| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028922 |
Definition |
Mycobacterium phage Cambiare, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
45161 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
68.79 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009209502.1 | NC_028922_p20 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 19118 | 19648 |
| YP_009209536.1 | NC_028922_p54 | hypothetical protein | phrog_23207 | unknown function | unknown function | 1 | 40206 | 40505 |
| YP_009209499.1 | NC_028922_p17 | tapemeasure protein | phrog_971 | endolysin | lysis | 1 | 12153 | 16196 |
| YP_009209515.1 | NC_028922_p33 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 30266 | 30694 |
| YP_009209484.1 | NC_028922_p2 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 534 | 869 |
| YP_009209500.1 | NC_028922_p18 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 16198 | 17379 |
| YP_009209508.1 | NC_028922_p26 | hypothetical protein | phrog_27155 | unknown function | unknown function | 1 | 25543 | 25968 |
| YP_009209528.1 | NC_028922_p46 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 36742 | 37284 |
| YP_009209527.1 | NC_028922_p45 | RecT | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 35311 | 36741 |
| YP_009209493.1 | NC_028922_p11 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9407 | 9766 |
| YP_009209525.1 | NC_028922_p43 | hypothetical protein | phrog_5931 | unknown function | unknown function | 1 | 33393 | 34238 |
| YP_009209512.1 | NC_028922_p30 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 28945 | 29301 |
| YP_009209495.1 | NC_028922_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 10004 | 10477 |
| YP_009209490.1 | NC_028922_p8 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7717 | 8619 |
| YP_009209510.1 | NC_028922_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 27316 | 28533 |
| YP_009209548.1 | NC_028922_p66 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44472 | 44798 |
| YP_009209533.1 | NC_028922_p51 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38958 | 39542 |
| YP_009209519.1 | NC_028922_p37 | hypothetical protein | phrog_20257 | unknown function | unknown function | 1 | 31924 | 32235 |
| YP_009209521.1 | NC_028922_p39 | hypothetical protein | phrog_16899 | unknown function | unknown function | 1 | 32576 | 32797 |
| YP_009209505.1 | NC_028922_p23 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 21228 | 23705 |
| YP_009209518.1 | NC_028922_p36 | hypothetical protein | phrog_23845 | unknown function | unknown function | 1 | 31655 | 31927 |
| YP_009209506.1 | NC_028922_p24 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23705 | 25111 |
| YP_009209496.1 | NC_028922_p14 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10474 | 11094 |
| YP_009209534.1 | NC_028922_p52 | hypothetical protein | phrog_21349 | unknown function | unknown function | 1 | 39542 | 39928 |
| YP_009209523.1 | NC_028922_p41 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 32954 | 33268 |
| YP_009209492.1 | NC_028922_p10 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 8877 | 9410 |
| YP_009209526.1 | NC_028922_p44 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 34235 | 35314 |
| YP_009209529.1 | NC_028922_p47 | hypothetical protein | phrog_1374 | unknown function | unknown function | 1 | 37281 | 37448 |
| YP_009209517.1 | NC_028922_p35 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 31473 | 31655 |
| YP_009209489.1 | NC_028922_p7 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 7095 | 7676 |
| YP_009209531.1 | NC_028922_p49 | hypothetical protein | phrog_25673 | unknown function | unknown function | 1 | 37805 | 38395 |
| YP_009209545.1 | NC_028922_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43562 | 43783 |
| YP_009209494.1 | NC_028922_p12 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9753 | 10007 |
| YP_009209546.1 | NC_028922_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43826 | 43978 |
| YP_009209503.1 | NC_028922_p21 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19645 | 20790 |
| YP_009209532.1 | NC_028922_p50 | hypothetical protein | phrog_7576 | unknown function | unknown function | 1 | 38392 | 38961 |
| YP_009209511.1 | NC_028922_p29 | holin | phrog_7198 | holin | lysis | 1 | 28587 | 28940 |
| YP_009209507.1 | NC_028922_p25 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25137 | 25520 |
| YP_009209488.1 | NC_028922_p6 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6831 | 7028 |
| YP_009209501.1 | NC_028922_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17379 | 19118 |
| YP_009209498.1 | NC_028922_p16 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11193 | 11753 |
| YP_009209483.1 | NC_028922_p1 | hypothetical protein | phrog_3230 | unknown function | unknown function | 1 | 46 | 537 |
| YP_009209487.1 | NC_028922_p5 | capsid maturation protein | phrog_1752 | head maturation protease | head and packaging | 1 | 3916 | 6834 |
| YP_009209514.1 | NC_028922_p32 | hypothetical protein | phrog_7506 | recombination directionality factor | integration and excision | 1 | 30030 | 30269 |
| YP_009209535.1 | NC_028922_p53 | hypothetical protein | phrog_16002 | unknown function | unknown function | 1 | 39928 | 40203 |
| YP_009209522.1 | NC_028922_p40 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 32794 | 32961 |
| YP_009209491.1 | NC_028922_p9 | hypothetical protein | phrog_24650 | head-tail connector protein | connector | 1 | 8656 | 8859 |
| YP_009209539.1 | NC_028922_p57 | hypothetical protein | phrog_8588 | unknown function | unknown function | 1 | 41110 | 41427 |
| YP_009209524.1 | NC_028922_p42 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 33265 | 33396 |
| YP_009209530.1 | NC_028922_p48 | hypothetical protein | phrog_7826 | unknown function | unknown function | 1 | 37530 | 37808 |
| YP_009209513.1 | NC_028922_p31 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 29294 | 29950 |
| YP_009209540.1 | NC_028922_p58 | hypothetical protein | phrog_37961 | unknown function | unknown function | 1 | 41485 | 41691 |
| YP_009209520.1 | NC_028922_p38 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 32235 | 32576 |
| YP_009209486.1 | NC_028922_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2394 | 3935 |
| YP_009209497.1 | NC_028922_p15 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11193 | 12151 |
| YP_009209537.1 | NC_028922_p55 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 40502 | 40954 |
| YP_009209542.1 | NC_028922_p60 | hypothetical protein | phrog_19791 | unknown function | unknown function | 1 | 42025 | 42459 |
| YP_009209485.1 | NC_028922_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 925 | 2397 |
| YP_009209509.1 | NC_028922_p27 | lysin A | phrog_317 | endolysin | lysis | 1 | 25961 | 27316 |
| YP_009209547.1 | NC_028922_p65 | hypothetical protein | phrog_7328 | unknown function | unknown function | 1 | 44177 | 44455 |
| YP_009209549.1 | NC_028922_p67 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 44844 | 45125 |
| YP_009209541.1 | NC_028922_p59 | hypothetical protein | phrog_21149 | unknown function | unknown function | 1 | 41704 | 41916 |
| YP_009209543.1 | NC_028922_p61 | hypothetical protein | phrog_18332 | unknown function | unknown function | 1 | 42456 | 42794 |
| YP_009209504.1 | NC_028922_p22 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20787 | 21227 |
| YP_009209544.1 | NC_028922_p62 | hypothetical protein | phrog_25837 | unknown function | unknown function | 1 | 42851 | 43498 |
| YP_009209538.1 | NC_028922_p56 | hypothetical protein | phrog_13172 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40951 | 41106 |
| YP_009209516.1 | NC_028922_p34 | hypothetical protein | phrog_17562 | unknown function | unknown function | 1 | 30691 | 31476 |