| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028920 |
Definition |
Mycobacterium phage Abrogate, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52530 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
63.75 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009209438.1 | NC_028920_p49 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36755 | 36895 |
| YP_009209413.1 | NC_028920_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16207 | 16584 |
| YP_009209468.1 | NC_028920_p79 | hypothetical protein | phrog_9043 | unknown function | unknown function | -1 | 48501 | 48944 |
| YP_009209392.1 | NC_028920_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1659 | 2093 |
| YP_009209472.1 | NC_028920_p83 | hypothetical protein | phrog_17684 | unknown function | unknown function | -1 | 49645 | 49758 |
| YP_009209431.1 | NC_028920_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32541 | 32810 |
| YP_009209471.1 | NC_028920_p82 | hypothetical protein | phrog_5798 | unknown function | unknown function | -1 | 49313 | 49585 |
| YP_009209448.1 | NC_028920_p59 | endonuclase VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41845 | 42339 |
| YP_009209440.1 | NC_028920_p51 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38615 | 38794 |
| YP_009209475.1 | NC_028920_p86 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 50418 | 50519 |
| YP_009209396.1 | NC_028920_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 4028 | 4720 |
| YP_009209409.1 | NC_028920_p20 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14389 | 14784 |
| YP_009209473.1 | NC_028920_p84 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 49856 | 50203 |
| YP_009209398.1 | NC_028920_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4995 | 5252 |
| YP_009209446.1 | NC_028920_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40531 | 40665 |
| YP_009209416.1 | NC_028920_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21697 | 21879 |
| YP_009209422.1 | NC_028920_p33 | D-ala-D-ala-carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26724 | 28202 |
| YP_009209434.1 | NC_028920_p45 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35055 | 35285 |
| YP_009209457.1 | NC_028920_p68 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 44544 | 44702 |
| YP_009209404.1 | NC_028920_p15 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11727 | 12239 |
| YP_009209463.1 | NC_028920_p74 | hypothetical protein | phrog_26295 | unknown function | unknown function | -1 | 47393 | 47653 |
| YP_009209470.1 | NC_028920_p81 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49167 | 49316 |
| YP_009209400.1 | NC_028920_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6675 | 7643 |
| YP_009209432.1 | NC_028920_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32807 | 33163 |
| YP_009209402.1 | NC_028920_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9348 | 10790 |
| YP_009209395.1 | NC_028920_p6 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2939 | 4009 |
| YP_009209461.1 | NC_028920_p72 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46309 | 46995 |
| YP_009209467.1 | NC_028920_p78 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48304 | 48471 |
| YP_009209427.1 | NC_028920_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 30330 | 31832 |
| YP_009209454.1 | NC_028920_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43949 | 44071 |
| YP_009209406.1 | NC_028920_p17 | head-to-tail connector protein | phrog_1857 | head-tail connector protein | connector | 1 | 13342 | 13578 |
| YP_009209476.1 | NC_028920_p87 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 50653 | 50808 |
| YP_009209424.1 | NC_028920_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28625 | 28816 |
| YP_009209405.1 | NC_028920_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12249 | 13256 |
| YP_009209390.1 | NC_028920_p1 | HNH endonuclease | phrog_1271 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 697 | 1347 |
| YP_009209393.1 | NC_028920_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 2265 | 2576 |
| YP_009209436.1 | NC_028920_p47 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35792 | 35974 |
| YP_009209415.1 | NC_028920_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19621 | 21678 |
| YP_009209455.1 | NC_028920_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44068 | 44316 |
| YP_009209437.1 | NC_028920_p48 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35971 | 36762 |
| YP_009209399.1 | NC_028920_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5252 | 6685 |
| YP_009209458.1 | NC_028920_p69 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44732 | 45556 |
| YP_009209451.1 | NC_028920_p62 | hypothetical protein | phrog_26301 | unknown function | unknown function | -1 | 42657 | 42926 |
| YP_009209479.1 | NC_028920_p90 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 51556 | 51744 |
