Genomic map of Mycobacterium phage Llama (NC_028923)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028923
Definition
Mycobacterium phage Llama, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
58472
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
111
%GC
61.06
Number of singletons
2
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009209608.1 NC_028923_p59 hypothetical protein phrog_3416 unknown function unknown function 1 40037 40720
YP_009209591.1 NC_028923_p42 hypothetical protein phrog_8497 unknown function unknown function -1 31857 32036
YP_009209659.1 NC_028923_p110 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 57380 58003
YP_009209624.1 NC_028923_p75 DNA methylase phrog_32758 DNA methyltransferase other 1 46466 46870
YP_009209612.1 NC_028923_p63 hypothetical protein phrog_2096 unknown function unknown function 1 41912 42397
YP_009209627.1 NC_028923_p78 hypothetical protein phrog_3926 replication initiation protein DNA, RNA and nucleotide metabolism 1 47152 47523
YP_009209636.1 NC_028923_p87 hypothetical protein phrog_1311 unknown function unknown function 1 49484 49627
YP_009209652.1 NC_028923_p103 hypothetical protein phrog_1869 unknown function unknown function 1 54326 54487
YP_009209623.1 NC_028923_p74 DNA methylase phrog_363 DNA methyltransferase other 1 46111 46482
YP_009209631.1 NC_028923_p82 hypothetical protein phrog_1943 unknown function unknown function 1 48325 48519
YP_009209582.1 NC_028923_p33 hypothetical protein phrog_404 minor tail protein tail 1 28973 29347
YP_009209592.1 NC_028923_p43 GIY-YIG endonuclease phrog_16880 endonuclease DNA, RNA and nucleotide metabolism -1 32038 32565
YP_009209595.1 NC_028923_p46 hypothetical protein phrog_1948 unknown function unknown function -1 34514 34966
YP_009209576.1 NC_028923_p27 hypothetical protein phrog_932 unknown function unknown function 1 25951 26100
YP_009209639.1 NC_028923_p90 hypothetical protein phrog_647 unknown function unknown function 1 50154 50447
YP_009209635.1 NC_028923_p86 hypothetical protein phrog_16849 unknown function unknown function 1 49338 49487
YP_009209577.1 NC_028923_p28 hypothetical protein phrog_1172 unknown function unknown function 1 26097 26237
YP_009209604.1 NC_028923_p55 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 38660 38857
YP_009209606.1 NC_028923_p57 hypothetical protein phrog_1816 unknown function unknown function 1 39229 39417
YP_009209641.1 NC_028923_p92 hypothetical protein phrog_1901 unknown function unknown function 1 50653 50844
YP_009209622.1 NC_028923_p73 hypothetical protein phrog_2704 unknown function unknown function 1 45965 46114
YP_009209574.1 NC_028923_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25312 25512
YP_009209569.1 NC_028923_p20 minor tail protein phrog_2106 minor tail protein tail 1 22051 23220
YP_009209555.1 NC_028923_p6 major capsid phrog_267 major head protein head and packaging 1 5046 5867
YP_009209585.1 NC_028923_p36 hypothetical protein phrog_8186 unknown function unknown function 1 30414 30500
YP_009209650.1 NC_028923_p101 hypothetical protein phrog_1467 unknown function unknown function 1 53511 54182
YP_009209626.1 NC_028923_p77 hypothetical protein phrog_1311 unknown function unknown function 1 47009 47164
YP_009209633.1 NC_028923_p84 MPME2 protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 48720 49091
YP_009209554.1 NC_028923_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4434 5027
YP_009209638.1 NC_028923_p89 hypothetical protein phrog_5831 unknown function unknown function 1 49975 50157
YP_009209625.1 NC_028923_p76 hypothetical protein phrog_2070 unknown function unknown function 1 46867 47028
YP_009209607.1 NC_028923_p58 hypothetical protein phrog_1797 unknown function unknown function 1 39414 40001
YP_009209642.1 NC_028923_p93 hypothetical protein phrog_1573 DNA methyltransferase other 1 50841 51242
YP_009209645.1 NC_028923_p96 hypothetical protein phrog_1545 unknown function unknown function 1 52074 52214
