Genomic map of Mycobacterium phage Abrogate (NC_028920)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028920
Definition
Mycobacterium phage Abrogate, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52530
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
91
%GC
63.75
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009209438.1 NC_028920_p49 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36755 36895
YP_009209413.1 NC_028920_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16207 16584
YP_009209468.1 NC_028920_p79 hypothetical protein phrog_9043 unknown function unknown function -1 48501 48944
YP_009209392.1 NC_028920_p3 hypothetical protein phrog_226 minor tail protein tail 1 1659 2093
YP_009209472.1 NC_028920_p83 hypothetical protein phrog_17684 unknown function unknown function -1 49645 49758
YP_009209431.1 NC_028920_p42 hypothetical protein phrog_1971 unknown function unknown function -1 32541 32810
YP_009209471.1 NC_028920_p82 hypothetical protein phrog_5798 unknown function unknown function -1 49313 49585
YP_009209448.1 NC_028920_p59 endonuclase VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41845 42339
YP_009209440.1 NC_028920_p51 hypothetical protein phrog_1503 unknown function unknown function -1 38615 38794
YP_009209475.1 NC_028920_p86 hypothetical protein phrog_2212 unknown function unknown function -1 50418 50519
YP_009209396.1 NC_028920_p7 hypothetical protein phrog_553 minor tail protein tail 1 4028 4720
YP_009209409.1 NC_028920_p20 head-to-tail connector protein phrog_321 tail completion or Neck1 protein connector 1 14389 14784
YP_009209473.1 NC_028920_p84 hypothetical protein phrog_5017 unknown function unknown function -1 49856 50203
YP_009209398.1 NC_028920_p9 hypothetical protein phrog_747 unknown function unknown function 1 4995 5252
YP_009209446.1 NC_028920_p57 hypothetical protein phrog_397 unknown function unknown function -1 40531 40665
YP_009209416.1 NC_028920_p27 hypothetical protein phrog_1543 minor tail protein tail 1 21697 21879
YP_009209422.1 NC_028920_p33 D-ala-D-ala-carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 26724 28202
YP_009209434.1 NC_028920_p45 hypothetical protein phrog_1781 unknown function unknown function -1 35055 35285
YP_009209457.1 NC_028920_p68 hypothetical protein phrog_5961 unknown function unknown function -1 44544 44702
YP_009209404.1 NC_028920_p15 scaffold protein phrog_233 head scaffolding protein head and packaging 1 11727 12239
YP_009209463.1 NC_028920_p74 hypothetical protein phrog_26295 unknown function unknown function -1 47393 47653
YP_009209470.1 NC_028920_p81 hypothetical protein phrog_932 unknown function unknown function -1 49167 49316
YP_009209400.1 NC_028920_p11 lysin B phrog_102 endolysin lysis 1 6675 7643
YP_009209432.1 NC_028920_p43 hypothetical protein phrog_383 unknown function unknown function -1 32807 33163
YP_009209402.1 NC_028920_p13 portal protein phrog_104 portal protein head and packaging 1 9348 10790
YP_009209395.1 NC_028920_p6 hypothetical protein phrog_1197 tail protein tail 1 2939 4009
YP_009209461.1 NC_028920_p72 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46309 46995
YP_009209467.1 NC_028920_p78 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48304 48471
YP_009209427.1 NC_028920_p38 integrase phrog_95 integrase integration and excision 1 30330 31832
YP_009209454.1 NC_028920_p65 hypothetical protein phrog_1705 unknown function unknown function -1 43949 44071
YP_009209406.1 NC_028920_p17 head-to-tail connector protein phrog_1857 head-tail connector protein connector 1 13342 13578
YP_009209476.1 NC_028920_p87 hypothetical protein phrog_2985 unknown function unknown function 1 50653 50808
YP_009209424.1 NC_028920_p35 hypothetical protein phrog_1560 unknown function unknown function 1 28625 28816
YP_009209405.1 NC_028920_p16 major capsid protein phrog_10 major head protein head and packaging 1 12249 13256
YP_009209390.1 NC_028920_p1 HNH endonuclease phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism 1 697 1347
YP_009209393.1 NC_028920_p4 hypothetical protein phrog_2830 unknown function unknown function 1 2265 2576
YP_009209436.1 NC_028920_p47 hypothetical protein phrog_499 unknown function unknown function -1 35792 35974
YP_009209415.1 NC_028920_p26 minor tail protein phrog_106 minor tail protein tail 1 19621 21678
YP_009209455.1 NC_028920_p66 hypothetical protein phrog_520 unknown function unknown function -1 44068 44316
YP_009209437.1 NC_028920_p48 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35971 36762
YP_009209399.1 NC_028920_p10 lysin A phrog_317 endolysin lysis 1 5252 6685
YP_009209458.1 NC_028920_p69 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44732 45556
YP_009209451.1 NC_028920_p62 hypothetical protein phrog_26301 unknown function unknown function -1 42657 42926
YP_009209479.1 NC_028920_p90 hypothetical protein phrog_3574 unknown function unknown function 1 51556 51744
