Genomic map of Mycobacterium phage Cambiare (NC_028922)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028922
Definition
Mycobacterium phage Cambiare, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
45161
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
68.79
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009209502.1 NC_028922_p20 hypothetical protein phrog_1697 minor tail protein tail 1 19118 19648
YP_009209536.1 NC_028922_p54 hypothetical protein phrog_23207 unknown function unknown function 1 40206 40505
YP_009209499.1 NC_028922_p17 tapemeasure protein phrog_971 endolysin lysis 1 12153 16196
YP_009209515.1 NC_028922_p33 hypothetical protein phrog_5081 unknown function unknown function 1 30266 30694
YP_009209484.1 NC_028922_p2 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 534 869
YP_009209500.1 NC_028922_p18 hypothetical protein phrog_106 minor tail protein tail 1 16198 17379
YP_009209508.1 NC_028922_p26 hypothetical protein phrog_27155 unknown function unknown function 1 25543 25968
YP_009209528.1 NC_028922_p46 hypothetical protein phrog_7227 unknown function unknown function 1 36742 37284
YP_009209527.1 NC_028922_p45 RecT phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 35311 36741
YP_009209493.1 NC_028922_p11 hypothetical protein phrog_763 head-tail adaptor connector 1 9407 9766
YP_009209525.1 NC_028922_p43 hypothetical protein phrog_5931 unknown function unknown function 1 33393 34238
YP_009209512.1 NC_028922_p30 hypothetical protein phrog_1177 unknown function unknown function 1 28945 29301
YP_009209495.1 NC_028922_p13 hypothetical protein phrog_123 tail terminator connector 1 10004 10477
YP_009209490.1 NC_028922_p8 major capsid protein phrog_10 major head protein head and packaging 1 7717 8619
YP_009209510.1 NC_028922_p28 lysin B phrog_102 endolysin lysis 1 27316 28533
YP_009209548.1 NC_028922_p66 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44472 44798
YP_009209533.1 NC_028922_p51 RuvC phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38958 39542
YP_009209519.1 NC_028922_p37 hypothetical protein phrog_20257 unknown function unknown function 1 31924 32235
YP_009209521.1 NC_028922_p39 hypothetical protein phrog_16899 unknown function unknown function 1 32576 32797
YP_009209505.1 NC_028922_p23 minor tail subunit phrog_346 minor tail protein tail 1 21228 23705
YP_009209518.1 NC_028922_p36 hypothetical protein phrog_23845 unknown function unknown function 1 31655 31927
YP_009209506.1 NC_028922_p24 minor tail protein phrog_416 minor tail protein tail 1 23705 25111
YP_009209496.1 NC_028922_p14 major tail subunit phrog_117 major tail protein tail 1 10474 11094
YP_009209534.1 NC_028922_p52 hypothetical protein phrog_21349 unknown function unknown function 1 39542 39928
YP_009209523.1 NC_028922_p41 hypothetical protein phrog_7392 unknown function unknown function 1 32954 33268
YP_009209492.1 NC_028922_p10 hypothetical protein phrog_1290 head-tail adaptor connector 1 8877 9410
YP_009209526.1 NC_028922_p44 RecE phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 34235 35314
YP_009209529.1 NC_028922_p47 hypothetical protein phrog_1374 unknown function unknown function 1 37281 37448
YP_009209517.1 NC_028922_p35 hypothetical protein phrog_3821 unknown function unknown function 1 31473 31655
YP_009209489.1 NC_028922_p7 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 7095 7676
YP_009209531.1 NC_028922_p49 hypothetical protein phrog_25673 unknown function unknown function 1 37805 38395
YP_009209545.1 NC_028922_p63 hypothetical protein singleton unknown function unknown function 1 43562 43783
YP_009209494.1 NC_028922_p12 hypothetical protein phrog_387 neck protein connector 1 9753 10007