YP_009209605.1 NC_028923_p56 hypothetical protein phrog_2021 unknown function unknown function 1 38897 39232
YP_009209593.1 NC_028923_p44 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32562 32756
YP_009209550.1 NC_028923_p1 terminase small subunit phrog_226 minor tail protein tail 1 109 564
YP_009209579.1 NC_028923_p30 lysin A phrog_700 endolysin lysis 1 26534 27727
YP_009209660.1 NC_028923_p111 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 58003 58329
YP_009209656.1 NC_028923_p107 hypothetical protein phrog_2057 unknown function unknown function 1 55335 55496
YP_009209655.1 NC_028923_p106 hypothetical protein phrog_1385 unknown function unknown function 1 55100 55342
YP_009209620.1 NC_028923_p71 hypothetical protein phrog_6938 unknown function unknown function 1 45532 45867
YP_009209575.1 NC_028923_p26 hypothetical protein phrog_411 unknown function unknown function 1 25660 25944
YP_009209588.1 NC_028923_p39 hypothetical protein phrog_780 unknown function unknown function -1 31007 31198
YP_009209571.1 NC_028923_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23602 23856
YP_009209573.1 NC_028923_p24 minor tail protein phrog_754 minor tail protein tail 1 24502 25308
YP_009209657.1 NC_028923_p108 glycosyltransferase/methyltransferase phrog_8858 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 55513 56688
YP_009209637.1 NC_028923_p88 hypothetical protein phrog_647 unknown function unknown function 1 49624 49944
YP_009209559.1 NC_028923_p10 head-to-tail connector phrog_813 head-tail adaptor connector 1 7094 7498
YP_009209647.1 NC_028923_p98 hypothetical protein phrog_2278 unknown function unknown function 1 52582 52878
YP_009209614.1 NC_028923_p65 HTH DNA binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 42669 43034
YP_009209552.1 NC_028923_p3 portal protein phrog_104 portal protein head and packaging 1 2249 3607
YP_009209601.1 NC_028923_p52 hypothetical protein phrog_5253 unknown function unknown function 1 38063 38362
YP_009209581.1 NC_028923_p32 holin phrog_443 holin lysis 1 28743 28976
YP_009209563.1 NC_028923_p14 tapemeasure phrog_1942 tail length tape measure protein tail 1 9489 13247
YP_009209621.1 NC_028923_p72 hypothetical protein phrog_6573 unknown function unknown function 1 45864 45968
YP_009209651.1 NC_028923_p102 hypothetical protein phrog_33189 unknown function unknown function 1 54225 54329
YP_009209586.1 NC_028923_p37 hypothetical protein phrog_1791 unknown function unknown function 1 30497 30718
YP_009209632.1 NC_028923_p83 hypothetical protein phrog_5892 unknown function unknown function 1 48516 48674
YP_009209598.1 NC_028923_p49 hypothetical protein phrog_23624 unknown function unknown function 1 36260 36697
YP_009209580.1 NC_028923_p31 lysin B phrog_102 endolysin lysis 1 27727 28728
YP_009209644.1 NC_028923_p95 hypothetical protein phrog_1091 unknown function unknown function 1 51865 52077
YP_009209556.1 NC_028923_p7 head-to-tail connector phrog_2377 head-tail adaptor Ad1 connector 1 5876 6445
YP_009209594.1 NC_028923_p45 integrase phrog_1 integrase integration and excision 1 33142 34452
YP_009209558.1 NC_028923_p9 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6778 7104
YP_009209589.1 NC_028923_p40 hypothetical protein phrog_647 unknown function unknown function -1 31207 31548
YP_009209578.1 NC_028923_p29 hypothetical protein phrog_747 unknown function unknown function 1 26304 26537
YP_009209561.1 NC_028923_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8535 9471
YP_009209583.1 NC_028923_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29344 29604
YP_009209587.1 NC_028923_p38 hypothetical protein phrog_1839 unknown function unknown function 1 30711 30803
YP_009209658.1 NC_028923_p109 galactosyltransferase phrog_1721 galactosyl transferase moron, auxiliary metabolic gene and host takeover 1 56685 57383
YP_009209611.1 NC_028923_p62 WhiB phrog_1333 unknown function unknown function 1 41421 41915
YP_009209618.1 NC_028923_p69 DNA methylase phrog_111 DNA methyltransferase other 1 44672 45172
