP_009209374.1 | NC_028919_p56 | hypothetical protein | phrog_29336 | unknown function | unknown function | -1 | 40469 | 40687 |
| YP_009209345.1 | NC_028919_p27 | hypothetical protein | phrog_7967 | unknown function | unknown function | -1 | 21733 | 22713 |
| YP_009209340.1 | NC_028919_p22 | hypothetical protein | phrog_8402 | unknown function | unknown function | -1 | 20165 | 20371 |
| YP_009209328.1 | NC_028919_p10 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 8822 | 9013 |
| YP_009209348.1 | NC_028919_p30 | hypothetical protein | phrog_8565 | unknown function | unknown function | -1 | 24058 | 24342 |
| YP_009209363.1 | NC_028919_p45 | hypothetical protein | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | -1 | 31962 | 32846 |
| YP_009209351.1 | NC_028919_p33 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 25419 | 27056 |
| YP_009209334.1 | NC_028919_p16 | hypothetical protein | phrog_7477 | unknown function | unknown function | 1 | 12530 | 13471 |
| YP_009209382.1 | NC_028919_p64 | hypothetical protein | phrog_16829 | unknown function | unknown function | -1 | 42533 | 42688 |
| YP_009209379.1 | NC_028919_p61 | hypothetical protein | phrog_9861 | unknown function | unknown function | -1 | 41875 | 42141 |
| YP_009209364.1 | NC_028919_p46 | hypothetical protein | phrog_9335 | unknown function | unknown function | -1 | 32977 | 33198 |
| YP_009209361.1 | NC_028919_p43 | hypothetical protein | phrog_8197 | unknown function | unknown function | -1 | 31187 | 31564 |
| YP_009209331.1 | NC_028919_p13 | hypothetical protein | phrog_3287 | virion structural protein | head and packaging | 1 | 9891 | 11432 |
| YP_009209324.1 | NC_028919_p6 | capsid and scaffold protein | phrog_3927 | head scaffolding protein | head and packaging | 1 | 5848 | 6840 |
| YP_009209352.1 | NC_028919_p34 | hypothetical protein | phrog_9754 | unknown function | unknown function | -1 | 27057 | 27254 |
| YP_009209341.1 | NC_028919_p23 | hypothetical protein | phrog_2251 | unknown function | unknown function | -1 | 20358 | 20567 |
| YP_009209378.1 | NC_028919_p60 | hypothetical protein | phrog_8294 | unknown function | unknown function | -1 | 41705 | 41875 |
| YP_009209384.1 | NC_028919_p66 | hypothetical protein | phrog_8365 | unknown function | unknown function | -1 | 42976 | 43209 |
| YP_009209362.1 | NC_028919_p44 | hypothetical protein | phrog_2520 | gamma-glutamyl cyclotransferase | moron, auxiliary metabolic gene and host takeover | -1 | 31564 | 31962 |
| YP_009209365.1 | NC_028919_p47 | hypothetical protein | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 33208 | 34740 |
| YP_009209350.1 | NC_028919_p32 | helix-destabilizing protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24795 | 25349 |
| YP_009209329.1 | NC_028919_p11 | hypothetical protein | phrog_8140 | unknown function | unknown function | 1 | 8997 | 9245 |
| YP_009209376.1 | NC_028919_p58 | hypothetical protein | phrog_8299 | unknown function | unknown function | -1 | 41032 | 41457 |
| YP_009209327.1 | NC_028919_p9 | hypothetical protein | phrog_2941 | virion structural protein | head and packaging | 1 | 8185 | 8811 |
| YP_009209389.1 | NC_028919_p71 | hypothetical protein | phrog_14276 | unknown function | unknown function | -1 | 44617 | 44922 |
| YP_009209320.1 | NC_028919_p2 | baseplate hub protein | phrog_7 | endolysin | lysis | 1 | 1637 | 2035 |
| YP_009209371.1 | NC_028919_p53 | hypothetical protein | phrog_23893 | unknown function | unknown function | -1 | 39270 | 39398 |
| YP_009209344.1 | NC_028919_p26 | hypothetical protein | phrog_14437 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 21540 | 21779 |
| YP_009209332.1 | NC_028919_p14 | hypothetical protein | phrog_8092 | unknown function | unknown function | 1 | 11429 | 12118 |
| YP_009209346.1 | NC_028919_p28 | DNA polymerase I | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 22694 | 23524 |
| YP_009209375.1 | NC_028919_p57 | hypothetical protein | phrog_11110 | unknown function | unknown function | -1 | 40689 | 40901 |
| YP_009209354.1 | NC_028919_p36 | hypothetical protein | phrog_7045 | holin | lysis | -1 | 27845 | 28123 |
| YP_009209330.1 | NC_028919_p12 | tail fibers protein | phrog_5795 | tail protein | tail | 1 | 9235 | 9882 |
| YP_009209358.1 | NC_028919_p40 | hypothetical protein | phrog_4590 | unknown function | unknown function | -1 | 28706 | 29002 |
| YP_009209339.1 | NC_028919_p21 | hypothetical protein | phrog_8259 | unknown function | unknown function | 1 | 19602 | 19958 |
| YP_009209388.1 | NC_028919_p70 | hypothetical protein | phrog_1448 | unknown function | unknown function | -1 | 44131 | 44613 |
| YP_009209319.1 | NC_028919_p1 | hypothetical protein | phrog_51 | terminase small subunit | head and packaging | 1 | 1147 | 1605 |
| YP_009209366.1 | NC_028919_p48 | hypothetical protein | phrog_7631 | amidoligase enzyme | other | -1 | 34752 | 35927 |
| YP_009209343.1 | NC_028919_p25 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 20786 | 21547 |
| YP_009209357.1 | NC_028919_p39 | hypothetical protein | phrog_12255 | unknown function | unknown function | -1 | 28437 | 28670 |
| YP_009209373.1 | NC_028919_p55 | hypothetical protein | phrog_23984 | unknown function | unknown function | -1 | 40244 | 40462 |
| YP_009209359.1 | NC_028919_p41 | DNA polymerase | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 28984 | 29493 |
| YP_009209336.1 | NC_028919_p18 | hypothetical protein | phrog_7725 | virion structural protein | head and packaging | 1 | 13856 | 15370 |
| YP_009209353.1 | NC_028919_p35 | hypothetical protein | phrog_7819 | tail length tape measure protein | tail | -1 | 27259 | 27768 |
| YP_009209372.1 | NC_028919_p54 | hypothetical protein | phrog_200 | lipoprotein | other | -1 | 39410 | 40234 |
| YP_009209360.1 | NC_028919_p42 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | -1 | 29477 | 31186 |
| YP_009209356.1 | NC_028919_p38 | hypothetical protein | phrog_9813 | unknown function | unknown function | -1 | 28265 | 28456 |