YP_009209546.1 NC_028922_p64 hypothetical protein singleton unknown function unknown function 1 43826 43978
YP_009209503.1 NC_028922_p21 minor tail protein phrog_1565 minor tail protein tail 1 19645 20790
YP_009209532.1 NC_028922_p50 hypothetical protein phrog_7576 unknown function unknown function 1 38392 38961
YP_009209511.1 NC_028922_p29 holin phrog_7198 holin lysis 1 28587 28940
YP_009209507.1 NC_028922_p25 hypothetical protein phrog_240 head protein head and packaging 1 25137 25520
YP_009209488.1 NC_028922_p6 hypothetical protein phrog_1757 unknown function unknown function 1 6831 7028
YP_009209501.1 NC_028922_p19 minor tail protein phrog_110 minor tail protein tail 1 17379 19118
YP_009209498.1 NC_028922_p16 tail assembly chaperone phrog_1861 unknown function unknown function 1 11193 11753
YP_009209483.1 NC_028922_p1 hypothetical protein phrog_3230 unknown function unknown function 1 46 537
YP_009209487.1 NC_028922_p5 capsid maturation protein phrog_1752 head maturation protease head and packaging 1 3916 6834
YP_009209514.1 NC_028922_p32 hypothetical protein phrog_7506 recombination directionality factor integration and excision 1 30030 30269
YP_009209535.1 NC_028922_p53 hypothetical protein phrog_16002 unknown function unknown function 1 39928 40203
YP_009209522.1 NC_028922_p40 hypothetical protein phrog_7486 unknown function unknown function 1 32794 32961
YP_009209491.1 NC_028922_p9 hypothetical protein phrog_24650 head-tail connector protein connector 1 8656 8859
YP_009209539.1 NC_028922_p57 hypothetical protein phrog_8588 unknown function unknown function 1 41110 41427
YP_009209524.1 NC_028922_p42 hypothetical protein phrog_6734 unknown function unknown function 1 33265 33396
YP_009209530.1 NC_028922_p48 hypothetical protein phrog_7826 unknown function unknown function 1 37530 37808
YP_009209513.1 NC_028922_p31 hypothetical protein phrog_798 unknown function unknown function 1 29294 29950
YP_009209540.1 NC_028922_p58 hypothetical protein phrog_37961 unknown function unknown function 1 41485 41691
YP_009209520.1 NC_028922_p38 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 32235 32576
YP_009209486.1 NC_028922_p4 portal protein phrog_104 portal protein head and packaging 1 2394 3935
YP_009209497.1 NC_028922_p15 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 11193 12151
YP_009209537.1 NC_028922_p55 hypothetical protein phrog_7600 unknown function unknown function 1 40502 40954
YP_009209542.1 NC_028922_p60 hypothetical protein phrog_19791 unknown function unknown function 1 42025 42459
YP_009209485.1 NC_028922_p3 terminase large subunit phrog_2 terminase large subunit head and packaging 1 925 2397
YP_009209509.1 NC_028922_p27 lysin A phrog_317 endolysin lysis 1 25961 27316
YP_009209547.1 NC_028922_p65 hypothetical protein phrog_7328 unknown function unknown function 1 44177 44455
YP_009209549.1 NC_028922_p67 hypothetical protein phrog_4307 unknown function unknown function 1 44844 45125
YP_009209541.1 NC_028922_p59 hypothetical protein phrog_21149 unknown function unknown function 1 41704 41916
YP_009209543.1 NC_028922_p61 hypothetical protein phrog_18332 unknown function unknown function 1 42456 42794
YP_009209504.1 NC_028922_p22 hypothetical protein phrog_1736 minor tail protein tail 1 20787 21227
YP_009209544.1 NC_028922_p62 hypothetical protein phrog_25837 unknown function unknown function 1 42851 43498
YP_009209538.1 NC_028922_p56 hypothetical protein phrog_13172 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 40951 41106
YP_009209516.1 NC_028922_p34 hypothetical protein phrog_17562 unknown function unknown function 1 30691 31476