YP_009209562.1 NC_028923_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8535 9086
YP_009209640.1 NC_028923_p91 hypothetical protein phrog_2939 unknown function unknown function 1 50444 50656
YP_009209646.1 NC_028923_p97 hypothetical protein phrog_13993 unknown function unknown function 1 52211 52645
YP_009209570.1 NC_028923_p21 hypothetical protein phrog_240 head protein head and packaging 1 23238 23579
YP_009209649.1 NC_028923_p100 GIY-YIG endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 52975 53514
YP_009209615.1 NC_028923_p66 hypothetical protein phrog_2078 unknown function unknown function 1 43031 43189
YP_009209603.1 NC_028923_p54 hypothetical protein phrog_5563 unknown function unknown function 1 38571 38663
YP_009209584.1 NC_028923_p35 DnaQ-like protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29591 30412
YP_009209643.1 NC_028923_p94 hypothetical protein phrog_722 unknown function unknown function 1 51239 51868
YP_009209600.1 NC_028923_p51 hypothetical protein singleton unknown function unknown function 1 37572 38066
YP_009209609.1 NC_028923_p60 hypothetical protein phrog_1849 unknown function unknown function 1 40799 41077
YP_009209557.1 NC_028923_p8 head-to-tail connector phrog_763 head-tail adaptor connector 1 6442 6771
YP_009209567.1 NC_028923_p18 minor tail protein phrog_346 minor tail protein tail 1 17634 20171
YP_009209553.1 NC_028923_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3594 4349
YP_009209619.1 NC_028923_p70 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 45173 45535
YP_009209560.1 NC_028923_p11 major tail subunit phrog_476 major tail protein tail 1 7607 8416
YP_009209572.1 NC_028923_p23 minor tail protein phrog_2012 minor tail protein tail 1 23867 24505
YP_009209654.1 NC_028923_p105 hypothetical protein phrog_1186 unknown function unknown function 1 54690 55103
YP_009209565.1 NC_028923_p16 minor tail protein phrog_110 minor tail protein tail 1 15041 16750
YP_009209596.1 NC_028923_p47 immunity repressor phrog_2838 transcriptional repressor transcription regulation -1 35229 35849
YP_009209564.1 NC_028923_p15 minor tail protein phrog_106 minor tail protein tail 1 13248 14957
YP_009209634.1 NC_028923_p85 hypothetical protein phrog_1573 DNA methyltransferase other 1 49078 49341
YP_009209613.1 NC_028923_p64 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 42394 42672
YP_009209610.1 NC_028923_p61 hypothetical protein phrog_658 unknown function unknown function 1 41074 41421
YP_009209597.1 NC_028923_p48 CRO protein phrog_2104 unknown function unknown function 1 35890 36201
YP_009209602.1 NC_028923_p53 hypothetical protein phrog_2025 unknown function unknown function 1 38359 38574
YP_009209617.1 NC_028923_p68 AAA ATPase phrog_1366 unknown function unknown function 1 43794 44675
YP_009209599.1 NC_028923_p50 antirepresser phrog_130 anti-repressor Ant transcription regulation 1 36694 37575
YP_009209648.1 NC_028923_p99 hypothetical protein phrog_6194 unknown function unknown function 1 52875 52952
YP_009209629.1 NC_028923_p80 hypothetical protein singleton unknown function unknown function 1 47862 48068
YP_009209551.1 NC_028923_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 581 2218
YP_009209630.1 NC_028923_p81 hypothetical protein phrog_2080 unknown function unknown function 1 48065 48328
YP_009209628.1 NC_028923_p79 hypothetical protein phrog_36360 unknown function unknown function 1 47540 47854
YP_009209566.1 NC_028923_p17 minor tail protein phrog_732 minor tail protein tail 1 16792 17637
YP_009209590.1 NC_028923_p41 hypothetical protein phrog_35396 unknown function unknown function -1 31617 31814
YP_009209653.1 NC_028923_p104 hypothetical protein phrog_1694 unknown function unknown function 1 54493 54693
YP_009209616.1 NC_028923_p67 hypothetical protein phrog_1834 unknown function unknown function 1 43186 43527
YP_009209568.1 NC_028923_p19 minor tail protein (D-ala-D-ala carboxypeptidase) phrog_382 minor tail protein with lysin activity tail 1 20168 22048