| YP_009209407.1 | NC_028920_p18 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13578 | 14027 |
| YP_009209449.1 | NC_028920_p60 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42326 | 42412 |
| YP_009209418.1 | NC_028920_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23719 | 24165 |
| YP_009209391.1 | NC_028920_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1334 | 1624 |
| YP_009209412.1 | NC_028920_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16207 | 17006 |
| YP_009209444.1 | NC_028920_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39882 | 40397 |
| YP_009209433.1 | NC_028920_p44 | DNA polymerase 1 | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33189 | 35018 |
| YP_009209421.1 | NC_028920_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24878 | 26731 |
| YP_009209426.1 | NC_028920_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29893 | 30177 |
| YP_009209441.1 | NC_028920_p52 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38791 | 39189 |
| YP_009209429.1 | NC_028920_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32282 | 32452 |
| YP_009209456.1 | NC_028920_p67 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44365 | 44547 |
| YP_009209459.1 | NC_028920_p70 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45549 | 45875 |
| YP_009209450.1 | NC_028920_p61 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42409 | 42660 |
| YP_009209478.1 | NC_028920_p89 | hypothetical protein | phrog_11620 | unknown function | unknown function | 1 | 51094 | 51234 |
| YP_009209419.1 | NC_028920_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24162 | 24509 |
| YP_009209408.1 | NC_028920_p19 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 14027 | 14389 |
| YP_009209464.1 | NC_028920_p75 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47650 | 47919 |
| YP_009209397.1 | NC_028920_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4727 | 4987 |
| YP_009209466.1 | NC_028920_p77 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48116 | 48304 |
| YP_009209453.1 | NC_028920_p64 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43779 | 43952 |
| YP_009209443.1 | NC_028920_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39515 | 40093 |
| YP_009209417.1 | NC_028920_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21879 | 23681 |
| YP_009209403.1 | NC_028920_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10787 | 11668 |
| YP_009209401.1 | NC_028920_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7663 | 9351 |
| YP_009209435.1 | NC_028920_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35316 | 35795 |
| YP_009209410.1 | NC_028920_p21 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 14788 | 15234 |
| YP_009209469.1 | NC_028920_p80 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 48941 | 49147 |
| YP_009209414.1 | NC_028920_p25 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17018 | 19597 |
| YP_009209394.1 | NC_028920_p5 | hypothetical protein | phrog_25290 | unknown function | unknown function | 1 | 2632 | 2910 |
| YP_009209420.1 | NC_028920_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24506 | 24853 |
| YP_009209480.1 | NC_028920_p91 | hypothetical protein | phrog_15488 | unknown function | unknown function | -1 | 51879 | 52463 |
| YP_009209439.1 | NC_028920_p50 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36900 | 38618 |
| YP_009209411.1 | NC_028920_p22 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15243 | 16094 |
| YP_009209428.1 | NC_028920_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31953 | 32285 |
| YP_009209425.1 | NC_028920_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28813 | 29772 |
| YP_009209465.1 | NC_028920_p76 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47916 | 48119 |
| YP_009209445.1 | NC_028920_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40376 | 40534 |
| YP_009209423.1 | NC_028920_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28292 | 28615 |
| YP_009209447.1 | NC_028920_p58 | DNA methyltransferase | phrog_67 | DNA methyltransferase | other | -1 | 40691 | 41848 |
| YP_009209477.1 | NC_028920_p88 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 50891 | 51097 |
| YP_009209430.1 | NC_028920_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32449 | 32535 |
| YP_009209474.1 | NC_028920_p85 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 50203 | 50388 |
| YP_009209460.1 | NC_028920_p71 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45872 | 46267 |
| YP_009209452.1 | NC_028920_p63 | DNAB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42958 | 43779 |
| YP_009209462.1 | NC_028920_p73 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47084 | 47383 |
| YP_009209442.1 | NC_028920_p53 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 39186 | 39518 |