YP_009209407.1 NC_028920_p18 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 13578 14027
YP_009209449.1 NC_028920_p60 hypothetical protein phrog_1019 unknown function unknown function -1 42326 42412
YP_009209418.1 NC_028920_p29 hypothetical protein phrog_352 minor tail protein tail 1 23719 24165
YP_009209391.1 NC_028920_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1334 1624
YP_009209412.1 NC_028920_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16207 17006
YP_009209444.1 NC_028920_p55 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39882 40397
YP_009209433.1 NC_028920_p44 DNA polymerase 1 phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33189 35018
YP_009209421.1 NC_028920_p32 minor tail protein phrog_346 minor tail protein tail 1 24878 26731
YP_009209426.1 NC_028920_p37 hypothetical protein phrog_411 unknown function unknown function 1 29893 30177
YP_009209441.1 NC_028920_p52 hypothetical protein phrog_474 phosphofructokinase other -1 38791 39189
YP_009209429.1 NC_028920_p40 hypothetical protein phrog_2035 unknown function unknown function -1 32282 32452
YP_009209456.1 NC_028920_p67 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44365 44547
YP_009209459.1 NC_028920_p70 hypothetical protein phrog_1584 unknown function unknown function -1 45549 45875
YP_009209450.1 NC_028920_p61 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42409 42660
YP_009209478.1 NC_028920_p89 hypothetical protein phrog_11620 unknown function unknown function 1 51094 51234
YP_009209419.1 NC_028920_p30 hypothetical protein phrog_981 minor tail protein tail 1 24162 24509
YP_009209408.1 NC_028920_p19 head-to-tail connector protein phrog_320 head closure Hc1 connector 1 14027 14389
YP_009209464.1 NC_028920_p75 hypothetical protein phrog_1720 unknown function unknown function -1 47650 47919
YP_009209397.1 NC_028920_p8 hypothetical protein phrog_1718 tail protein tail 1 4727 4987
YP_009209466.1 NC_028920_p77 hypothetical protein phrog_1155 unknown function unknown function -1 48116 48304
YP_009209453.1 NC_028920_p64 hypothetical protein phrog_2507 unknown function unknown function -1 43779 43952
YP_009209443.1 NC_028920_p54 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39515 40093
YP_009209417.1 NC_028920_p28 minor tail protein phrog_110 minor tail protein tail 1 21879 23681
YP_009209403.1 NC_028920_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10787 11668
YP_009209401.1 NC_028920_p12 terminase phrog_9 terminase large subunit head and packaging 1 7663 9351
YP_009209435.1 NC_028920_p46 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35316 35795
YP_009209410.1 NC_028920_p21 head-to-tail connector protein phrog_123 tail terminator connector 1 14788 15234
YP_009209469.1 NC_028920_p80 hypothetical protein phrog_8345 unknown function unknown function -1 48941 49147
YP_009209414.1 NC_028920_p25 tapemeasure protein phrog_305 tail length tape measure protein tail 1 17018 19597
YP_009209394.1 NC_028920_p5 hypothetical protein phrog_25290 unknown function unknown function 1 2632 2910
YP_009209420.1 NC_028920_p31 hypothetical protein phrog_1397 unknown function unknown function 1 24506 24853
YP_009209480.1 NC_028920_p91 hypothetical protein phrog_15488 unknown function unknown function -1 51879 52463
YP_009209439.1 NC_028920_p50 phosphoesterase phrog_221 metallo-phosphoesterase other -1 36900 38618
YP_009209411.1 NC_028920_p22 major tail subunit phrog_117 major tail protein tail 1 15243 16094
YP_009209428.1 NC_028920_p39 hypothetical protein phrog_1966 unknown function unknown function -1 31953 32285
YP_009209425.1 NC_028920_p36 hypothetical protein phrog_754 minor tail protein tail 1 28813 29772
YP_009209465.1 NC_028920_p76 hypothetical protein phrog_1387 unknown function unknown function -1 47916 48119
YP_009209445.1 NC_028920_p56 hypothetical protein phrog_1783 unknown function unknown function -1 40376 40534
YP_009209423.1 NC_028920_p34 hypothetical protein phrog_644 unknown function unknown function 1 28292 28615
YP_009209447.1 NC_028920_p58 DNA methyltransferase phrog_67 DNA methyltransferase other -1 40691 41848
YP_009209477.1 NC_028920_p88 hypothetical protein phrog_828 unknown function unknown function 1 50891 51097
YP_009209430.1 NC_028920_p41 hypothetical protein phrog_1860 unknown function unknown function -1 32449 32535
YP_009209474.1 NC_028920_p85 hypothetical protein phrog_5533 unknown function unknown function -1 50203 50388
YP_009209460.1 NC_028920_p71 hypothetical protein phrog_1809 unknown function unknown function -1 45872 46267
YP_009209452.1 NC_028920_p63 DNAB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42958 43779
YP_009209462.1 NC_028920_p73 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47084 47383
YP_009209442.1 NC_028920_p53 hypothetical protein phrog_5618 unknown function unknown function -1 39186 39518